Prupe.6G339900_v2.0.a1

DNA-damage-repair toleration protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
prunus_persica
Pp06
OG0014381
Physical Location & Seq
Forward (+)
29396900 .. 29398317
1418 bp
Loading structure...
UTR
Exon/CDS
Intron
Prupe.6G339900.1

Sequence Viewer

Length: 942 bp
ATGGCCGAGGAAGCGAGCACTAAGCGCCCACTGAAAATCGTAGCAGGCGCCGACTCCTTTGGCTGCTCTCTCAAAGATGCCTTAGTCTCCCACCTCCGCTCTCTCAACATCGACGTCGAAGACCTCGGTACCTCCTCCTACTACTCCATCGCCGCCGATGTCGGCCGCCGCGTCTCCTCCTCCTCTGACGGCGCCGTCGAAACCCGCGGCCTCGTCGCCTGCGGCACCGGCGTCGGAGTCGCCATCTTCGCCAACAAGTTCCCGGGCGTGTTCGCCGCCACGTGTCTCAACCCCTCCGAAGCCCAAAACGCTCGCTCCATCAACAACTCCAACGTCCTCGCCGTCTCCGGCATGTCCACGGCACCGGACTCCGCCATCGAGATCCTCGACACCTGGCTCAACACCCCTTTCAAATCCCCCTGTCCCGCCTCCGACTCCAAGCCCTGGCCTCCAGAAATCGAGACTTTTCTCGACAATTCGATTAAAGAAATGCCCAAAATTGGAGCTGAAGAAGAAAAGCAAGCAGCTTTGGGTTCGGAGGAGGCTTCTTGTACTCTGTGTTGTTTGGTGAAGAATCGGAAACTGAACCCGATTGATATTATTCCTGGTGGGTCGATGAAGATTCTGAGAGAGACTCCAACATCGGCGATAGTCAGGTTCAAGGCCGGGAGCGTCGAGCCTGCGCATCACCACACGTTTGGGCACGACTTGGTTGTGTTGGAGGGGAAGAAGAGCGTGTGGAATTTGACGAAGAAGGCGAGGTACGATCTGGGTGTTGGAGATTACTTGTTTACACCAGCTGGGGATTCGCACAGAGTCAAGTACTATGAGGATACTGAGTTTTTTATAAAATGGGAGGGCCAGTGGGATATGTTCTTTGATGAGGAACTTGAGGCTGCACACAAGGCTGTTGCGCAGGAATTGGAGAATGGGTCGAACTGA

Protein Analysis

314

Amino Acids

33.85

Weight (kDa)

5.12

Isoelectric Point (pI)

48.27

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0014381)

Species Orthologous Gene IDs
arabidopsis_thaliana AT3G04880
fragaria_vesca FvH4_6g03430
malus_domestica MD12G1237200.v1.1
prunus_persica Prupe.6G339900_v2.0.a1
pyrus_communis pycom12g21810
rosa_chinensis RchiOBHm_Chr3g0451931
rosa_laevigata RLG00000025637
rosa_multiflora Rmu_sc0002901.1_g000002 Rmu_ssc0000467.1_g000022
rosa_roxburghii Rroxscaffold_164G00436200 Rroxscaffold_6G00429100
rosa_rugosa Rorug02G0637500
rosa_samantha Rh3AG039200 Rh3BG040500 Rh3CG039000 Rh3DG039700
rosa_wichuraiana Rw3G002930

