Basic Information

Type: gene

Biological Identity

Species

rosa_roxburghii

Chromosome

GWHEROQ00000164

Orthogroup ID

OG0014381

Physical Location & Seq

Genomic Coordinates Forward (+)

161922 .. 162840

Gene Structure 919 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rroxscaffold_164G00436200.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 744 bp

ATGGCGGAAACCACCACCACCGCACGGCCCCTCAAAATCATCGCCGGCGCCGACTCCTTCGGCTGTTCACTCAAAGACGCCCTGGTCTCCCACCTCCGCTCCCTCAACATCGACGTCGAGGACCTCGGCACCTCCTCCTACTACTCCATCGCCGCCGACGTCGGCCGCCGCGTCTCCTCCTCCTCCGCCAACGTCGAAACTCGCGGACTCGTCGCCTGTGGCACTGGCGTCGGCGTCGCGATCTTCGCCAACAAGTTCCCCGGAGTCTTCGCCGCCACGTGTCTCTCCCCTCCGACGCCCTTAACGCCCGGTCCATCAACAACTCCAACGTCCTCGCCGTCTCCGGCATGTCGACCTCGCCGGAATCCGCCGTCGAGATCCTCGACACGTGGCTCAACACTCCCTTCAAAGCGCCGTGTCCGGCATATTGAGGAGACTCCCACATCGGCCATAGTTAGGTTTAAGGCCGGGAGCGTGGAGCCGGCTCATCACCACACTTTCGGGCACGATTTGGTTGTGTTGGAGGGGAAGAAGAGTGTGTGGAATTTAACTAAGAAGGAGAGATTTGATCTAGTTGTTGGGGATTACTTGTTTACTCCAGCTGGGGATGTGCATAGAGTCAAGTATTATGAAGATACCGAGTTCTTTATCAAGTGGGATGGGAAATGGGATATGTTCTTCGATGAAGATCTCGAGACTGCGAAGAAGGCTGTTGATCAAGCACTGGAGGATGAGGGTAAGTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005737 GO:0005829 GO:0006950 GO:0008150 GO:0009266 GO:0009409 GO:0009628 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044424 GO:0044444 GO:0044464 GO:0050896

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Cupin_2 Cupin_7 LacAB_rpiB

Protein Analysis

247

Amino Acids

26.86

Weight (kDa)

7.71

Isoelectric Point (pI)

55.84

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
LacAB_rpiB	PF02502	13 - 97	3.4e-17	Ribose/Galactose Isomerase
Cupin_7	PF12973	144 - 216	7.7e-07	ChrR Cupin-like domain
Cupin_2	PF07883	151 - 211	9.4e-07	Cupin domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0014381)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G04880
fragaria_vesca	FvH4_6g03430
malus_domestica	MD12G1237200.v1.1
prunus_persica	Prupe.6G339900_v2.0.a1
pyrus_communis	pycom12g21810
rosa_chinensis	RchiOBHm_Chr3g0451931
rosa_laevigata	RLG00000025637
rosa_multiflora	Rmu_sc0002901.1_g000002 Rmu_ssc0000467.1_g000022
rosa_roxburghii	Rroxscaffold_164G00436200 Rroxscaffold_6G00429100
rosa_rugosa	Rorug02G0637500
rosa_samantha	Rh3AG039200 Rh3BG040500 Rh3CG039000 Rh3DG039700
rosa_wichuraiana	Rw3G002930

