Basic Information

Type: gene

Biological Identity

Species

prunus_persica

Chromosome

Pp06

Orthogroup ID

OG0012719

Physical Location & Seq

Genomic Coordinates Forward (+)

29839369 .. 29841366

Gene Structure 1998 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Prupe.6G349800.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 648 bp

ATGGACATAGTTTCAGAGCCAATCACCAAGAATCCCCCCATCACCTTTGAAACCCCCATAATCAACAGCTCCACAAGTTCCATGATCACTCCATCATCCTCAGCAATATCTCCAGCCACAACCGCCGACTCCATTTCAACTCCAACTCCAAGCCGCTATGAAAACCAAAAGCGGCGCGACTGGAACACCTTCTGCCAGTACCTCCGGAACCACAGGCCTCCGCTGTCTTTGCCGATGTGCAGCGGGGCCCATGTTCTGGAGTTCCTCCGGTATCTGGATCAGTTTGGCAAGACCAAGATCCACAACCAGACCTGTCCCTTCTTCGGCCTCCCCAACCCACCAGCACCCTGCCCCTGCCCGCTCCGGCAGGCCTGGGGTAGCCTCGATGCCCTCATCGGCCGCCTTAGAGCGGCTTATGAGGAGCACGGCGGGAGGCCGGAGGCCAACCCCTTTGGAGCGAGGGCTGTGAGGCTCTACTTGCGTGAGGTTCGTGATTTCCAGGCCAAGGCAAGAGGGGTGAGTTATGAGAAGAAGAGGAAGAGGCCCAACAACAACAATAATAGTAATAACAATAAGCCAAAACCAAACATGAATGCCATGCTCATCGCAAGTAGTGCTGCTTCTTCAACAACAACAACTACAAGTTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000902 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0006139 GO:0006351 GO:0006725 GO:0006807 GO:0008150 GO:0008152 GO:0009058 GO:0009059 GO:0009299 GO:0009314 GO:0009416 GO:0009628 GO:0009637 GO:0009639 GO:0009653 GO:0009826 GO:0009987 GO:0010114 GO:0010218 GO:0010467 GO:0016043 GO:0016049 GO:0016070 GO:0016071 GO:0018130 GO:0019438 GO:0032502 GO:0032774 GO:0032989 GO:0034641 GO:0034645 GO:0034654 GO:0040007 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044237 GO:0044238 GO:0044249 GO:0044260 GO:0044271 GO:0044424 GO:0044464 GO:0046483 GO:0048589 GO:0048856 GO:0048869 GO:0050896 GO:0060560 GO:0071704 GO:0071840 GO:0090304 GO:0090698 GO:0097659 GO:1901360 GO:1901362 GO:1901576

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

DUF640

Protein Analysis

216

Amino Acids

23.86

Weight (kDa)

9.84

Isoelectric Point (pI)

46.76

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0012719)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G04510 AT5G28490
fragaria_vesca	FvH4_6g01940
malus_domestica	MD04G1229700.v1.1
prunus_persica	Prupe.6G349800_v2.0.a1
pyrus_communis	pycom04g20350 pycom12g22620 pycom12g22670
rosa_chinensis	RchiOBHm_Chr3g0449731
rosa_laevigata	RLG00000025801
rosa_multiflora	Rmu_sc0000610.1_g000016
rosa_roxburghii	Rroxscaffold_6G00427600
rosa_rugosa	Rorug02G0622800
rosa_samantha	Rh3AG021200 Rh3BG021900 Rh3CG020500 Rh3DG021700
rosa_wichuraiana	Rw3G001750

