Rh3DG039700

DNA-damage-repair toleration protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr3D
OG0014381
Physical Location & Seq
Reverse (-)
2608560 .. 2609483
924 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh3DG039700.1

Sequence Viewer

Length: 924 bp
ATGGCGGAAACCACCACCACCACCACCGCACGGCCGCTCAAAATCATCGCCGGCGCCGACTCCTTCGGCTGTTCACTCAAAGACGCCTTGGTCTCCCACCTCCGCTCCCTCAACATCGACGTCGAGGACCTCGGCACCTCCTCCTACTACTCCATCGCCGCCGACGTCGGCCGCCGCGTCTCCTCCGCCGCCGACACCGAAACCCGCGGACTCGTCGCCTGCGGCACCGGCGTCGGCGTCGCGATCTTCGCCAACAAGTTCCCCGGAGTCTTCGCCGCCACGTGTCTCTCCCCCTCCGACGCCCTCAACGCCCGGTCCATCAACAACTCCAACGTCCTCGCCGTCTCCGGCATGTCCACGGCGCCGGAATCCGCGATCGAGATCCTCGACACGTGGCTCAACACTCCCTTCAAGGCGCCGTGTCCGGCGTCGGAGTCGAAACCTTGGCCGGAAGAGATATCTTCTTTTCTTGATAACTCAATGAATGACATGCCACAAATCGGAGCTGATTCTGATTTGAAGGAGAGCTCTTGCTCTATCTGCTGTTTGGTGAAGAATCGGAATTTGAATCCGATTGATATAATTCCGGGTGGATCAATGAAGATATTGAGGGAGAGTCCCACATCGGCCATAGTTAGGTTTAAGGCCGGGAGCGTGGAGCCGGCGCACCACCACACTTTCGGGCACGATTTGGTTGTGATGGAAGGGAAGAAGAGTGTGTGGAATTTAACTAAGAAGGAGAGATTTGATCTAGTTGTTGGGGATTACTTGTTTACTCCAGCTGGGGATGTGCATAGAGTCAAGTACTATGAAGACACCGAGTTCTTTATCAAGTGGGATGGGAAATGGGATATGTTCTTCGATGAAGATCTCGAGACTGCGAAGAAGGCTGTTGATCAAGCACTGGAGAATGAGGGTAAGTGA

Protein Analysis

307

Amino Acids

33.3

Weight (kDa)

5.0

Isoelectric Point (pI)

43.55

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
LacAB_rpiB PF02502 15 - 138 6.8e-30 Ribose/Galactose Isomerase
Cupin_7 PF12973 193 - 276 1.3e-06 ChrR Cupin-like domain
Cupin_2 PF07883 211 - 271 6.7e-06 Cupin domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0014381)

Species Orthologous Gene IDs
arabidopsis_thaliana AT3G04880
fragaria_vesca FvH4_6g03430
malus_domestica MD12G1237200.v1.1
prunus_persica Prupe.6G339900_v2.0.a1
pyrus_communis pycom12g21810
rosa_chinensis RchiOBHm_Chr3g0451931
rosa_laevigata RLG00000025637
rosa_multiflora Rmu_sc0002901.1_g000002 Rmu_ssc0000467.1_g000022
rosa_roxburghii Rroxscaffold_164G00436200 Rroxscaffold_6G00429100
rosa_rugosa Rorug02G0637500
rosa_samantha Rh3AG039200 Rh3BG040500 Rh3CG039000 Rh3DG039700
rosa_wichuraiana Rw3G002930

