AT3G04880

DNA-damage-repair toleration protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
arabidopsis_thaliana
3
OG0014381
Physical Location & Seq
Reverse (-)
1346273 .. 1347377
1105 bp
Loading structure...
UTR
Exon/CDS
Intron
AT3G04880.1

Sequence Viewer

Length: 933 bp
ATGGCCGGAGCTGTTTCTGCCGTCGATCAACCGTTGAAAATCATCACCGGAGCTGATGACTTTGGAGCGAGCCTCAAGGACGCGATGGTAACACACCTCCGCTCTCTCGGCATAGACGTGGAGGATACCGGAGTGTCCTCTTACTACTCTGCTGGATCTGAAGTCGGTCGCCGCGTCTCCGCTTCATCGTCTTCCGAAGTTCGCGGCTTAGTCTGCTGCGGCACCGGCGTCGGAGTTGCGATGTTCGCCAACAAGTTCCCGGGCGTCTACGCAGCCACTTGTCTCTCCGTCGAAGACGCCGTCAACGCTCGATCAATAAGCAATTGCAATGTCCTCGCATTCTCCGGCATCAAAACATCCCCGGAAACCGCCTTGGAAATCTTCGACGCTTGGATCAAAACTCCTTTCAAATCTCCTTGTCCTGCGTCCGGATCCGAACCATGGAGCTCAGTTATCTCTTCCTTCCTCGACAATTCTCTCTCCGAGATGTCTCAGATTGGAAAGTCAACCGCCGGCGATTCAACAACCAAGAAGATCGATGAAACAACCGCGTCTTGCGTAATTTGCTGCTTGGCGAAGAACAGAGAGTTCACTCCAGTGGACATCATGCCGGGAGGCTCGATGAAGATCGTTAGAGAGACGCCGACGTCGGCGATTGTAAGATTCAAAGCGGGAAGTGTGGAACCGGCGCATCACCACACATTCGGCCATGACCTTGTAGTCATAAAGGGAAAGAAAAGTGTGTGGAATCTGAGCAAGAAGGAGAGAGCTGATCTCGTTGACGGCGATTACCTATTCACTCCCGCCGGTGATGTTCACCGAGTCAAATATCACGAAGACACTGAGTTCTTCATCACTTGGGATGGCCATTGGGACATATTCCTTGACGAAGACCTCGAAACTGCAAAGAAAGCCATCGAAGAAGAAGCTTGA

Protein Analysis

310

Amino Acids

33.23

Weight (kDa)

5.14

Isoelectric Point (pI)

35.62

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
LacAB_rpiB PF02502 14 - 137 2.7e-28 Ribose/Galactose Isomerase
Cupin_7 PF12973 205 - 290 6e-08 ChrR Cupin-like domain
Cupin_2 PF07883 219 - 283 1.5e-06 Cupin domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
Loading...
Style Settings
Image
Tree File
Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0014381)

Species Orthologous Gene IDs
arabidopsis_thaliana AT3G04880
fragaria_vesca FvH4_6g03430
malus_domestica MD12G1237200.v1.1
prunus_persica Prupe.6G339900_v2.0.a1
pyrus_communis pycom12g21810
rosa_chinensis RchiOBHm_Chr3g0451931
rosa_laevigata RLG00000025637
rosa_multiflora Rmu_sc0002901.1_g000002 Rmu_ssc0000467.1_g000022
rosa_roxburghii Rroxscaffold_164G00436200 Rroxscaffold_6G00429100
rosa_rugosa Rorug02G0637500
rosa_samantha Rh3AG039200 Rh3BG040500 Rh3CG039000 Rh3DG039700
rosa_wichuraiana Rw3G002930

