Basic Information

Type: gene

Biological Identity

Species

rosa_rugosa

Chromosome

GWHBQTZ00000002

Orthogroup ID

OG0014381

Physical Location & Seq

Genomic Coordinates Forward (+)

75059664 .. 75060781

Gene Structure 1118 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rorug02G0637500.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 675 bp

ATGGTTGGAGCTGGTGTTCTCGGTCTCCCTTATGCCATGGCTGAGCTTGGATGTTTTGTTAATTATTCTATGGGTCCTGGTATAGCTATTTTGGTCCTTTCATGGGTCATCACATTATACACAGTACGGCAAATGGTTGAGATGCATGAGATGGTTCCAGGGAAACGTTTTGATCGTTACCACGAATTGGGTCAACATGCATTTGTCCTCGAAATCCAAGCAACAATTCCTTCTACACCTGAGAAGCCTTCCAAGGTACCCATGTGGAAAGGAGTCATTTTTGCCTACATAATTGTGGCTTTGTGCTACTTCCCAGTTTCTCTGGTGAGATATTACATATATGGAAATTCAGTTCAAGACAACATCCTCGTCTCATTGGAAAGACCCAAATGGCTAATTGCAATGGCCAACATGTTTGTTGTCATCCATGTTATTGGAAGCTATCAGATTTATGCAATGCCAATGTTTGACATGATGGAAACTGTACTGGTAAAGAAGTTGAATTTCAGGCCAACTTTTATGCTTCGCTTCGTTACACGAACTTTATATGTTGCAATTACCATGTTTGTCGGAATCACATTCCCTTTCTTCAGTGGTCTCCTTGGATTTTTCGGAGGATTTGCTTTTGCCCCAACAACATATTTTCTCCCTTGTATAATGTGGCTTGCCATCTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005737 GO:0005829 GO:0006950 GO:0008150 GO:0009266 GO:0009409 GO:0009628 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044424 GO:0044444 GO:0044464 GO:0050896

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Cupin_2 Cupin_7 LacAB_rpiB

Protein Analysis

224

Amino Acids

25.5

Weight (kDa)

8.94

Isoelectric Point (pI)

34.63

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Aa_trans	PF01490	1 - 68	1.3e-12	Transmembrane amino acid transporter protein
Aa_trans	PF01490	66 - 224	3.3e-38	Transmembrane amino acid transporter protein

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

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Publication-ready

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Orthologous Genes (Group: OG0014381)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G04880
fragaria_vesca	FvH4_6g03430
malus_domestica	MD12G1237200.v1.1
prunus_persica	Prupe.6G339900_v2.0.a1
pyrus_communis	pycom12g21810
rosa_chinensis	RchiOBHm_Chr3g0451931
rosa_laevigata	RLG00000025637
rosa_multiflora	Rmu_sc0002901.1_g000002 Rmu_ssc0000467.1_g000022
rosa_roxburghii	Rroxscaffold_164G00436200 Rroxscaffold_6G00429100
rosa_rugosa	Rorug02G0637500
rosa_samantha	Rh3AG039200 Rh3BG040500 Rh3CG039000 Rh3DG039700
rosa_wichuraiana	Rw3G002930