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 1 cut(s) 848
AasI GACNNNNNNGTC 1 cut(s) 194
AatII GACGTC 1 cut(s) 117
Acc16I TGCGCA 2 cut(s) 684, 915
Acc65I GGTACC 1 cut(s) 128
AccB1I GGYRCC 5 cut(s) 47, 128, 191, 224, 361
AccB7I CCANNNNNTGG 1 cut(s) 444
AccBSI CCGCTC 1 cut(s) 99
AccII CGCG 2 cut(s) 171, 207
AclWI GGATC 1 cut(s) 376
AcoI YGGCCR 2 cut(s) 3, 163
AcsI RAATTY 1 cut(s) 742
AcuI CTGAAG 1 cut(s) 528
AcvI CACGTG 1 cut(s) 282
AcyI GRCGYC 4 cut(s) 48, 114, 192, 231
AfaI GTAC 4 cut(s) 130, 553, 764, 824
AfiI CCNNNNNNNGG 2 cut(s) 444, 500
AflIII ACRYGT 2 cut(s) 281, 693
AgsI TTSAA 2 cut(s) 412, 661
AjnI CCWGG 3 cut(s) 392, 443, 604
AluBI AGCT 3 cut(s) 506, 527, 800
AluI AGCT 3 cut(s) 506, 527, 800
Alw21I GWGCWC 1 cut(s) 20
Alw26I GTCTC 6 cut(s) 91, 178, 290, 349, 455, 626
AlwI GGATC 1 cut(s) 376
Ama87I CYCGRG 1 cut(s) 262
AoxI GGCC 6 cut(s) 3, 163, 208, 446, 663, 859
ApeKI GCWGC 3 cut(s) 63, 524, 896
ApoI RAATTY 1 cut(s) 742
Asp718I GGTACC 1 cut(s) 128
AspLEI GCGC 5 cut(s) 27, 50, 194, 685, 916
AspS9I GGNCC 1 cut(s) 859
AsuC2I CCSGG 3 cut(s) 263, 264, 667
AsuHPI GGTGA 2 cut(s) 580, 680
AvaI CYCGRG 1 cut(s) 262
BaeGI GKGCMC 1 cut(s) 705
BaeI ACNNNNGTAYC 2 cut(s) 112, 145
BanI GGYRCC 5 cut(s) 47, 128, 191, 224, 361
BarI GAAGNNNNNNTAC 2 cut(s) 746, 778
BbrPI CACGTG 1 cut(s) 282
BbsI GAAGAC 1 cut(s) 126
Bbv12I GWGCWC 1 cut(s) 20
BbvI GCAGC 3 cut(s) 50, 536, 883
BccI CCATC 4 cut(s) 155, 251, 326, 383
BceAI ACGGC 4 cut(s) 179, 205, 326, 375
BcgI CGANNNNNNTGC 2 cut(s) 214, 248
BciT130I CCWGG 3 cut(s) 394, 445, 606
BciVI GTATCC 1 cut(s) 826
BcnI CCSGG 3 cut(s) 263, 264, 667
BcoDI GTCTC 6 cut(s) 91, 178, 290, 349, 455, 626
BfoI RGCGCY 3 cut(s) 28, 51, 195
BfuI GTATCC 1 cut(s) 826
BisI GCNGC 9 cut(s) 64, 153, 166, 169, 208, 223, 276, 525, 897
BlsI GCNGC 9 cut(s) 65, 154, 167, 170, 209, 224, 277, 526, 898
BmcAI AGTACT 1 cut(s) 824
Bme1390I CCNGG 6 cut(s) 263, 264, 394, 445, 606, 667
BmeT110I CYCGRG 1 cut(s) 262
BmgT120I GGNCC 1 cut(s) 859
BmiI GGNNCC 5 cut(s) 49, 130, 193, 226, 363
BmrFI CCNGG 6 cut(s) 263, 264, 394, 445, 606, 667
BmsI GCATC 2 cut(s) 67, 694
BpiI GAAGAC 1 cut(s) 126