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AasI GACNNNNNNGTC 1 cut(s) 89
AatII GACGTC 2 cut(s) 123, 168
AccB1I GGYRCC 5 cut(s) 53, 134, 224, 361, 415
AccBSI CCGCTC 2 cut(s) 37, 105
AccII CGCG 4 cut(s) 177, 207, 242, 374
AclWI GGATC 2 cut(s) 376, 601
AcoI YGGCCR 4 cut(s) 32, 169, 446, 627
AcsI RAATTY 2 cut(s) 562, 724
AcvI CACGTG 2 cut(s) 282, 393
AfaI GTAC 1 cut(s) 806
AfiI CCNNNNNNNGG 3 cut(s) 30, 500, 636
AflIII ACRYGT 2 cut(s) 281, 390
AgsI TTSAA 3 cut(s) 412, 520, 568
AluBI AGCT 3 cut(s) 506, 528, 782
AluI AGCT 3 cut(s) 506, 528, 782
Alw21I GWGCWC 1 cut(s) 530
Alw26I GTCTC 5 cut(s) 97, 184, 290, 349, 869
AlwI GGATC 2 cut(s) 376, 601
Ama87I CYCGRG 1 cut(s) 872
AoxI GGCC 5 cut(s) 32, 169, 446, 627, 645
ApoI RAATTY 2 cut(s) 562, 724
AspLEI GCGC 4 cut(s) 56, 364, 418, 667
AspS9I GGNCC 2 cut(s) 127, 315
AsuC2I CCSGG 4 cut(s) 264, 313, 588, 649
AsuHPI GGTGA 1 cut(s) 562
AvaI CYCGRG 1 cut(s) 872
AvaII GGWCC 2 cut(s) 127, 315
BaeGI GKGCMC 1 cut(s) 687
BanI GGYRCC 5 cut(s) 53, 134, 224, 361, 415
BanII GRGCYC 1 cut(s) 530
BbrPI CACGTG 2 cut(s) 282, 393
BbsI GAAGAC 2 cut(s) 262, 819
Bbv12I GWGCWC 1 cut(s) 530
BccI CCATC 4 cut(s) 161, 326, 694, 833
BceAI ACGGC 4 cut(s) 47, 326, 375, 403
BcgI CGANNNNNNTGC 2 cut(s) 214, 248
BclI TGATCA 1 cut(s) 895
BcnI CCSGG 4 cut(s) 264, 313, 588, 649
BcoDI GTCTC 5 cut(s) 97, 184, 290, 349, 869
BfaI CTAG 1 cut(s) 752
BfoI RGCGCY 3 cut(s) 57, 365, 419
BglII AGATCT 1 cut(s) 868
BisI GCNGC 7 cut(s) 35, 159, 172, 175, 189, 223, 276
BlsI GCNGC 7 cut(s) 36, 160, 173, 176, 190, 224, 277
BmcAI AGTACT 1 cut(s) 806
Bme1390I CCNGG 4 cut(s) 264, 313, 588, 649
Bme18I GGWCC 2 cut(s) 127, 315
BmeT110I CYCGRG 1 cut(s) 872
BmgT120I GGNCC 2 cut(s) 127, 315
BmiI GGNNCC 6 cut(s) 55, 136, 226, 363, 417, 660
BmrFI CCNGG 4 cut(s) 264, 313, 588, 649
BpiI GAAGAC 2 cut(s) 262, 819
BpmI CTGGAG 1 cut(s) 762
BpuMI CCSGG 4 cut(s) 264, 313, 588, 649
BsaAI YACGTR 2 cut(s) 282, 393
BsaBI GATNNNNATC 2 cut(s) 380, 867
BsaI GGTCTC 1 cut(s) 97
BsaJI CCNNGG 6 cut(s) 87, 130, 205, 262, 357, 443
BsaXI ACNNNNNCTCC 2 cut(s) 89, 119
Bsc4I CCNNNNNNNGG 3 cut(s) 30, 500, 636
Bse118I RCCGGY 3 cut(s) 50, 227, 661
Bse1I ACTGG 1 cut(s) 909