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AasI	GACNNNNNNGTC	1 cut(s)	83
AatII	GACGTC	2 cut(s)	117, 162
AccB1I	GGYRCC	2 cut(s)	47, 128
AccBSI	CCGCTC	1 cut(s)	99
AccI	GTMKAC	1 cut(s)	352
AccII	CGCG	3 cut(s)	171, 204, 239
AclWI	GGATC	1 cut(s)	372
AcoI	YGGCCR	2 cut(s)	163, 447
AcsI	RAATTY	1 cut(s)	544
AcvI	CACGTG	2 cut(s)	279, 389
AcyI	GRCGYC	7 cut(s)	48, 78, 114, 159, 228, 234, 296
AfiI	CCNNNNNNNGG	2 cut(s)	24, 456
AflIII	ACRYGT	2 cut(s)	278, 386
AgsI	TTSAA	1 cut(s)	408
AjnI	CCWGG	1 cut(s)	81
AluBI	AGCT	1 cut(s)	602
AluI	AGCT	1 cut(s)	602
Alw26I	GTCTC	6 cut(s)	91, 178, 287, 345, 428, 689
AlwI	GGATC	1 cut(s)	372
Ama87I	CYCGRG	1 cut(s)	692
AoxI	GGCC	4 cut(s)	26, 163, 447, 465
ApoI	RAATTY	1 cut(s)	544
AspLEI	GCGC	2 cut(s)	50, 414
AspS9I	GGNCC	3 cut(s)	27, 121, 311
AsuC2I	CCSGG	3 cut(s)	261, 309, 469
AsuHPI	GGTGA	1 cut(s)	482
AvaI	CYCGRG	1 cut(s)	692
AvaII	GGWCC	2 cut(s)	121, 311
BaeGI	GKGCMC	1 cut(s)	507
BanI	GGYRCC	2 cut(s)	47, 128
BbrPI	CACGTG	2 cut(s)	279, 389
BbsI	GAAGAC	1 cut(s)	259
BccI	CCATC	3 cut(s)	155, 322, 653
BceAI	ACGGC	4 cut(s)	41, 322, 355, 399
BcgI	CGANNNNNNTGC	2 cut(s)	211, 245
BciT130I	CCWGG	1 cut(s)	83
BclI	TGATCA	1 cut(s)	715
BcnI	CCSGG	3 cut(s)	261, 309, 469
BcoDI	GTCTC	6 cut(s)	91, 178, 287, 345, 428, 689
BfaI	CTAG	1 cut(s)	572
BfoI	RGCGCY	2 cut(s)	51, 415
BglII	AGATCT	1 cut(s)	688
BisI	GCNGC	4 cut(s)	153, 166, 169, 273
BlsI	GCNGC	4 cut(s)	154, 167, 170, 274
Bme1390I	CCNGG	4 cut(s)	83, 261, 309, 469
Bme18I	GGWCC	2 cut(s)	121, 311
BmeT110I	CYCGRG	1 cut(s)	692
BmgT120I	GGNCC	3 cut(s)	27, 121, 311
BmiI	GGNNCC	4 cut(s)	29, 49, 130, 480
BmrFI	CCNGG	4 cut(s)	83, 261, 309, 469
BpiI	GAAGAC	1 cut(s)	259
BpmI	CTGGAG	1 cut(s)	582
BpuMI	CCSGG	3 cut(s)	261, 309, 469
BsaAI	YACGTR	2 cut(s)	279, 389
BsaBI	GATNNNNATC	1 cut(s)	687
BsaHI	GRCGYC	7 cut(s)	48, 78, 114, 159, 228, 234, 296
BsaI	GGTCTC	1 cut(s)	91
BsaJI	CCNNGG	3 cut(s)	81, 124, 259
BsaXI	ACNNNNNCTCC	2 cut(s)	83, 113
Bsc4I	CCNNNNNNNGG	2 cut(s)	24, 456
Bse118I	RCCGGY	2 cut(s)	44, 481
Bse1I	ACTGG	2 cut(s)	229, 729
Bse8I	GATNNNNATC	1 cut(s)	687
BseBI	CCWGG	1 cut(s)	83
BseDI	CCNNGG	3 cut(s)	81, 124, 259
BseGI	GGATG	3 cut(s)	613, 664, 736
BseJI	GATNNNNATC	1 cut(s)	687
BseLI	CCNNNNNNNGG	2 cut(s)	24, 456
BseNI	ACTGG	2 cut(s)	229, 729
BseRI	GAGGAG	5 cut(s)	124, 166, 169, 172, 446
BseSI	GKGCMC	1 cut(s)	507
BseX3I	CGGCCG	1 cut(s)	163
BseYI	CCCAGC	1 cut(s)	602
Bsh1236I	CGCG	3 cut(s)	171, 204, 239
Bsh1285I	CGRYCG	1 cut(s)	166