BplI GAGNNNNNCTC 2 cut(s) 619, 651
BpmI CTGGAG 1 cut(s) 435
BpuEI CTTGAG 1 cut(s) 911
BpuMI CCSGG 3 cut(s) 263, 264, 667
BsaAI YACGTR 1 cut(s) 282
BsaHI GRCGYC 4 cut(s) 48, 114, 192, 231
BsaJI CCNNGG 6 cut(s) 6, 124, 205, 262, 357, 443
BsaWI WCCGGW 1 cut(s) 364
BsaXI ACNNNNNCTCC 5 cut(s) 299, 329, 848, 878, 917
Bsc4I CCNNNNNNNGG 2 cut(s) 444, 500
Bse118I RCCGGY 1 cut(s) 227
Bse1I ACTGG 1 cut(s) 862
BseBI CCWGG 3 cut(s) 394, 445, 606
BseDI CCNNGG 6 cut(s) 6, 124, 205, 262, 357, 443
BseLI CCNNNNNNNGG 2 cut(s) 444, 500
BseMII CTCAG 2 cut(s) 617, 828
BseNI ACTGG 1 cut(s) 862
BseRI GAGGAG 5 cut(s) 124, 166, 169, 172, 554
BseSI GKGCMC 1 cut(s) 705
BseX3I CGGCCG 1 cut(s) 163
BseXI GCAGC 3 cut(s) 50, 536, 883
BseYI CCCAGC 1 cut(s) 800
BsgI GTGCAG 1 cut(s) 882
Bsh1236I CGCG 2 cut(s) 171, 207
Bsh1285I CGRYCG 1 cut(s) 166
BshFI GGCC 6 cut(s) 5, 165, 210, 448, 665, 861
BshNI GGYRCC 5 cut(s) 47, 128, 191, 224, 361
BsiEI CGRYCG 1 cut(s) 166
BsiHKAI GWGCWC 1 cut(s) 20
BsiHKCI CYCGRG 1 cut(s) 262
BsiSI CCGG 5 cut(s) 228, 263, 348, 365, 666
BslFI GGGAC 1 cut(s) 408
BslI CCNNNNNNNGG 2 cut(s) 444, 500
BsmAI GTCTC 6 cut(s) 91, 178, 290, 349, 455, 626
BsmBI CGTCTC 2 cut(s) 178, 349
BsmFI GGGAC 1 cut(s) 408
BsnI GGCC 6 cut(s) 5, 165, 210, 448, 665, 861
BsoBI CYCGRG 1 cut(s) 262
Bsp1286I GDGCHC 2 cut(s) 20, 705
Bsp143I GATC 2 cut(s) 381, 766
BspANI GGCC 6 cut(s) 5, 165, 210, 448, 665, 861
BspCNI CTCAG 2 cut(s) 618, 829
BspFNI CGCG 2 cut(s) 171, 207
BspLI GGNNCC 5 cut(s) 49, 130, 193, 226, 363
BspPI GGATC 1 cut(s) 376
BspQI GCTCTTC 1 cut(s) 725
BspT107I GGYRCC 5 cut(s) 47, 128, 191, 224, 361
BsrBI CCGCTC 1 cut(s) 99
BsrFI RCCGGY 1 cut(s) 227
BsrI ACTGG 1 cut(s) 862
BssAI RCCGGY 1 cut(s) 227
BssECI CCNNGG 6 cut(s) 6, 124, 205, 262, 357, 443
BssMI GATC 2 cut(s) 381, 766
BssNI GRCGYC 4 cut(s) 48, 114, 192, 231
Bst2UI CCWGG 3 cut(s) 394, 445, 606
Bst6I CTCTTC 1 cut(s) 725
BstACI GRCGYC 4 cut(s) 48, 114, 192, 231
BstBAI YACGTR 1 cut(s) 282
BstC8I GCNNGC 6 cut(s) 16, 46, 220, 313, 522, 681
BstDEI CTNAG 4 cut(s) 21, 82, 626, 837
BstDSI CCRYGG 2 cut(s) 205, 357
BstFNI CGCG 2 cut(s) 171, 207