Bse8I GATNNNNATC 2 cut(s) 380, 867
BseDI CCNNGG 6 cut(s) 87, 130, 205, 262, 357, 443
BseGI GGATG 2 cut(s) 793, 844
BseJI GATNNNNATC 2 cut(s) 380, 867
BseLI CCNNNNNNNGG 3 cut(s) 30, 500, 636
BseNI ACTGG 1 cut(s) 909
BseRI GAGGAG 2 cut(s) 130, 172
BseSI GKGCMC 1 cut(s) 687
BseX3I CGGCCG 2 cut(s) 32, 169
BseYI CCCAGC 1 cut(s) 782
Bsh1236I CGCG 4 cut(s) 177, 207, 242, 374
Bsh1285I CGRYCG 3 cut(s) 35, 172, 378
BshFI GGCC 5 cut(s) 34, 171, 448, 629, 647
BshNI GGYRCC 5 cut(s) 53, 134, 224, 361, 415
BsiEI CGRYCG 3 cut(s) 35, 172, 378
BsiHKAI GWGCWC 1 cut(s) 530
BsiHKCI CYCGRG 1 cut(s) 872
BslFI GGGAC 1 cut(s) 603
BslI CCNNNNNNNGG 3 cut(s) 30, 500, 636
BsmAI GTCTC 5 cut(s) 97, 184, 290, 349, 869
BsmBI CGTCTC 2 cut(s) 184, 349
BsmFI GGGAC 1 cut(s) 603
BsnI GGCC 5 cut(s) 34, 171, 448, 629, 647
Bso31I GGTCTC 1 cut(s) 97
BsoBI CYCGRG 1 cut(s) 872
Bsp1286I GDGCHC 2 cut(s) 530, 687
Bsp143I GATC 7 cut(s) 243, 375, 381, 593, 748, 868, 895
Bsp68I TCGCGA 1 cut(s) 242
BspANI GGCC 5 cut(s) 34, 171, 448, 629, 647
BspFNI CGCG 4 cut(s) 177, 207, 242, 374
BspLI GGNNCC 6 cut(s) 55, 136, 226, 363, 417, 660
BspPI GGATC 2 cut(s) 376, 601
BspT107I GGYRCC 5 cut(s) 53, 134, 224, 361, 415
BspTNI GGTCTC 1 cut(s) 97
BsrBI CCGCTC 2 cut(s) 37, 105
BsrFI RCCGGY 3 cut(s) 50, 227, 661
BsrI ACTGG 1 cut(s) 909
BssAI RCCGGY 3 cut(s) 50, 227, 661
BssECI CCNNGG 6 cut(s) 87, 130, 205, 262, 357, 443
BssMI GATC 7 cut(s) 243, 375, 381, 593, 748, 868, 895
BssT1I CCWWGG 2 cut(s) 87, 443
Bst6I CTCTTC 2 cut(s) 447, 707
BstBAI YACGTR 2 cut(s) 282, 393
BstC8I GCNNGC 3 cut(s) 52, 220, 663
BstDEI CTNAG 1 cut(s) 732
BstDSI CCRYGG 2 cut(s) 205, 357
BstF5I GGATG 2 cut(s) 793, 844
BstFNI CGCG 4 cut(s) 177, 207, 242, 374
BstH2I RGCGCY 3 cut(s) 57, 365, 419
BstHHI GCGC 4 cut(s) 56, 364, 418, 667
BstKTI GATC 7 cut(s) 246, 378, 384, 596, 751, 871, 898
BstMAI GTCTC 5 cut(s) 97, 184, 290, 349, 869
BstMBI GATC 7 cut(s) 243, 375, 381, 593, 748, 868, 895
BstMCI CGRYCG 3 cut(s) 35, 172, 378
BstMWI GCNNNNNNNGC 5 cut(s) 228, 248, 308, 540, 887
BstNSI RCATGY 2 cut(s) 355, 493
BstSCI CCNGG 4 cut(s) 262, 311, 586, 647
BstSLI GKGCMC 1 cut(s) 687
BstUI CGCG 4 cut(s) 177, 207, 242, 374