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB7I	CCANNNNNTGG	1 cut(s)	256
AccBSI	CCGCTC	2 cut(s)	361, 410
AccII	CGCG	1 cut(s)	177
AccIII	TCCGGA	1 cut(s)	204
AciI	CCGC	9 cut(s)	123, 154, 172, 221, 243, 359, 400, 410, 429
AclWI	GGATC	2 cut(s)	285, 292
AcoI	YGGCCR	1 cut(s)	397
AfaI	GTAC	1 cut(s)	200
AfiI	CCNNNNNNNGG	5 cut(s)	256, 274, 323, 409, 505
AgsI	TTSAA	3 cut(s)	50, 138, 627
AjnI	CCWGG	2 cut(s)	371, 498
AluBI	AGCT	1 cut(s)	69
AluI	AGCT	1 cut(s)	69
Alw21I	GWGCWC	1 cut(s)	426
AlwI	GGATC	2 cut(s)	285, 292
Aor13HI	TCCGGA	1 cut(s)	204
AoxI	GGCC	9 cut(s)	215, 246, 325, 369, 397, 434, 441, 501, 542
ApaI	GGGCCC	1 cut(s)	250
ApeKI	GCWGC	2 cut(s)	240, 617
Asp700I	GAANNNNTTC	1 cut(s)	188
AspLEI	GCGC	1 cut(s)	177
AspS9I	GGNCC	3 cut(s)	246, 247, 543
AsuHPI	GGTGA	3 cut(s)	16, 34, 529
BaeGI	GKGCMC	1 cut(s)	250
BanII	GRGCYC	1 cut(s)	250
BarI	GAAGNNNNNNTAC	2 cut(s)	604, 636
Bbv12I	GWGCWC	1 cut(s)	426
BbvCI	CCTCAGC	1 cut(s)	100
BbvI	GCAGC	2 cut(s)	252, 604
BccI	CCATC	2 cut(s)	47, 100
BceAI	ACGGC	1 cut(s)	442
BciT130I	CCWGG	2 cut(s)	373, 500
BclI	TGATCA	1 cut(s)	84
BisI	GCNGC	6 cut(s)	154, 173, 241, 400, 411, 618
BlsI	GCNGC	6 cut(s)	155, 174, 242, 401, 412, 619
Bme1390I	CCNGG	2 cut(s)	373, 500
BmgT120I	GGNCC	3 cut(s)	246, 247, 543
BmiI	GGNNCC	3 cut(s)	209, 247, 248
BmrFI	CCNGG	2 cut(s)	373, 500
BmsI	GCATC	1 cut(s)	376
BpmI	CTGGAG	2 cut(s)	96, 278
Bpu10I	CCTNAGC	1 cut(s)	100
BsaJI	CCNNGG	2 cut(s)	372, 504
BsaWI	WCCGGW	2 cut(s)	204, 267
BsaXI	ACNNNNNCTCC	2 cut(s)	130, 160
Bsc4I	CCNNNNNNNGG	5 cut(s)	256, 274, 323, 409, 505
Bse1I	ACTGG	2 cut(s)	185, 196
BseAI	TCCGGA	1 cut(s)	204
BseBI	CCWGG	2 cut(s)	373, 500
BseDI	CCNNGG	2 cut(s)	372, 504
BseGI	GGATG	1 cut(s)	95
BseLI	CCNNNNNNNGG	5 cut(s)	256, 274, 323, 409, 505
BseMII	CTCAG	1 cut(s)	114
BseNI	ACTGG	2 cut(s)	185, 196
BseRI	GAGGAG	1 cut(s)	434
BseSI	GKGCMC	1 cut(s)	250
BseX3I	CGGCCG	1 cut(s)	397
BseXI	GCAGC	2 cut(s)	252, 604
BsgI	GTGCAG	1 cut(s)	259
Bsh1236I	CGCG	1 cut(s)	177
Bsh1285I	CGRYCG	1 cut(s)	400
BshFI	GGCC	9 cut(s)	217, 248, 327, 371, 399, 436, 443, 503, 544
BsiEI	CGRYCG	1 cut(s)	400
BsiHKAI	GWGCWC	1 cut(s)	426
BsiSI	CCGG	4 cut(s)	205, 268, 364, 437
BslFI	GGGAC	1 cut(s)	300
BslI	CCNNNNNNNGG	5 cut(s)	256, 274, 323, 409, 505
BsmFI	GGGAC	1 cut(s)	300
BsmI	GAATGC	1 cut(s)	598
BsnI	GGCC	9 cut(s)	217, 248, 327, 371, 399, 436, 443, 503, 544
Bsp120I	GGGCCC	1 cut(s)	246
Bsp1286I	GDGCHC	2 cut(s)	250, 426
Bsp13I	TCCGGA	1 cut(s)	204
Bsp143I	GATC	3 cut(s)	84, 277, 297