BstH2I RGCGCY 3 cut(s) 28, 51, 195
BstHHI GCGC 5 cut(s) 27, 50, 194, 685, 916
BstKTI GATC 2 cut(s) 384, 769
BstMAI GTCTC 6 cut(s) 91, 178, 290, 349, 455, 626
BstMBI GATC 2 cut(s) 381, 766
BstMCI CGRYCG 1 cut(s) 166
BstMWI GCNNNNNNNGC 6 cut(s) 11, 24, 228, 248, 308, 905
BstNI CCWGG 3 cut(s) 394, 445, 606
BstNSI RCATGY 1 cut(s) 355
BstSCI CCNGG 6 cut(s) 261, 262, 392, 443, 604, 665
BstSLI GKGCMC 1 cut(s) 705
BstUI CGCG 2 cut(s) 171, 207
BstV1I GCAGC 3 cut(s) 50, 536, 883
BstV2I GAAGAC 1 cut(s) 126
BstX2I RGATCY 1 cut(s) 381
BstXI CCANNNNNNTGG 1 cut(s) 698
BstYI RGATCY 1 cut(s) 381
BstZI CGGCCG 1 cut(s) 163
BsuI GTATCC 1 cut(s) 826
BsuRI GGCC 6 cut(s) 5, 165, 210, 448, 665, 861
BtgI CCRYGG 2 cut(s) 205, 357
BtgZI GCGATG 1 cut(s) 133
BtsIMutI CAGTG 2 cut(s) 29, 869
Cac8I GCNNGC 6 cut(s) 16, 46, 220, 313, 522, 681
CfoI GCGC 5 cut(s) 27, 50, 194, 685, 916
Cfr10I RCCGGY 1 cut(s) 227
Cfr13I GGNCC 1 cut(s) 859
Cfr42I CCGCGG 1 cut(s) 208
Cfr9I CCCGGG 1 cut(s) 262
CseI GACGC 3 cut(s) 160, 220, 661
Csp6I GTAC 4 cut(s) 129, 552, 763, 823
CviAII CATG 1 cut(s) 352
CviQI GTAC 4 cut(s) 129, 552, 763, 823
DdeI CTNAG 4 cut(s) 21, 82, 626, 837
DinI GGCGCC 2 cut(s) 49, 193
DpnI GATC 2 cut(s) 383, 768
DpnII GATC 2 cut(s) 381, 766
DrdI GACNNNNNNGTC 1 cut(s) 194
DseDI GACNNNNNNGTC 1 cut(s) 194
EaeI YGGCCR 2 cut(s) 3, 163
EagI CGGCCG 1 cut(s) 163
Eam1104I CTCTTC 1 cut(s) 725
EarI CTCTTC 1 cut(s) 725
EciI GGCGGA 1 cut(s) 361
EclXI CGGCCG 1 cut(s) 163
Eco52I CGGCCG 1 cut(s) 163
Eco57I CTGAAG 1 cut(s) 528
Eco72I CACGTG 1 cut(s) 282
Eco88I CYCGRG 1 cut(s) 262
EcoRII CCWGG 3 cut(s) 392, 443, 604
EgeI GGCGCC 2 cut(s) 49, 193
EheI GGCGCC 2 cut(s) 49, 193
Esp3I CGTCTC 2 cut(s) 178, 349
FaeI CATG 1 cut(s) 355
FaiI YATR 4 cut(s) 353, 828, 848, 872
FaqI GGGAC 1 cut(s) 408
FatI CATG 1 cut(s) 351
FauI CCCGC 2 cut(s) 212, 433
Fnu4HI GCNGC 9 cut(s) 64, 153, 166, 169, 208, 223, 276, 525, 897
Fsp4HI GCNGC 9 cut(s) 64, 153, 166, 169, 208, 223, 276, 525, 897
FspI TGCGCA 2 cut(s) 684, 915
GlaI GCGC 5 cut(s) 26, 49, 193, 684, 915
GluI GCNGC 9 cut(s) 64, 153, 166, 169, 208, 223, 276, 525, 897
GsaI CCCAGC 1 cut(s) 804
GsuI CTGGAG 1 cut(s) 435
