FvH4_6g03430

DNA-damage-repair toleration protein

Basic Information

Type: gene
Biological Identity
fragaria_vesca
Fvb6
Physical Location & Seq
Reverse (-)
1892615 .. 1894454
1840 bp
Loading structure...
UTR
Exon/CDS
Intron
FvH4_6g03430.t1

Sequence Viewer

Length: 1080 bp
ATGGCGGAAACCACCACCGCCGCACGGCCGCCGCTCAAAATCATCGCCGGCGCCGACTCCTTCGGCTGCACACTCAAAGACGCCTTGGTCTCCCACCTCCGATCCCTCAACATCGACGTCGAGGACCTCGGAACCTCCGCCTACTACTCCATCGCCGCCGAAGTCGGCCGCCGCGTCTCCTCCTCCTCCGCCGCCGCCGACACCGAAACCCGCGGACTCGTCGCCTGCGGCACCGGCGTCGGCGTCGCGATGTTCGCCAACAAGTTCCCCGGAGTCTTCGCCGCCACGTGTCTCTCCCCCGCCGACGCCCTCAACGCCCGCTCCATCAACAACTCCAACGTCCTCGCCGTCTCCGGCATGTCGACCCCGCCGGAATCCGCCGTCGAGATCCTCGACACCTGGCTCAACACTCCCTTCAAATCCCCATGCCCGGCGTCGGAGTCAAAACCCTGGCCGGAAGAGGTTTCATCGTTTCTCGACAAATCTATCAACGAAATGCCGAAAATCGGGGCGGATTCTGCTCCGCAAGACGCGTCTTGCTCAATCTGTTGTCTGCTGAAAAATCGGGATTTGAGAGAAATTGATATCATTCCGGGTGGGTCAATGAAGATAGTGAGGGAGAGTCCCACGTCGGCTGTAGTTAGGTTTAAGGCCGGGAGCGTGGAGCCGGCGCACCACCACACATTCGGGCACGATTTGGTGGTGATGGAGGGGAAGAAGAGTGTGTGGAATTTAACCAAGAGTGAGAGGTTTGATCTGGCTGTTGGGGACTACTTGTTTACTCCAGCCGGGGATGTGCATAGAGTCAAGTACTATGAAGATACCGAGTTCTTTATCAAGTGGGATGGGAAATGGGATATGTTTTTCGATGAGGATCTTGAGGCTGCGAAGAAGGCTATTGATCAGGAGTTGCAGAATGGAGATGTGCAGTTTTGGGTTAAATGCTTCATTCTGTTTCAATTGTGGCCTGCAATTTCAGTAGGTAAGTGGACAAGTACACATGTATGGAGAAGCATTTTTGTTATCGTGTTCAGTTTTAGTTCATTTCCGATTGCTGGACTCTGCTGTGATCAATCCTAA

Protein Analysis

360

Amino Acids

39.14

Weight (kDa)

5.17

Isoelectric Point (pI)

45.3

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
LacAB_rpiB PF02502 14 - 140 1.9e-28 Ribose/Galactose Isomerase
Cupin_7 PF12973 199 - 278 4.5e-06 ChrR Cupin-like domain
Cupin_2 PF07883 213 - 273 2.7e-06 Cupin domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready

Orthologous Genes (Group: OG0014381)