BspACI	CCGC	9 cut(s)	123, 154, 172, 221, 243, 359, 400, 410, 429
BspANI	GGCC	9 cut(s)	217, 248, 327, 371, 399, 436, 443, 503, 544
BspCNI	CTCAG	1 cut(s)	113
BspEI	TCCGGA	1 cut(s)	204
BspFNI	CGCG	1 cut(s)	177
BspLI	GGNNCC	3 cut(s)	209, 247, 248
BspPI	GGATC	2 cut(s)	285, 292
BsrBI	CCGCTC	2 cut(s)	361, 410
BsrI	ACTGG	2 cut(s)	185, 196
BssECI	CCNNGG	2 cut(s)	372, 504
BssMI	GATC	3 cut(s)	84, 277, 297
BssT1I	CCWWGG	1 cut(s)	504
Bst2UI	CCWGG	2 cut(s)	373, 500
Bst6I	CTCTTC	2 cut(s)	527, 533
BstAPI	GCANNNNNTGC	1 cut(s)	614
BstC8I	GCNNGC	2 cut(s)	359, 369
BstDEI	CTNAG	2 cut(s)	100, 404
BstF5I	GGATG	1 cut(s)	95
BstFNI	CGCG	1 cut(s)	177
BstHHI	GCGC	1 cut(s)	177
BstKTI	GATC	3 cut(s)	87, 280, 300
BstMBI	GATC	3 cut(s)	84, 277, 297
BstMCI	CGRYCG	1 cut(s)	400
BstMWI	GCNNNNNNNGC	4 cut(s)	122, 229, 478, 614
BstNI	CCWGG	2 cut(s)	373, 500
BstSCI	CCNGG	2 cut(s)	371, 498
BstSLI	GKGCMC	1 cut(s)	250
BstUI	CGCG	1 cut(s)	177
BstV1I	GCAGC	2 cut(s)	252, 604
BstX2I	RGATCY	1 cut(s)	297
BstYI	RGATCY	1 cut(s)	297
BstZI	CGGCCG	1 cut(s)	397
BsuRI	GGCC	9 cut(s)	217, 248, 327, 371, 399, 436, 443, 503, 544
BtgZI	GCGATG	1 cut(s)	589
BtsCI	GGATG	1 cut(s)	95
Cac8I	GCNNGC	2 cut(s)	359, 369
CfoI	GCGC	1 cut(s)	177
Cfr13I	GGNCC	3 cut(s)	246, 247, 543
Csp6I	GTAC	1 cut(s)	199
CviAII	CATG	4 cut(s)	82, 251, 589, 598
CviQI	GTAC	1 cut(s)	199
DdeI	CTNAG	2 cut(s)	100, 404
DpnI	GATC	3 cut(s)	86, 279, 299
DpnII	GATC	3 cut(s)	84, 277, 297
EaeI	YGGCCR	1 cut(s)	397
EagI	CGGCCG	1 cut(s)	397
Eam1104I	CTCTTC	2 cut(s)	527, 533
EarI	CTCTTC	2 cut(s)	527, 533
EclXI	CGGCCG	1 cut(s)	397
Eco130I	CCWWGG	1 cut(s)	504
Eco147I	AGGCCT	2 cut(s)	217, 371
Eco24I	GRGCYC	1 cut(s)	250
Eco52I	CGGCCG	1 cut(s)	397
EcoO109I	RGGNCCY	1 cut(s)	246
EcoRII	CCWGG	2 cut(s)	371, 498
EcoT14I	CCWWGG	1 cut(s)	504
EcoT38I	GRGCYC	1 cut(s)	250
ErhI	CCWWGG	1 cut(s)	504
FaeI	CATG	4 cut(s)	85, 254, 592, 601
FaiI	YATR	9 cut(s)	8, 59, 83, 159, 252, 417, 525, 590, 599
FaqI	GGGAC	1 cut(s)	300
FatI	CATG	4 cut(s)	81, 250, 588, 597
FauI	CCCGC	3 cut(s)	236, 366, 422
FbaI	TGATCA	1 cut(s)	84
Fnu4HI	GCNGC	6 cut(s)	154, 173, 241, 400, 411, 618
FokI	GGATG	1 cut(s)	82
FriOI	GRGCYC	1 cut(s)	250
Fsp4HI	GCNGC	6 cut(s)	154, 173, 241, 400, 411, 618
GlaI	GCGC	1 cut(s)	176
GluI	GCNGC	6 cut(s)	154, 173, 241, 400, 411, 618
GsuI	CTGGAG	2 cut(s)	96, 278
HaeIII	GGCC	9 cut(s)	217, 248, 327, 371, 399, 436, 443, 503, 544
HapII	CCGG	4 cut(s)	205, 268, 364, 437
HhaI	GCGC	1 cut(s)	177
Hin1II	CATG	4 cut(s)	85, 254, 592, 601
Hin6I	GCGC	1 cut(s)	175
HinP1I	GCGC	1 cut(s)	175