HaeII RGCGCY 3 cut(s) 28, 51, 195
HaeIII GGCC 6 cut(s) 5, 165, 210, 448, 665, 861
HapII CCGG 5 cut(s) 228, 263, 348, 365, 666
HgaI GACGC 3 cut(s) 160, 220, 661
HhaI GCGC 5 cut(s) 27, 50, 194, 685, 916
Hin1I GRCGYC 4 cut(s) 48, 114, 192, 231
Hin1II CATG 1 cut(s) 355
Hin6I GCGC 5 cut(s) 25, 48, 192, 683, 914
HinP1I GCGC 5 cut(s) 25, 48, 192, 683, 914
HinfI GANTC 9 cut(s) 53, 237, 368, 434, 574, 622, 634, 806, 816
HpaII CCGG 5 cut(s) 228, 263, 348, 365, 666
HphI GGTGA 2 cut(s) 580, 680
Hpy166II GTNNAC 2 cut(s) 357, 792
Hpy188I TCNGA 7 cut(s) 187, 236, 298, 433, 538, 579, 627
Hpy188III TCNNGA 4 cut(s) 379, 452, 460, 470
Hpy8I GTNNAC 2 cut(s) 357, 792
Hpy99I CGWCG 6 cut(s) 116, 119, 200, 218, 236, 677
HpyAV CCTTC 1 cut(s) 748
HpyCH4IV ACGT 4 cut(s) 114, 281, 333, 695
HpyCH4V TGCA 1 cut(s) 899
HpyF10VI GCNNNNNNNGC 6 cut(s) 11, 24, 228, 248, 308, 905
HpyF3I CTNAG 4 cut(s) 21, 82, 626, 837
HpySE526I ACGT 4 cut(s) 114, 281, 333, 695
Hsp92I GRCGYC 4 cut(s) 48, 114, 192, 231
Hsp92II CATG 1 cut(s) 355
HspAI GCGC 5 cut(s) 25, 48, 192, 683, 914
KasI GGCGCC 2 cut(s) 47, 191
KpnI GGTACC 1 cut(s) 132
KspI CCGCGG 1 cut(s) 208
Kzo9I GATC 2 cut(s) 381, 766
LguI GCTCTTC 1 cut(s) 725
LmnI GCTCC 3 cut(s) 320, 503, 669
Lsp1109I GCAGC 3 cut(s) 50, 536, 883
LweI GCATC 2 cut(s) 67, 694
MaeII ACGT 4 cut(s) 114, 281, 333, 695
MalI GATC 2 cut(s) 383, 768
MbiI CCGCTC 1 cut(s) 99
MboI GATC 2 cut(s) 381, 766
MboII GAAGA 9 cut(s) 131, 238, 521, 524, 583, 631, 739, 742, 763
MflI RGATCY 1 cut(s) 381
MhlI GDGCHC 2 cut(s) 20, 705
MluCI AATT 4 cut(s) 475, 498, 742, 920
Mly113I GGCGCC 2 cut(s) 48, 192
MlyI GAGTC 6 cut(s) 47, 246, 362, 428, 628, 825
MmeI TCCRAC 6 cut(s) 214, 354, 456, 662, 699, 757
MseI TTAA 1 cut(s) 483
MspA1I CMGCKG 2 cut(s) 207, 800
MspI CCGG 5 cut(s) 228, 263, 348, 365, 666
MspR9I CCNGG 6 cut(s) 263, 264, 394, 445, 606, 667
MvaI CCWGG 3 cut(s) 394, 445, 606
MvnI CGCG 2 cut(s) 171, 207
MwoI GCNNNNNNNGC 6 cut(s) 11, 24, 228, 248, 308, 905
NarI GGCGCC 2 cut(s) 48, 192
NciI CCSGG 3 cut(s) 263, 264, 667
NdeII GATC 2 cut(s) 381, 766
NlaIII CATG 1 cut(s) 355
NlaIV GGNNCC 5 cut(s) 49, 130, 193, 226, 363