BshFI	GGCC	4 cut(s)	28, 165, 449, 467
BshNI	GGYRCC	2 cut(s)	47, 128
BsiEI	CGRYCG	1 cut(s)	166
BsiHKCI	CYCGRG	1 cut(s)	692
BsiSI	CCGG	8 cut(s)	45, 261, 309, 344, 361, 421, 468, 482
BslI	CCNNNNNNNGG	2 cut(s)	24, 456
BsmAI	GTCTC	6 cut(s)	91, 178, 287, 345, 428, 689
BsmBI	CGTCTC	2 cut(s)	178, 345
BsnI	GGCC	4 cut(s)	28, 165, 449, 467
Bso31I	GGTCTC	1 cut(s)	91
BsoBI	CYCGRG	1 cut(s)	692
Bsp1286I	GDGCHC	1 cut(s)	507
Bsp143I	GATC	5 cut(s)	240, 377, 568, 688, 715
Bsp68I	TCGCGA	1 cut(s)	239
BspANI	GGCC	4 cut(s)	28, 165, 449, 467
BspFNI	CGCG	3 cut(s)	171, 204, 239
BspLI	GGNNCC	4 cut(s)	29, 49, 130, 480
BspPI	GGATC	1 cut(s)	372
BspT107I	GGYRCC	2 cut(s)	47, 128
BspTNI	GGTCTC	1 cut(s)	91
BsrBI	CCGCTC	1 cut(s)	99
BsrFI	RCCGGY	2 cut(s)	44, 481
BsrI	ACTGG	2 cut(s)	229, 729
BssAI	RCCGGY	2 cut(s)	44, 481
BssECI	CCNNGG	3 cut(s)	81, 124, 259
BssMI	GATC	5 cut(s)	240, 377, 568, 688, 715
BssNI	GRCGYC	7 cut(s)	48, 78, 114, 159, 228, 234, 296
Bst2UI	CCWGG	1 cut(s)	83
Bst6I	CTCTTC	1 cut(s)	527
BstACI	GRCGYC	7 cut(s)	48, 78, 114, 159, 228, 234, 296
BstBAI	YACGTR	2 cut(s)	279, 389
BstC8I	GCNNGC	2 cut(s)	46, 483
BstDEI	CTNAG	1 cut(s)	552
BstF5I	GGATG	3 cut(s)	613, 664, 736
BstFNI	CGCG	3 cut(s)	171, 204, 239
BstH2I	RGCGCY	2 cut(s)	51, 415
BstHHI	GCGC	2 cut(s)	50, 414
BstKTI	GATC	5 cut(s)	243, 380, 571, 691, 718
BstMAI	GTCTC	6 cut(s)	91, 178, 287, 345, 428, 689
BstMBI	GATC	5 cut(s)	240, 377, 568, 688, 715
BstMCI	CGRYCG	1 cut(s)	166
BstMWI	GCNNNNNNNGC	3 cut(s)	245, 304, 707
BstNI	CCWGG	1 cut(s)	83
BstNSI	RCATGY	1 cut(s)	351
BstSCI	CCNGG	4 cut(s)	81, 259, 307, 467
BstSLI	GKGCMC	1 cut(s)	507
BstUI	CGCG	3 cut(s)	171, 204, 239
BstV2I	GAAGAC	1 cut(s)	259
BstX2I	RGATCY	2 cut(s)	377, 688
BstYI	RGATCY	2 cut(s)	377, 688
BstZI	CGGCCG	1 cut(s)	163
BsuRI	GGCC	4 cut(s)	28, 165, 449, 467
BtgZI	GCGATG	2 cut(s)	25, 133
BtsCI	GGATG	3 cut(s)	613, 664, 736
BtsIMutI	CAGTG	2 cut(s)	222, 722
BtuMI	TCGCGA	1 cut(s)	239
Cac8I	GCNNGC	2 cut(s)	46, 483
CfoI	GCGC	2 cut(s)	50, 414
Cfr10I	RCCGGY	2 cut(s)	44, 481
Cfr13I	GGNCC	3 cut(s)	27, 121, 311
CseI	GACGC	5 cut(s)	86, 160, 217, 223, 304
CviAII	CATG	1 cut(s)	348
DdeI	CTNAG	1 cut(s)	552
DinI	GGCGCC	1 cut(s)	49
DpnI	GATC	5 cut(s)	242, 379, 570, 690, 717
DpnII	GATC	5 cut(s)	240, 377, 568, 688, 715
DrdI	GACNNNNNNGTC	1 cut(s)	83
DseDI	GACNNNNNNGTC	1 cut(s)	83
EaeI	YGGCCR	2 cut(s)	163, 447
EagI	CGGCCG	1 cut(s)	163
Eam1104I	CTCTTC	1 cut(s)	527
EarI	CTCTTC	1 cut(s)	527
EciI	GGCGGA	3 cut(s)	20, 175, 357