BstV2I GAAGAC 2 cut(s) 262, 819
BstX2I RGATCY 2 cut(s) 381, 868
BstYI RGATCY 2 cut(s) 381, 868
BstZI CGGCCG 2 cut(s) 32, 169
BsuRI GGCC 5 cut(s) 34, 171, 448, 629, 647
BtgI CCRYGG 2 cut(s) 205, 357
BtgZI GCGATG 2 cut(s) 31, 139
BtsCI GGATG 2 cut(s) 793, 844
BtsIMutI CAGTG 1 cut(s) 902
BtuMI TCGCGA 1 cut(s) 242
Cac8I GCNNGC 3 cut(s) 52, 220, 663
CfoI GCGC 4 cut(s) 56, 364, 418, 667
Cfr10I RCCGGY 3 cut(s) 50, 227, 661
Cfr13I GGNCC 2 cut(s) 127, 315
Cfr42I CCGCGG 1 cut(s) 208
CseI GACGC 6 cut(s) 92, 166, 220, 226, 308, 417
Csp6I GTAC 1 cut(s) 805
CviAII CATG 2 cut(s) 352, 490
CviQI GTAC 1 cut(s) 805
DdeI CTNAG 1 cut(s) 732
DinI GGCGCC 3 cut(s) 55, 363, 417
DpnI GATC 7 cut(s) 245, 377, 383, 595, 750, 870, 897
DpnII GATC 7 cut(s) 243, 375, 381, 593, 748, 868, 895
DrdI GACNNNNNNGTC 1 cut(s) 89
DseDI GACNNNNNNGTC 1 cut(s) 89
EaeI YGGCCR 4 cut(s) 32, 169, 446, 627
EagI CGGCCG 2 cut(s) 32, 169
Eam1104I CTCTTC 2 cut(s) 447, 707
EarI CTCTTC 2 cut(s) 447, 707
EciI GGCGGA 2 cut(s) 20, 175
Ecl136II GAGCTC 1 cut(s) 528
EclXI CGGCCG 2 cut(s) 32, 169
Eco130I CCWWGG 2 cut(s) 87, 443
Eco24I GRGCYC 1 cut(s) 530
Eco31I GGTCTC 1 cut(s) 97
Eco32I GATATC 1 cut(s) 459
Eco47I GGWCC 2 cut(s) 127, 315
Eco52I CGGCCG 2 cut(s) 32, 169
Eco53kI GAGCTC 1 cut(s) 528
Eco72I CACGTG 2 cut(s) 282, 393
Eco88I CYCGRG 1 cut(s) 872
EcoICRI GAGCTC 1 cut(s) 528
EcoO109I RGGNCCY 1 cut(s) 127
EcoRV GATATC 1 cut(s) 459
EcoT14I CCWWGG 2 cut(s) 87, 443
EcoT38I GRGCYC 1 cut(s) 530
EgeI GGCGCC 3 cut(s) 55, 363, 417
EheI GGCGCC 3 cut(s) 55, 363, 417
ErhI CCWWGG 2 cut(s) 87, 443
Esp3I CGTCTC 2 cut(s) 184, 349
FaeI CATG 2 cut(s) 355, 493
FaiI YATR 7 cut(s) 353, 491, 581, 632, 795, 810, 854
FaqI GGGAC 1 cut(s) 603
FatI CATG 2 cut(s) 351, 489
FauI CCCGC 1 cut(s) 212
FbaI TGATCA 1 cut(s) 895
Fnu4HI GCNGC 7 cut(s) 35, 159, 172, 175, 189, 223, 276
FokI GGATG 2 cut(s) 800, 851
FriOI GRGCYC 1 cut(s) 530
Fsp4HI GCNGC 7 cut(s) 35, 159, 172, 175, 189, 223, 276
FspBI CTAG 1 cut(s) 752
GlaI GCGC 4 cut(s) 55, 363, 417, 666
GluI GCNGC 7 cut(s) 35, 159, 172, 175, 189, 223, 276
GsaI CCCAGC 1 cut(s) 786
GsuI CTGGAG 1 cut(s) 762
HaeII RGCGCY 3 cut(s) 57, 365, 419
HaeIII GGCC 5 cut(s) 34, 171, 448, 629, 647