NmeAIII GCCGAG 1 cut(s) 31
NsbI TGCGCA 2 cut(s) 684, 915
NspI RCATGY 1 cut(s) 355
PciSI GCTCTTC 1 cut(s) 725
PcsI WCGNNNNNNNCGW 5 cut(s) 168, 195, 339, 384, 755
PfeI GAWTC 3 cut(s) 574, 622, 806
PflMI CCANNNNNTGG 1 cut(s) 444
PkrI GCNGC 9 cut(s) 65, 154, 167, 170, 209, 224, 277, 526, 898
PleI GAGTC 6 cut(s) 47, 245, 362, 428, 628, 824
PluTI GGCGCC 2 cut(s) 51, 195
PmaCI CACGTG 1 cut(s) 282
PmlI CACGTG 1 cut(s) 282
PpsI GAGTC 6 cut(s) 47, 245, 362, 428, 628, 824
Ppu21I YACGTR 1 cut(s) 282
PsiI TTATAA 1 cut(s) 848
Psp6I CCWGG 3 cut(s) 392, 443, 604
PspCI CACGTG 1 cut(s) 282
PspFI CCCAGC 1 cut(s) 800
PspGI CCWGG 3 cut(s) 392, 443, 604
PspN4I GGNNCC 5 cut(s) 49, 130, 193, 226, 363
PspPI GGNCC 1 cut(s) 859
PsuI RGATCY 1 cut(s) 381
PvuII CAGCTG 1 cut(s) 800
RsaI GTAC 4 cut(s) 130, 553, 764, 824
RsaNI GTAC 4 cut(s) 129, 552, 763, 823
SacII CCGCGG 1 cut(s) 208
SapI GCTCTTC 1 cut(s) 725
SaqAI TTAA 1 cut(s) 483
SatI GCNGC 9 cut(s) 64, 153, 166, 169, 208, 223, 276, 525, 897
Sau3AI GATC 2 cut(s) 381, 766
Sau96I GGNCC 1 cut(s) 859
ScaI AGTACT 1 cut(s) 824
SchI GAGTC 6 cut(s) 47, 246, 362, 428, 628, 825
ScrFI CCNGG 6 cut(s) 263, 264, 394, 445, 606, 667
SduI GDGCHC 2 cut(s) 20, 705
SfaNI GCATC 2 cut(s) 67, 694
SfoI GGCGCC 2 cut(s) 49, 193
Sfr303I CCGCGG 1 cut(s) 208
SgrAI CRCCGGYG 1 cut(s) 227
SgrBI CCGCGG 1 cut(s) 208
SmaI CCCGGG 1 cut(s) 264
SmlI CTYRAG 1 cut(s) 890
SmoI CTYRAG 1 cut(s) 890
Sse9I AATT 4 cut(s) 475, 498, 742, 920
SspDI GGCGCC 2 cut(s) 47, 191
StyD4I CCNGG 6 cut(s) 261, 262, 392, 443, 604, 665
TaiI ACGT 4 cut(s) 117, 284, 336, 698
TasI AATT 4 cut(s) 475, 498, 742, 920
TatI WGTACW 2 cut(s) 551, 822
TauI GCSGC 6 cut(s) 155, 168, 171, 210, 225, 278
TfiI GAWTC 3 cut(s) 574, 622, 806
Tru1I TTAA 1 cut(s) 483
Tru9I TTAA 1 cut(s) 483
TscAI CASTG 2 cut(s) 36, 869
TseI GCWGC 3 cut(s) 63, 524, 896
TspDTI ATGAA 1 cut(s) 632
TspMI CCCGGG 1 cut(s) 262
TspRI CASTG 2 cut(s) 36, 869
Van91I CCANNNNNTGG 1 cut(s) 444
XapI RAATTY 1 cut(s) 742
XceI RCATGY 1 cut(s) 355
XmaI CCCGGG 1 cut(s) 262
ZraI GACGTC 1 cut(s) 115
ZrmI AGTACT 1 cut(s) 824
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.