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc65I	GGTACC	1 cut(s)	256
AccB1I	GGYRCC	1 cut(s)	256
AccB7I	CCANNNNNTGG	1 cut(s)	187
AclI	AACGTT	1 cut(s)	166
AcoI	YGGCCR	1 cut(s)	405
AcsI	RAATTY	2 cut(s)	346, 502
AcuI	CTGAAG	1 cut(s)	574
AfaI	GTAC	3 cut(s)	126, 258, 486
AfiI	CCNNNNNNNGG	2 cut(s)	103, 187
AflIII	ACRYGT	1 cut(s)	411
AgsI	TTSAA	2 cut(s)	356, 502
AjnI	CCWGG	2 cut(s)	76, 157
AjuI	GAANNNNNNNTTGG	2 cut(s)	210, 242
AloI	GAACNNNNNNTCC	3 cut(s)	32, 336, 368
AluBI	AGCT	4 cut(s)	11, 46, 86, 441
AluI	AGCT	4 cut(s)	11, 46, 86, 441
Alw26I	GTCTC	3 cut(s)	29, 376, 602
AoxI	GGCC	2 cut(s)	405, 509
ApoI	RAATTY	2 cut(s)	346, 502
Asp718I	GGTACC	1 cut(s)	256
AspS9I	GGNCC	2 cut(s)	74, 94
AsuHPI	GGTGA	1 cut(s)	337
AvaII	GGWCC	2 cut(s)	74, 94
BaeI	ACNNNNGTAYC	2 cut(s)	248, 281
BalI	TGGCCA	1 cut(s)	407
BanI	GGYRCC	1 cut(s)	256
BccI	CCATC	2 cut(s)	145, 469
BceAI	ACGGC	1 cut(s)	143
BciT130I	CCWGG	2 cut(s)	78, 159
BcoDI	GTCTC	3 cut(s)	29, 376, 602
BlpI	GCTNAGC	1 cut(s)	42
Bme1390I	CCNGG	2 cut(s)	78, 159
Bme18I	GGWCC	2 cut(s)	74, 94
BmgT120I	GGNCC	2 cut(s)	74, 94
BmiI	GGNNCC	3 cut(s)	75, 156, 258
BmrFI	CCNGG	2 cut(s)	78, 159
BmrI	ACTGGG	1 cut(s)	308
BmsI	GCATC	1 cut(s)	132
BmuI	ACTGGG	1 cut(s)	308
Bpu1102I	GCTNAGC	1 cut(s)	42
BsaI	GGTCTC	2 cut(s)	29, 602
BsaJI	CCNNGG	4 cut(s)	36, 158, 252, 601
BsaXI	ACNNNNNCTCC	1 cut(s)	30
Bsc4I	CCNNNNNNNGG	2 cut(s)	103, 187
Bse1I	ACTGG	2 cut(s)	314, 492
Bse3DI	GCAATG	2 cut(s)	408, 462
BseBI	CCWGG	2 cut(s)	78, 159
BseDI	CCNNGG	4 cut(s)	36, 158, 252, 601
BseGI	GGATG	3 cut(s)	56, 363, 423
BseLI	CCNNNNNNNGG	2 cut(s)	103, 187
BseMI	GCAATG	2 cut(s)	408, 462
BseMII	CTCAG	2 cut(s)	33, 231
BseNI	ACTGG	2 cut(s)	314, 492
BshFI	GGCC	2 cut(s)	407, 511
BshNI	GGYRCC	1 cut(s)	256
BslI	CCNNNNNNNGG	2 cut(s)	103, 187
BsmAI	GTCTC	3 cut(s)	29, 376, 602
BsmBI	CGTCTC	1 cut(s)	376
BsnI	GGCC	2 cut(s)	407, 511
Bso31I	GGTCTC	2 cut(s)	29, 602
Bsp143I	GATC	1 cut(s)	172
Bsp1720I	GCTNAGC	1 cut(s)	42
Bsp19I	CCATGG	1 cut(s)	36
BspANI	GGCC	2 cut(s)	407, 511
BspCNI	CTCAG	2 cut(s)	34, 232
BspLI	GGNNCC	3 cut(s)	75, 156, 258
BspT107I	GGYRCC	1 cut(s)	256
BspTNI	GGTCTC	2 cut(s)	29, 602
BsrDI	GCAATG	2 cut(s)	408, 462