HgaI GACGC 6 cut(s) 92, 166, 220, 226, 308, 417
HhaI GCGC 4 cut(s) 56, 364, 418, 667
Hin1II CATG 2 cut(s) 355, 493
Hin6I GCGC 4 cut(s) 54, 362, 416, 665
HinP1I GCGC 4 cut(s) 54, 362, 416, 665
HphI GGTGA 1 cut(s) 562
Hpy166II GTNNAC 3 cut(s) 74, 357, 774
Hpy188I TCNGA 6 cut(s) 298, 433, 503, 514, 561, 573
Hpy188III TCNNGA 5 cut(s) 241, 379, 470, 872, 874
Hpy8I GTNNAC 3 cut(s) 74, 357, 774
Hpy99I CGWCG 9 cut(s) 122, 125, 167, 170, 218, 236, 242, 302, 433
HpyAV CCTTC 6 cut(s) 73, 418, 514, 698, 730, 880
HpyCH4IV ACGT 5 cut(s) 120, 165, 281, 333, 392
HpyCH4V TGCA 1 cut(s) 793
HpyF10VI GCNNNNNNNGC 5 cut(s) 228, 248, 308, 540, 887
HpyF3I CTNAG 1 cut(s) 732
HpySE526I ACGT 5 cut(s) 120, 165, 281, 333, 392
Hsp92II CATG 2 cut(s) 355, 493
HspAI GCGC 4 cut(s) 54, 362, 416, 665
KasI GGCGCC 3 cut(s) 53, 361, 415
KroI GCCGGC 2 cut(s) 50, 661
KroNI GCCGGC 2 cut(s) 52, 663
Ksp22I TGATCA 1 cut(s) 895
KspI CCGCGG 1 cut(s) 208
Kzo9I GATC 7 cut(s) 243, 375, 381, 593, 748, 868, 895
LmnI GCTCC 4 cut(s) 110, 503, 651, 658
MaeI CTAG 1 cut(s) 752
MaeII ACGT 5 cut(s) 120, 165, 281, 333, 392
MalI GATC 7 cut(s) 245, 377, 383, 595, 750, 870, 897
MbiI CCGCTC 2 cut(s) 37, 105
MboI GATC 7 cut(s) 243, 375, 381, 593, 748, 868, 895
MflI RGATCY 2 cut(s) 381, 868
MhlI GDGCHC 2 cut(s) 530, 687
MluCI AATT 3 cut(s) 562, 582, 724
Mly113I GGCGCC 3 cut(s) 54, 362, 416
MlyI GAGTC 6 cut(s) 53, 204, 276, 443, 625, 807
MmeI TCCRAC 3 cut(s) 321, 354, 411
MreI CGCCGGCG 1 cut(s) 50
MroNI GCCGGC 2 cut(s) 50, 661
MseI TTAA 2 cut(s) 642, 728
MspA1I CMGCKG 2 cut(s) 207, 782
MspR9I CCNGG 4 cut(s) 264, 313, 588, 649
MvnI CGCG 4 cut(s) 177, 207, 242, 374
MwoI GCNNNNNNNGC 5 cut(s) 228, 248, 308, 540, 887
NaeI GCCGGC 2 cut(s) 52, 663
NarI GGCGCC 3 cut(s) 54, 362, 416
NciI CCSGG 4 cut(s) 264, 313, 588, 649
NdeII GATC 7 cut(s) 243, 375, 381, 593, 748, 868, 895
NgoMIV GCCGGC 2 cut(s) 50, 661
NlaIII CATG 2 cut(s) 355, 493
NlaIV GGNNCC 6 cut(s) 55, 136, 226, 363, 417, 660
NmeAIII GCCGAG 1 cut(s) 111
NruI TCGCGA 1 cut(s) 242
NspI RCATGY 2 cut(s) 355, 493
PaeR7I CTCGAG 1 cut(s) 872
PcsI WCGNNNNNNNCGW 5 cut(s) 54, 162, 174, 339, 384
PdiI GCCGGC 2 cut(s) 52, 663
PfeI GAWTC 4 cut(s) 368, 509, 556, 568