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AasI GACNNNNNNGTC 2 cut(s) 646, 719
AatII GACGTC 1 cut(s) 650
AccB1I GGYRCC 1 cut(s) 221
AccBSI CCGCTC 1 cut(s) 102
AccI GTMKAC 1 cut(s) 267
AccII CGCG 4 cut(s) 83, 174, 204, 551
AccIII TCCGGA 1 cut(s) 428
AclWI GGATC 4 cut(s) 163, 401, 426, 439
AcoI YGGCCR 3 cut(s) 3, 706, 865
AcuI CTGAAG 1 cut(s) 180
AcyI GRCGYC 5 cut(s) 228, 264, 297, 641, 647
AfiI CCNNNNNNNGG 2 cut(s) 428, 441
AgsI TTSAA 4 cut(s) 37, 409, 522, 667
AjiI CACGTC 1 cut(s) 118
AleI CACNNNNGTG 1 cut(s) 596
AluBI AGCT 5 cut(s) 11, 53, 447, 770, 929
AluI AGCT 5 cut(s) 11, 53, 447, 770, 929
Alw21I GWGCWC 1 cut(s) 449
Alw26I GTCTC 4 cut(s) 181, 287, 495, 632
AlwI GGATC 4 cut(s) 163, 401, 426, 439
Ama87I CYCGRG 1 cut(s) 259
Aor13HI TCCGGA 1 cut(s) 428
AoxI GGCC 3 cut(s) 3, 706, 865
ApeKI GCWGC 3 cut(s) 216, 272, 567
ArsI GACNNNNNNTTYG 2 cut(s) 285, 317
AspLEI GCGC 1 cut(s) 691
AsuC2I CCSGG 4 cut(s) 260, 261, 362, 612
AsuHPI GGTGA 4 cut(s) 37, 686, 809, 821
AvaI CYCGRG 1 cut(s) 259
BaeI ACNNNNGTAYC 2 cut(s) 117, 150
BalI TGGCCA 1 cut(s) 867
BamHI GGATCC 1 cut(s) 431
BanI GGYRCC 1 cut(s) 221
BanII GRGCYC 1 cut(s) 449
BbsI GAAGAC 4 cut(s) 183, 300, 843, 897
Bbv12I GWGCWC 1 cut(s) 449
BbvI GCAGC 3 cut(s) 203, 284, 554
BccI CCATC 3 cut(s) 79, 857, 923
BceAI ACGGC 3 cut(s) 5, 284, 799
BcgI CGANNNNNNTGC 4 cut(s) 211, 245, 316, 350
BciVI GTATCC 1 cut(s) 118
BcnI CCSGG 4 cut(s) 260, 261, 362, 612
BcoDI GTCTC 4 cut(s) 181, 287, 495, 632
BfuI GTATCC 1 cut(s) 118
BisI GCNGC 6 cut(s) 172, 205, 217, 220, 273, 568
BlsI GCNGC 6 cut(s) 173, 206, 218, 221, 274, 569
Bme1390I CCNGG 4 cut(s) 260, 261, 362, 612
BmeT110I CYCGRG 1 cut(s) 259
BmgBI CACGTC 1 cut(s) 118
BmiI GGNNCC 3 cut(s) 223, 433, 684
BmrFI CCNGG 4 cut(s) 260, 261, 362, 612
BmsI GCATC 2 cut(s) 357, 700
BpiI GAAGAC 4 cut(s) 183, 300, 843, 897
BplI GAGNNNNNCTC 4 cut(s) 57, 89, 759, 791
BpmI CTGGAG 1 cut(s) 579
BpuEI CTTGAG 1 cut(s) 59
BpuMI CCSGG 4 cut(s) 260, 261, 362, 612
Bsa29I ATCGAT 1 cut(s) 537
BsaBI GATNNNNATC 1 cut(s) 626
BsaHI GRCGYC 5 cut(s) 228, 264, 297, 641, 647
BsaJI CCNNGG 4 cut(s) 259, 360, 372, 440
BsaWI WCCGGW 3 cut(s) 47, 128, 428
Bsc4I CCNNNNNNNGG 2 cut(s) 428, 441
Bse118I RCCGGY 4 cut(s) 224, 512, 685, 806
Bse1I ACTGG 1 cut(s) 596
Bse3DI GCAATG 1 cut(s) 334
Bse8I GATNNNNATC 1 cut(s) 626
BseAI TCCGGA 1 cut(s) 428
BseCI ATCGAT 1 cut(s) 537
BseDI CCNNGG 4 cut(s) 259, 360, 372, 440
BseGI GGATG 2 cut(s) 356, 868
BseJI GATNNNNATC 1 cut(s) 626
BseLI CCNNNNNNNGG 2 cut(s) 428, 441
BseMI GCAATG 1 cut(s) 334
BseMII CTCAG 4 cut(s) 462, 506, 743, 834