EclXI	CGGCCG	1 cut(s)	163
Eco31I	GGTCTC	1 cut(s)	91
Eco47I	GGWCC	2 cut(s)	121, 311
Eco52I	CGGCCG	1 cut(s)	163
Eco72I	CACGTG	2 cut(s)	279, 389
Eco88I	CYCGRG	1 cut(s)	692
EcoO109I	RGGNCCY	1 cut(s)	121
EcoRII	CCWGG	1 cut(s)	81
EgeI	GGCGCC	1 cut(s)	49
EheI	GGCGCC	1 cut(s)	49
Esp3I	CGTCTC	2 cut(s)	178, 345
FaeI	CATG	1 cut(s)	351
FaiI	YATR	6 cut(s)	349, 426, 452, 615, 630, 674
FatI	CATG	1 cut(s)	347
FbaI	TGATCA	1 cut(s)	715
FblI	GTMKAC	1 cut(s)	352
Fnu4HI	GCNGC	4 cut(s)	153, 166, 169, 273
FokI	GGATG	2 cut(s)	620, 671
Fsp4HI	GCNGC	4 cut(s)	153, 166, 169, 273
FspBI	CTAG	1 cut(s)	572
GlaI	GCGC	2 cut(s)	49, 413
GluI	GCNGC	4 cut(s)	153, 166, 169, 273
GsaI	CCCAGC	1 cut(s)	606
GsuI	CTGGAG	1 cut(s)	582
HaeII	RGCGCY	2 cut(s)	51, 415
HaeIII	GGCC	4 cut(s)	28, 165, 449, 467
HapII	CCGG	8 cut(s)	45, 261, 309, 344, 361, 421, 468, 482
HgaI	GACGC	5 cut(s)	86, 160, 217, 223, 304
HhaI	GCGC	2 cut(s)	50, 414
Hin1I	GRCGYC	7 cut(s)	48, 78, 114, 159, 228, 234, 296
Hin1II	CATG	1 cut(s)	351
Hin6I	GCGC	2 cut(s)	48, 412
HinP1I	GCGC	2 cut(s)	48, 412
HincII	GTYRAC	1 cut(s)	353
HindII	GTYRAC	1 cut(s)	353
HinfI	GANTC	6 cut(s)	53, 207, 264, 364, 436, 618
HpaII	CCGG	8 cut(s)	45, 261, 309, 344, 361, 421, 468, 482
HphI	GGTGA	1 cut(s)	482
Hpy166II	GTNNAC	3 cut(s)	68, 353, 594
Hpy188I	TCNGA	1 cut(s)	294
Hpy188III	TCNNGA	4 cut(s)	238, 375, 692, 694
Hpy8I	GTNNAC	3 cut(s)	68, 353, 594
HpyAV	CCTTC	4 cut(s)	67, 414, 550, 700
HpyCH4IV	ACGT	6 cut(s)	114, 159, 192, 278, 329, 388
HpyCH4V	TGCA	1 cut(s)	613
HpyF10VI	GCNNNNNNNGC	3 cut(s)	245, 304, 707
HpyF3I	CTNAG	1 cut(s)	552
HpySE526I	ACGT	6 cut(s)	114, 159, 192, 278, 329, 388
Hsp92I	GRCGYC	7 cut(s)	48, 78, 114, 159, 228, 234, 296
Hsp92II	CATG	1 cut(s)	351
HspAI	GCGC	2 cut(s)	48, 412
KasI	GGCGCC	1 cut(s)	47
KroI	GCCGGC	2 cut(s)	44, 481
KroNI	GCCGGC	2 cut(s)	46, 483
Ksp22I	TGATCA	1 cut(s)	715
Kzo9I	GATC	5 cut(s)	240, 377, 568, 688, 715
LmnI	GCTCC	3 cut(s)	104, 471, 478
MaeI	CTAG	1 cut(s)	572
MaeII	ACGT	6 cut(s)	114, 159, 192, 278, 329, 388
MalI	GATC	5 cut(s)	242, 379, 570, 690, 717
MbiI	CCGCTC	1 cut(s)	99
MboI	GATC	5 cut(s)	240, 377, 568, 688, 715
MboII	GAAGA	8 cut(s)	235, 259, 541, 544, 644, 670, 698, 715
MflI	RGATCY	2 cut(s)	377, 688
MhlI	GDGCHC	1 cut(s)	507
MluCI	AATT	1 cut(s)	544
Mly113I	GGCGCC	1 cut(s)	48
MlyI	GAGTC	5 cut(s)	47, 201, 273, 430, 627
MmeI	TCCRAC	3 cut(s)	317, 350, 501
MreI	CGCCGGCG	1 cut(s)	44
MroNI	GCCGGC	2 cut(s)	44, 481
MseI	TTAA	3 cut(s)	302, 462, 548