BsrI	ACTGG	2 cut(s)	314, 492
BssECI	CCNNGG	4 cut(s)	36, 158, 252, 601
BssMI	GATC	1 cut(s)	172
BssT1I	CCWWGG	3 cut(s)	36, 252, 601
Bst2UI	CCWGG	2 cut(s)	78, 159
Bst4CI	ACNGT	2 cut(s)	124, 484
BstC8I	GCNNGC	1 cut(s)	666
BstDEI	CTNAG	2 cut(s)	42, 240
BstDSI	CCRYGG	1 cut(s)	36
BstF5I	GGATG	3 cut(s)	56, 363, 423
BstKTI	GATC	1 cut(s)	175
BstMAI	GTCTC	3 cut(s)	29, 376, 602
BstMBI	GATC	1 cut(s)	172
BstNI	CCWGG	2 cut(s)	78, 159
BstNSI	RCATGY	2 cut(s)	200, 415
BstSCI	CCNGG	2 cut(s)	76, 157
BstXI	CCANNNNNNTGG	1 cut(s)	434
BsuRI	GGCC	2 cut(s)	407, 511
BtgI	CCRYGG	1 cut(s)	36
BtsCI	GGATG	3 cut(s)	56, 363, 423
BtsIMutI	CAGTG	1 cut(s)	598
Cac8I	GCNNGC	1 cut(s)	666
Cfr13I	GGNCC	2 cut(s)	74, 94
Csp6I	GTAC	3 cut(s)	125, 257, 485
CviAII	CATG	9 cut(s)	37, 102, 146, 197, 262, 412, 428, 472, 562
CviQI	GTAC	3 cut(s)	125, 257, 485
DdeI	CTNAG	2 cut(s)	42, 240
DpnI	GATC	1 cut(s)	174
DpnII	GATC	1 cut(s)	172
EaeI	YGGCCR	1 cut(s)	405
Eco130I	CCWWGG	3 cut(s)	36, 252, 601
Eco31I	GGTCTC	2 cut(s)	29, 602
Eco47I	GGWCC	2 cut(s)	74, 94
Eco57I	CTGAAG	1 cut(s)	574
EcoO109I	RGGNCCY	1 cut(s)	74
EcoRII	CCWGG	2 cut(s)	76, 157
EcoT14I	CCWWGG	3 cut(s)	36, 252, 601
EcoT22I	ATGCAT	2 cut(s)	147, 202
ErhI	CCWWGG	3 cut(s)	36, 252, 601
Esp3I	CGTCTC	1 cut(s)	376
FaeI	CATG	9 cut(s)	40, 105, 149, 200, 265, 415, 431, 475, 565
FatI	CATG	9 cut(s)	36, 101, 145, 196, 261, 411, 427, 471, 561
FokI	GGATG	3 cut(s)	63, 350, 410
HaeIII	GGCC	2 cut(s)	407, 511
Hin1II	CATG	9 cut(s)	40, 105, 149, 200, 265, 415, 431, 475, 565
HincII	GTYRAC	1 cut(s)	194
HindII	GTYRAC	1 cut(s)	194
HinfI	GANTC	2 cut(s)	273, 573
HphI	GGTGA	1 cut(s)	337
Hpy166II	GTNNAC	1 cut(s)	194
Hpy188I	TCNGA	3 cut(s)	447, 572, 614
Hpy188III	TCNNGA	1 cut(s)	356
Hpy8I	GTNNAC	1 cut(s)	194
HpyAV	CCTTC	2 cut(s)	240, 258
HpyCH4III	ACNGT	2 cut(s)	124, 484
HpyCH4IV	ACGT	1 cut(s)	166
HpyCH4V	TGCA	5 cut(s)	145, 200, 401, 455, 554
HpyF3I	CTNAG	2 cut(s)	42, 240
HpySE526I	ACGT	1 cut(s)	166
Hsp92II	CATG	9 cut(s)	40, 105, 149, 200, 265, 415, 431, 475, 565
KpnI	GGTACC	1 cut(s)	260
Kzo9I	GATC	1 cut(s)	172
LmnI	GCTCC	1 cut(s)	8
LpnPI	CCDG	9 cut(s)	63, 90, 144, 171, 252, 308, 327, 473, 493
LweI	GCATC	1 cut(s)	132
MaeII	ACGT	1 cut(s)	166