HinfI	GANTC	2 cut(s)	31, 128
HpaII	CCGG	4 cut(s)	205, 268, 364, 437
HphI	GGTGA	3 cut(s)	16, 34, 529
Hpy188I	TCNGA	1 cut(s)	16
Hpy188III	TCNNGA	4 cut(s)	205, 257, 275, 491
HpyAV	CCTTC	2 cut(s)	199, 328
HpyCH4V	TGCA	1 cut(s)	240
HpyF10VI	GCNNNNNNNGC	4 cut(s)	122, 229, 478, 614
HpyF3I	CTNAG	2 cut(s)	100, 404
Hsp92II	CATG	4 cut(s)	85, 254, 592, 601
HspAI	GCGC	1 cut(s)	175
Kpn2I	TCCGGA	1 cut(s)	204
Ksp22I	TGATCA	1 cut(s)	84
Kzo9I	GATC	3 cut(s)	84, 277, 297
LmnI	GCTCC	4 cut(s)	74, 366, 421, 455
Lsp1109I	GCAGC	2 cut(s)	252, 604
LweI	GCATC	1 cut(s)	376
MalI	GATC	3 cut(s)	86, 279, 299
MbiI	CCGCTC	2 cut(s)	361, 410
MboI	GATC	3 cut(s)	84, 277, 297
MboII	GAAGA	5 cut(s)	313, 541, 544, 550, 615
MflI	RGATCY	1 cut(s)	297
MhlI	GDGCHC	2 cut(s)	250, 426
MlyI	GAGTC	1 cut(s)	122
MmeI	TCCRAC	1 cut(s)	167
MroI	TCCGGA	1 cut(s)	204
MroXI	GAANNNNTTC	1 cut(s)	188
MseI	TTAA	1 cut(s)	646
MspA1I	CMGCKG	2 cut(s)	223, 243
MspI	CCGG	4 cut(s)	205, 268, 364, 437
MspR9I	CCNGG	2 cut(s)	373, 500
Mva1269I	GAATGC	1 cut(s)	598
MvaI	CCWGG	2 cut(s)	373, 500
MvnI	CGCG	1 cut(s)	177
MwoI	GCNNNNNNNGC	4 cut(s)	122, 229, 478, 614
NdeII	GATC	3 cut(s)	84, 277, 297
NlaIII	CATG	4 cut(s)	85, 254, 592, 601
NlaIV	GGNNCC	3 cut(s)	209, 247, 248
PceI	AGGCCT	2 cut(s)	217, 371
PctI	GAATGC	1 cut(s)	598
PdmI	GAANNNNTTC	1 cut(s)	188
PfeI	GAWTC	1 cut(s)	31
PflMI	CCANNNNNTGG	1 cut(s)	256
PkrI	GCNGC	6 cut(s)	155, 174, 242, 401, 412, 619
PleI	GAGTC	1 cut(s)	122
PpsI	GAGTC	1 cut(s)	122
Psp6I	CCWGG	2 cut(s)	371, 498
PspGI	CCWGG	2 cut(s)	371, 498
PspN4I	GGNNCC	3 cut(s)	209, 247, 248
PspOMI	GGGCCC	1 cut(s)	246
PspPI	GGNCC	3 cut(s)	246, 247, 543
PsuI	RGATCY	1 cut(s)	297
RsaI	GTAC	1 cut(s)	200
RsaNI	GTAC	1 cut(s)	199
SaqAI	TTAA	1 cut(s)	646
SatI	GCNGC	6 cut(s)	154, 173, 241, 400, 411, 618
Sau3AI	GATC	3 cut(s)	84, 277, 297
Sau96I	GGNCC	3 cut(s)	246, 247, 543
SchI	GAGTC	1 cut(s)	122
ScrFI	CCNGG	2 cut(s)	373, 500
SduI	GDGCHC	2 cut(s)	250, 426
SetI	ASST	6 cut(s)	47, 71, 191, 204, 314, 489
SfaNI	GCATC	1 cut(s)	376
SseBI	AGGCCT	2 cut(s)	217, 371
SsiI	CCGC	9 cut(s)	123, 154, 172, 221, 243, 359, 400, 410, 429
StuI	AGGCCT	2 cut(s)	217, 371
StyD4I	CCNGG	2 cut(s)	371, 498
StyI	CCWWGG	1 cut(s)	504
TaqI	TCGA	1 cut(s)	384
TauI	GCSGC	4 cut(s)	156, 175, 402, 413
TfiI	GAWTC	1 cut(s)	31
Tru1I	TTAA	1 cut(s)	646
Tru9I	TTAA	1 cut(s)	646
TseI	GCWGC	2 cut(s)	240, 617
TspDTI	ATGAA	2 cut(s)	174, 605
Van91I	CCANNNNNTGG	1 cut(s)	256
XmnI	GAANNNNTTC	1 cut(s)	188

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.