MspA1I	CMGCKG	1 cut(s)	602
MspI	CCGG	8 cut(s)	45, 261, 309, 344, 361, 421, 468, 482
MspR9I	CCNGG	4 cut(s)	83, 261, 309, 469
MvaI	CCWGG	1 cut(s)	83
MvnI	CGCG	3 cut(s)	171, 204, 239
MwoI	GCNNNNNNNGC	3 cut(s)	245, 304, 707
NaeI	GCCGGC	2 cut(s)	46, 483
NarI	GGCGCC	1 cut(s)	48
NciI	CCSGG	3 cut(s)	261, 309, 469
NdeII	GATC	5 cut(s)	240, 377, 568, 688, 715
NgoMIV	GCCGGC	2 cut(s)	44, 481
NlaIII	CATG	1 cut(s)	351
NlaIV	GGNNCC	4 cut(s)	29, 49, 130, 480
NmeAIII	GCCGAG	1 cut(s)	105
NruI	TCGCGA	1 cut(s)	239
NspI	RCATGY	1 cut(s)	351
PaeR7I	CTCGAG	1 cut(s)	692
PcsI	WCGNNNNNNNCGW	5 cut(s)	48, 156, 168, 335, 380
PdiI	GCCGGC	2 cut(s)	46, 483
PfeI	GAWTC	1 cut(s)	364
PkrI	GCNGC	4 cut(s)	154, 167, 170, 274
PleI	GAGTC	5 cut(s)	47, 201, 272, 430, 626
PluTI	GGCGCC	1 cut(s)	51
PmaCI	CACGTG	2 cut(s)	279, 389
PmlI	CACGTG	2 cut(s)	279, 389
PpsI	GAGTC	5 cut(s)	47, 201, 272, 430, 626
Ppu21I	YACGTR	2 cut(s)	279, 389
PpuMI	RGGWCCY	1 cut(s)	121
Psp5II	RGGWCCY	1 cut(s)	121
Psp6I	CCWGG	1 cut(s)	81
PspCI	CACGTG	2 cut(s)	279, 389
PspFI	CCCAGC	1 cut(s)	602
PspGI	CCWGG	1 cut(s)	81
PspN4I	GGNNCC	4 cut(s)	29, 49, 130, 480
PspPI	GGNCC	3 cut(s)	27, 121, 311
PspPPI	RGGWCCY	1 cut(s)	121
PsuI	RGATCY	2 cut(s)	377, 688
PvuII	CAGCTG	1 cut(s)	602
RruI	TCGCGA	1 cut(s)	239
SalI	GTCGAC	1 cut(s)	351
SaqAI	TTAA	3 cut(s)	302, 462, 548
SatI	GCNGC	4 cut(s)	153, 166, 169, 273
Sau3AI	GATC	5 cut(s)	240, 377, 568, 688, 715
Sau96I	GGNCC	3 cut(s)	27, 121, 311
SchI	GAGTC	5 cut(s)	47, 201, 273, 430, 627
ScrFI	CCNGG	4 cut(s)	83, 261, 309, 469
SduI	GDGCHC	1 cut(s)	507
SfoI	GGCGCC	1 cut(s)	49
Sfr274I	CTCGAG	1 cut(s)	692
SgrAI	CRCCGGYG	1 cut(s)	44
SinI	GGWCC	2 cut(s)	121, 311
SlaI	CTCGAG	1 cut(s)	692
SmlI	CTYRAG	1 cut(s)	692
SmoI	CTYRAG	1 cut(s)	692
Sse9I	AATT	1 cut(s)	544
SspDI	GGCGCC	1 cut(s)	47
SspMI	CTAG	1 cut(s)	572
StyD4I	CCNGG	4 cut(s)	81, 259, 307, 467
TaiI	ACGT	6 cut(s)	117, 162, 195, 281, 332, 391
TaqI	TCGA	8 cut(s)	111, 117, 195, 352, 374, 383, 681, 693
TasI	AATT	1 cut(s)	544
TauI	GCSGC	4 cut(s)	155, 168, 171, 275
TfiI	GAWTC	1 cut(s)	364
Tru1I	TTAA	3 cut(s)	302, 462, 548
Tru9I	TTAA	3 cut(s)	302, 462, 548
TscAI	CASTG	2 cut(s)	229, 729
TspDTI	ATGAA	2 cut(s)	645, 699
TspRI	CASTG	2 cut(s)	229, 729
VpaK11BI	GGWCC	2 cut(s)	121, 311
XapI	RAATTY	1 cut(s)	544
XceI	RCATGY	1 cut(s)	351
XhoI	CTCGAG	1 cut(s)	692
XmiI	GTMKAC	1 cut(s)	352
XspI	CTAG	1 cut(s)	572
ZraI	GACGTC	2 cut(s)	115, 160

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.