MaeIII	GTNAC	2 cut(s)	176, 532
MalI	GATC	1 cut(s)	174
MboI	GATC	1 cut(s)	172
MboII	GAAGA	1 cut(s)	580
MlsI	TGGCCA	1 cut(s)	407
MluCI	AATT	8 cut(s)	61, 185, 225, 291, 346, 396, 502, 555
MluNI	TGGCCA	1 cut(s)	407
MlyI	GAGTC	1 cut(s)	282
MmeI	TCCRAC	1 cut(s)	550
MnlI	CCTC	3 cut(s)	218, 377, 608
Mox20I	TGGCCA	1 cut(s)	407
Mph1103I	ATGCAT	2 cut(s)	147, 202
MscI	TGGCCA	1 cut(s)	407
MseI	TTAA	1 cut(s)	60
MslI	CAYNNNNRTG	1 cut(s)	293
Msp20I	TGGCCA	1 cut(s)	407
MspR9I	CCNGG	2 cut(s)	78, 159
MvaI	CCWGG	2 cut(s)	78, 159
NcoI	CCATGG	1 cut(s)	36
NdeII	GATC	1 cut(s)	172
NlaIII	CATG	9 cut(s)	40, 105, 149, 200, 265, 415, 431, 475, 565
NlaIV	GGNNCC	3 cut(s)	75, 156, 258
NsiI	ATGCAT	2 cut(s)	147, 202
NspI	RCATGY	2 cut(s)	200, 415
PciI	ACATGT	1 cut(s)	411
PcsI	WCGNNNNNNNCGW	1 cut(s)	172
PfeI	GAWTC	1 cut(s)	573
PflMI	CCANNNNNTGG	1 cut(s)	187
PleI	GAGTC	1 cut(s)	281
PpsI	GAGTC	1 cut(s)	281
PpuMI	RGGWCCY	1 cut(s)	74
PscI	ACATGT	1 cut(s)	411
Psp1406I	AACGTT	1 cut(s)	166
Psp5II	RGGWCCY	1 cut(s)	74
Psp6I	CCWGG	2 cut(s)	76, 157
PspGI	CCWGG	2 cut(s)	76, 157
PspN4I	GGNNCC	3 cut(s)	75, 156, 258
PspPI	GGNCC	2 cut(s)	74, 94
PspPPI	RGGWCCY	1 cut(s)	74
RsaI	GTAC	3 cut(s)	126, 258, 486
RsaNI	GTAC	3 cut(s)	125, 257, 485
RseI	CAYNNNNRTG	1 cut(s)	293
SaqAI	TTAA	1 cut(s)	60
Sau3AI	GATC	1 cut(s)	172
Sau96I	GGNCC	2 cut(s)	74, 94
SchI	GAGTC	1 cut(s)	282
ScrFI	CCNGG	2 cut(s)	78, 159
SetI	ASST	7 cut(s)	13, 48, 88, 169, 241, 258, 443
SfaNI	GCATC	1 cut(s)	132
SinI	GGWCC	2 cut(s)	74, 94
SmiMI	CAYNNNNRTG	1 cut(s)	293
Sse9I	AATT	8 cut(s)	61, 185, 225, 291, 346, 396, 502, 555
StyD4I	CCNGG	2 cut(s)	76, 157
StyI	CCWWGG	3 cut(s)	36, 252, 601
TaaI	ACNGT	2 cut(s)	124, 484
TaiI	ACGT	1 cut(s)	169
TaqI	TCGA	1 cut(s)	210
TaqII	GACCGA	1 cut(s)	11
TasI	AATT	8 cut(s)	61, 185, 225, 291, 346, 396, 502, 555
TatI	WGTACW	1 cut(s)	484
TfiI	GAWTC	1 cut(s)	573
Tru1I	TTAA	1 cut(s)	60
Tru9I	TTAA	1 cut(s)	60
TscAI	CASTG	1 cut(s)	598
TspDTI	ATGAA	1 cut(s)	90
TspRI	CASTG	1 cut(s)	598
Van91I	CCANNNNNTGG	1 cut(s)	187
VpaK11BI	GGWCC	2 cut(s)	74, 94
XapI	RAATTY	2 cut(s)	346, 502
XceI	RCATGY	2 cut(s)	200, 415
Zsp2I	ATGCAT	2 cut(s)	147, 202

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.