BseNI ACTGG 1 cut(s) 596
BseXI GCAGC 3 cut(s) 203, 284, 554
Bsh1236I CGCG 4 cut(s) 83, 174, 204, 551
Bsh1285I CGRYCG 1 cut(s) 169
BshFI GGCC 3 cut(s) 5, 708, 867
BshNI GGYRCC 1 cut(s) 221
BshVI ATCGAT 1 cut(s) 537
BsiEI CGRYCG 1 cut(s) 169
BsiHKAI GWGCWC 1 cut(s) 449
BsiHKCI CYCGRG 1 cut(s) 259
BslFI GGGAC 1 cut(s) 887
BslI CCNNNNNNNGG 2 cut(s) 428, 441
BsmAI GTCTC 4 cut(s) 181, 287, 495, 632
BsmBI CGTCTC 2 cut(s) 181, 632
BsmFI GGGAC 1 cut(s) 887
BsmI GAATGC 1 cut(s) 338
BsnI GGCC 3 cut(s) 5, 708, 867
BsoBI CYCGRG 1 cut(s) 259
Bsp1286I GDGCHC 1 cut(s) 449
Bsp13I TCCGGA 1 cut(s) 428
Bsp143I GATC 8 cut(s) 25, 155, 311, 393, 431, 534, 627, 772
Bsp19I CCATGG 1 cut(s) 440
BspANI GGCC 3 cut(s) 5, 708, 867
BspCNI CTCAG 4 cut(s) 461, 505, 744, 835
BspDI ATCGAT 1 cut(s) 537
BspEI TCCGGA 1 cut(s) 428
BspFNI CGCG 4 cut(s) 83, 174, 204, 551
BspLI GGNNCC 3 cut(s) 223, 433, 684
BspPI GGATC 4 cut(s) 163, 401, 426, 439
BspT107I GGYRCC 1 cut(s) 221
BsrBI CCGCTC 1 cut(s) 102
BsrDI GCAATG 1 cut(s) 334
BsrFI RCCGGY 4 cut(s) 224, 512, 685, 806
BsrI ACTGG 1 cut(s) 596
BssAI RCCGGY 4 cut(s) 224, 512, 685, 806
BssECI CCNNGG 4 cut(s) 259, 360, 372, 440
BssMI GATC 8 cut(s) 25, 155, 311, 393, 431, 534, 627, 772
BssNI GRCGYC 5 cut(s) 228, 264, 297, 641, 647
BssT1I CCWWGG 2 cut(s) 372, 440
Bst4CI ACNGT 1 cut(s) 33
Bst6I CTCTTC 1 cut(s) 463
BstACI GRCGYC 5 cut(s) 228, 264, 297, 641, 647
BstC8I GCNNGC 2 cut(s) 70, 514
BstDEI CTNAG 5 cut(s) 208, 448, 492, 752, 843
BstDSI CCRYGG 1 cut(s) 440
BstF5I GGATG 2 cut(s) 356, 868
BstFNI CGCG 4 cut(s) 83, 174, 204, 551
BstHHI GCGC 1 cut(s) 691
BstKTI GATC 8 cut(s) 28, 158, 314, 396, 434, 537, 630, 775
BstMAI GTCTC 4 cut(s) 181, 287, 495, 632
BstMBI GATC 8 cut(s) 25, 155, 311, 393, 431, 534, 627, 772
BstMCI CGRYCG 1 cut(s) 169
BstMWI GCNNNNNNNGC 8 cut(s) 17, 108, 213, 225, 245, 305, 564, 911
BstSCI CCNGG 4 cut(s) 258, 259, 360, 610
BstUI CGCG 4 cut(s) 83, 174, 204, 551
BstV1I GCAGC 3 cut(s) 203, 284, 554
BstV2I GAAGAC 4 cut(s) 183, 300, 843, 897
BstX2I RGATCY 2 cut(s) 155, 431
BstYI RGATCY 2 cut(s) 155, 431
Bsu15I ATCGAT 1 cut(s) 537
BsuI GTATCC 1 cut(s) 118
BsuRI GGCC 3 cut(s) 5, 708, 867
BsuTUI ATCGAT 1 cut(s) 537
BtgI CCRYGG 1 cut(s) 440
BtgZI GCGATG 2 cut(s) 98, 254
BtrI CACGTC 1 cut(s) 118
BtsCI GGATG 2 cut(s) 356, 868
BtsIMutI CAGTG 2 cut(s) 603, 840
Cac8I GCNNGC 2 cut(s) 70, 514
CfoI GCGC 1 cut(s) 691
Cfr10I RCCGGY 4 cut(s) 224, 512, 685, 806
Cfr9I CCCGGG 1 cut(s) 259
ClaI ATCGAT 1 cut(s) 537
CseI GACGC 9 cut(s) 89, 163, 217, 253, 305, 395, 414, 540, 649