PkrI GCNGC 7 cut(s) 36, 160, 173, 176, 190, 224, 277
Ple19I CGATCG 1 cut(s) 378
PleI GAGTC 6 cut(s) 53, 204, 275, 442, 624, 806
PluTI GGCGCC 3 cut(s) 57, 365, 419
PmaCI CACGTG 2 cut(s) 282, 393
PmlI CACGTG 2 cut(s) 282, 393
PpsI GAGTC 6 cut(s) 53, 204, 275, 442, 624, 806
Ppu21I YACGTR 2 cut(s) 282, 393
PpuMI RGGWCCY 1 cut(s) 127
Psp124BI GAGCTC 1 cut(s) 530
Psp5II RGGWCCY 1 cut(s) 127
PspCI CACGTG 2 cut(s) 282, 393
PspFI CCCAGC 1 cut(s) 782
PspN4I GGNNCC 6 cut(s) 55, 136, 226, 363, 417, 660
PspPI GGNCC 2 cut(s) 127, 315
PspPPI RGGWCCY 1 cut(s) 127
PsuI RGATCY 2 cut(s) 381, 868
PvuI CGATCG 1 cut(s) 378
PvuII CAGCTG 1 cut(s) 782
RruI TCGCGA 1 cut(s) 242
RsaI GTAC 1 cut(s) 806
RsaNI GTAC 1 cut(s) 805
SacI GAGCTC 1 cut(s) 530
SacII CCGCGG 1 cut(s) 208
SaqAI TTAA 2 cut(s) 642, 728
SatI GCNGC 7 cut(s) 35, 159, 172, 175, 189, 223, 276
Sau3AI GATC 7 cut(s) 243, 375, 381, 593, 748, 868, 895
Sau96I GGNCC 2 cut(s) 127, 315
ScaI AGTACT 1 cut(s) 806
SchI GAGTC 6 cut(s) 53, 204, 276, 443, 625, 807
ScrFI CCNGG 4 cut(s) 264, 313, 588, 649
SduI GDGCHC 2 cut(s) 530, 687
SfoI GGCGCC 3 cut(s) 55, 363, 417
Sfr274I CTCGAG 1 cut(s) 872
Sfr303I CCGCGG 1 cut(s) 208
SgrAI CRCCGGYG 2 cut(s) 50, 227
SgrBI CCGCGG 1 cut(s) 208
SinI GGWCC 2 cut(s) 127, 315
SlaI CTCGAG 1 cut(s) 872
SmlI CTYRAG 1 cut(s) 872
SmoI CTYRAG 1 cut(s) 872
Sse9I AATT 3 cut(s) 562, 582, 724
SspDI GGCGCC 3 cut(s) 53, 361, 415
SspMI CTAG 1 cut(s) 752
SstI GAGCTC 1 cut(s) 530
StyD4I CCNGG 4 cut(s) 262, 311, 586, 647
StyI CCWWGG 2 cut(s) 87, 443
TaiI ACGT 5 cut(s) 123, 168, 284, 336, 395
TaqI TCGA 7 cut(s) 117, 123, 378, 387, 437, 861, 873
TasI AATT 3 cut(s) 562, 582, 724
TatI WGTACW 1 cut(s) 804
TauI GCSGC 7 cut(s) 37, 161, 174, 177, 191, 225, 278
TfiI GAWTC 4 cut(s) 368, 509, 556, 568
Tru1I TTAA 2 cut(s) 642, 728
Tru9I TTAA 2 cut(s) 642, 728
TscAI CASTG 1 cut(s) 909
TspDTI ATGAA 4 cut(s) 497, 614, 825, 879
TspRI CASTG 1 cut(s) 909
VpaK11BI GGWCC 2 cut(s) 127, 315
XapI RAATTY 2 cut(s) 562, 724
XceI RCATGY 2 cut(s) 355, 493
XhoI CTCGAG 1 cut(s) 872
XspI CTAG 1 cut(s) 752
ZraI GACGTC 2 cut(s) 121, 166
ZrmI AGTACT 1 cut(s) 806
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.