CviAII CATG 3 cut(s) 441, 607, 710
DdeI CTNAG 5 cut(s) 208, 448, 492, 752, 843
DpnI GATC 8 cut(s) 27, 157, 313, 395, 433, 536, 629, 774
DpnII GATC 8 cut(s) 25, 155, 311, 393, 431, 534, 627, 772
DrdI GACNNNNNNGTC 2 cut(s) 646, 719
DseDI GACNNNNNNGTC 2 cut(s) 646, 719
EaeI YGGCCR 3 cut(s) 3, 706, 865
Eam1104I CTCTTC 1 cut(s) 463
EarI CTCTTC 1 cut(s) 463
Ecl136II GAGCTC 1 cut(s) 447
Eco130I CCWWGG 2 cut(s) 372, 440
Eco24I GRGCYC 1 cut(s) 449
Eco53kI GAGCTC 1 cut(s) 447
Eco57I CTGAAG 1 cut(s) 180
Eco88I CYCGRG 1 cut(s) 259
EcoICRI GAGCTC 1 cut(s) 447
EcoT14I CCWWGG 2 cut(s) 372, 440
EcoT38I GRGCYC 1 cut(s) 449
ErhI CCWWGG 2 cut(s) 372, 440
Esp3I CGTCTC 2 cut(s) 181, 632
FaeI CATG 3 cut(s) 444, 610, 713
FaiI YATR 6 cut(s) 113, 442, 608, 711, 725, 878
FaqI GGGAC 1 cut(s) 887
FatI CATG 3 cut(s) 440, 606, 709
FauI CCCGC 2 cut(s) 664, 811
FblI GTMKAC 1 cut(s) 267
Fnu4HI GCNGC 6 cut(s) 172, 205, 217, 220, 273, 568
FokI GGATG 2 cut(s) 343, 875
FriOI GRGCYC 1 cut(s) 449
Fsp4HI GCNGC 6 cut(s) 172, 205, 217, 220, 273, 568
GlaI GCGC 1 cut(s) 690
GluI GCNGC 6 cut(s) 172, 205, 217, 220, 273, 568
GsuI CTGGAG 1 cut(s) 579
HaeIII GGCC 3 cut(s) 5, 708, 867
HgaI GACGC 9 cut(s) 89, 163, 217, 253, 305, 395, 414, 540, 649
HhaI GCGC 1 cut(s) 691
Hin1I GRCGYC 5 cut(s) 228, 264, 297, 641, 647
Hin1II CATG 3 cut(s) 444, 610, 713
Hin6I GCGC 1 cut(s) 689
HinP1I GCGC 1 cut(s) 689
HincII GTYRAC 3 cut(s) 304, 507, 781
HindII GTYRAC 3 cut(s) 304, 507, 781
HindIII AAGCTT 1 cut(s) 927
HinfI GANTC 4 cut(s) 518, 663, 748, 822
HphI GGTGA 4 cut(s) 37, 686, 809, 821
Hpy166II GTNNAC 7 cut(s) 268, 304, 507, 591, 601, 781, 817
Hpy188I TCNGA 7 cut(s) 160, 196, 233, 436, 484, 495, 753
Hpy188III TCNNGA 2 cut(s) 429, 833
Hpy8I GTNNAC 7 cut(s) 268, 304, 507, 591, 601, 781, 817
Hpy99I CGWCG 6 cut(s) 26, 233, 293, 389, 649, 652
HpyAV CCTTC 2 cut(s) 472, 754
HpyCH4III ACNGT 1 cut(s) 33
HpyCH4IV ACGT 2 cut(s) 117, 647
HpyCH4V TGCA 2 cut(s) 327, 905
HpyF10VI GCNNNNNNNGC 8 cut(s) 17, 108, 213, 225, 245, 305, 564, 911
HpyF3I CTNAG 5 cut(s) 208, 448, 492, 752, 843
HpySE526I ACGT 2 cut(s) 117, 647
Hsp92I GRCGYC 5 cut(s) 228, 264, 297, 641, 647
Hsp92II CATG 3 cut(s) 444, 610, 713
HspAI GCGC 1 cut(s) 689
Kpn2I TCCGGA 1 cut(s) 428
KroI GCCGGC 1 cut(s) 512
KroNI GCCGGC 1 cut(s) 514
Kzo9I GATC 8 cut(s) 25, 155, 311, 393, 431, 534, 627, 772
LmnI GCTCC 4 cut(s) 8, 50, 65, 444
Lsp1109I GCAGC 3 cut(s) 203, 284, 554
LweI GCATC 2 cut(s) 357, 700
MaeII ACGT 2 cut(s) 117, 647
MaeIII GTNAC 1 cut(s) 88
MalI GATC 8 cut(s) 27, 157, 313, 395, 433, 536, 629, 774
MbiI CCGCTC 1 cut(s) 102
MboI GATC 8 cut(s) 25, 155, 311, 393, 431, 534, 627, 772
MfeI CAATTG 1 cut(s) 322
MflI RGATCY 2 cut(s) 155, 431
MhlI GDGCHC 1 cut(s) 449
MlsI TGGCCA 1 cut(s) 867
MluCI AATT 3 cut(s) 322, 472, 561
MluNI TGGCCA 1 cut(s) 867
MlyI GAGTC 1 cut(s) 831
MmeI TCCRAC 1 cut(s) 211
MnlI CCTC 8 cut(s) 83, 107, 115, 148, 344, 476, 608, 905
Mox20I TGGCCA 1 cut(s) 867
MreI CGCCGGCG 1 cut(s) 512
MroI TCCGGA 1 cut(s) 428
MroNI GCCGGC 1 cut(s) 512
MscI TGGCCA 1 cut(s) 867
MslI CAYNNNNRTG 2 cut(s) 116, 596
Msp20I TGGCCA 1 cut(s) 867
MspR9I CCNGG 4 cut(s) 260, 261, 362, 612
MunI CAATTG 1 cut(s) 322
Mva1269I GAATGC 1 cut(s) 338
MvnI CGCG 4 cut(s) 83, 174, 204, 551
MwoI GCNNNNNNNGC 8 cut(s) 17, 108, 213, 225, 245, 305, 564, 911
NaeI GCCGGC 1 cut(s) 514
NciI CCSGG 4 cut(s) 260, 261, 362, 612
NcoI CCATGG 1 cut(s) 440
NdeII GATC 8 cut(s) 25, 155, 311, 393, 431, 534, 627, 772
NgoMIV GCCGGC 1 cut(s) 512
NlaIII CATG 3 cut(s) 444, 610, 713
NlaIV GGNNCC 3 cut(s) 223, 433, 684
NmeAIII GCCGAG 1 cut(s) 87
OliI CACNNNNGTG 1 cut(s) 596
PcsI WCGNNNNNNNCGW 5 cut(s) 114, 171, 297, 783, 894
PctI GAATGC 1 cut(s) 338
PdiI GCCGGC 1 cut(s) 514
PfeI GAWTC 3 cut(s) 518, 663, 748
PflFI GACNNNGTC 1 cut(s) 299
PkrI GCNGC 6 cut(s) 173, 206, 218, 221, 274, 569
PleI GAGTC 1 cut(s) 830
PpsI GAGTC 1 cut(s) 830
Psp124BI GAGCTC 1 cut(s) 449
PspN4I GGNNCC 3 cut(s) 223, 433, 684
PsuI RGATCY 2 cut(s) 155, 431
PsyI GACNNNGTC 1 cut(s) 299
RseI CAYNNNNRTG 2 cut(s) 116, 596
SacI GAGCTC 1 cut(s) 449
SatI GCNGC 6 cut(s) 172, 205, 217, 220, 273, 568
Sau3AI GATC 8 cut(s) 25, 155, 311, 393, 431, 534, 627, 772
SchI GAGTC 1 cut(s) 831
ScrFI CCNGG 4 cut(s) 260, 261, 362, 612
SduI GDGCHC 1 cut(s) 449
SfaNI GCATC 2 cut(s) 357, 700
SgrAI CRCCGGYG 3 cut(s) 224, 512, 806
SmaI CCCGGG 1 cut(s) 261
SmiMI CAYNNNNRTG 2 cut(s) 116, 596
SmlI CTYRAG 1 cut(s) 74
SmoI CTYRAG 1 cut(s) 74
Sse9I AATT 3 cut(s) 322, 472, 561
SstI GAGCTC 1 cut(s) 449
StyD4I CCNGG 4 cut(s) 258, 259, 360, 610
StyI CCWWGG 2 cut(s) 372, 440
TaaI ACNGT 1 cut(s) 33
TaiI ACGT 2 cut(s) 120, 650
TaqI TCGA 9 cut(s) 24, 291, 310, 384, 468, 537, 620, 897, 918
TaqII GACCGA 1 cut(s) 155
TasI AATT 3 cut(s) 322, 472, 561
TauI GCSGC 3 cut(s) 174, 207, 222
TfiI GAWTC 3 cut(s) 518, 663, 748
TscAI CASTG 2 cut(s) 603, 847
TseI GCWGC 3 cut(s) 216, 272, 567
TspDTI ATGAA 4 cut(s) 174, 555, 638, 841
TspGWI ACGGA 1 cut(s) 277
TspMI CCCGGG 1 cut(s) 259
TspRI CASTG 2 cut(s) 603, 847
Tth111I GACNNNGTC 1 cut(s) 299
XmaI CCCGGG 1 cut(s) 259
XmiI GTMKAC 1 cut(s) 267
ZraI GACGTC 1 cut(s) 648
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.