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AasI GACNNNNNNGTC 1 cut(s) 86
AatII GACGTC 1 cut(s) 120
AccB1I GGYRCC 2 cut(s) 50, 230
AccBSI CCGCTC 2 cut(s) 34, 321
AccI GTMKAC 1 cut(s) 362
AccII CGCG 4 cut(s) 174, 213, 248, 533
AclWI GGATC 3 cut(s) 96, 382, 882
AcoI YGGCCR 3 cut(s) 26, 166, 452
AcsI RAATTY 1 cut(s) 730
AcvI CACGTG 1 cut(s) 288
AcyI GRCGYC 7 cut(s) 51, 81, 117, 237, 243, 306, 434
AfaI GTAC 2 cut(s) 812, 997
AfiI CCNNNNNNNGG 5 cut(s) 24, 430, 436, 506, 1055
AflIII ACRYGT 3 cut(s) 287, 531, 1000
AgsI TTSAA 2 cut(s) 418, 959
AjiI CACGTC 1 cut(s) 630
AjnI CCWGG 2 cut(s) 398, 449
Alw26I GTCTC 4 cut(s) 94, 181, 296, 355
AlwI GGATC 3 cut(s) 96, 382, 882
AoxI GGCC 5 cut(s) 26, 166, 452, 651, 965
ApeKI GCWGC 2 cut(s) 66, 884
ApoI RAATTY 1 cut(s) 730
AspLEI GCGC 2 cut(s) 53, 673
AspS9I GGNCC 1 cut(s) 124
AsuC2I CCSGG 5 cut(s) 270, 431, 594, 655, 790
AsuHPI GGTGA 1 cut(s) 715
AvaII GGWCC 1 cut(s) 124
BaeGI GKGCMC 1 cut(s) 693
BanI GGYRCC 2 cut(s) 50, 230
BbrPI CACGTG 1 cut(s) 288
BbsI GAAGAC 1 cut(s) 268
BbvI GCAGC 2 cut(s) 53, 871
BccI CCATC 4 cut(s) 158, 332, 700, 839
BceAI ACGGC 3 cut(s) 41, 332, 365
BcgI CGANNNNNNTGC 2 cut(s) 220, 254
BciT130I CCWGG 2 cut(s) 400, 451
BclI TGATCA 2 cut(s) 901, 1069
BcnI CCSGG 5 cut(s) 270, 431, 594, 655, 790
BcoDI GTCTC 4 cut(s) 94, 181, 296, 355
BfmI CTRYAG 1 cut(s) 636
BfoI RGCGCY 1 cut(s) 54
BmcAI AGTACT 1 cut(s) 812
Bme1390I CCNGG 7 cut(s) 270, 400, 431, 451, 594, 655, 790
Bme18I GGWCC 1 cut(s) 124
BmgBI CACGTC 1 cut(s) 630
BmgT120I GGNCC 1 cut(s) 124
BmiI GGNNCC 4 cut(s) 52, 133, 232, 666
BmrFI CCNGG 7 cut(s) 270, 400, 431, 451, 594, 655, 790
BpiI GAAGAC 1 cut(s) 268
BpmI CTGGAG 1 cut(s) 768
BpuEI CTTGAG 1 cut(s) 899
BpuMI CCSGG 5 cut(s) 270, 431, 594, 655, 790
BsaAI YACGTR 1 cut(s) 288
BsaBI GATNNNNATC 1 cut(s) 873
BsaHI GRCGYC 7 cut(s) 51, 81, 117, 237, 243, 306, 434
BsaI GGTCTC 1 cut(s) 94
BsaJI CCNNGG 6 cut(s) 84, 127, 211, 268, 449, 789
BsaXI ACNNNNNCTCC 2 cut(s) 305, 335
Bsc4I CCNNNNNNNGG 5 cut(s) 24, 430, 436, 506, 1055
Bse118I RCCGGY 3 cut(s) 47, 233, 667
Bse8I GATNNNNATC 1 cut(s) 873
BseBI CCWGG 2 cut(s) 400, 451
BseDI CCNNGG 6 cut(s) 84, 127, 211, 268, 449, 789
BseGI GGATG 2 cut(s) 799, 850
BseJI GATNNNNATC 1 cut(s) 873
BseLI CCNNNNNNNGG 5 cut(s) 24, 430, 436, 506, 1055
BseRI GAGGAG 3 cut(s) 169, 172, 175
BseSI GKGCMC 1 cut(s) 693
BseX3I CGGCCG 2 cut(s) 26, 166
BseXI GCAGC 2 cut(s) 53, 871
BsgI GTGCAG 2 cut(s) 52, 947
Bsh1236I CGCG 4 cut(s) 174, 213, 248, 533
Bsh1285I CGRYCG 2 cut(s) 29, 169
BshFI GGCC 5 cut(s) 28, 168, 454, 653, 967
BshNI GGYRCC 2 cut(s) 50, 230
BsiEI CGRYCG 2 cut(s) 29, 169
BslFI GGGAC 2 cut(s) 609, 782
BslI CCNNNNNNNGG 5 cut(s) 24, 430, 436, 506, 1055
BsmAI GTCTC 4 cut(s) 94, 181, 296, 355
BsmBI CGTCTC 2 cut(s) 181, 355
BsmFI GGGAC 2 cut(s) 609, 782
BsnI GGCC 5 cut(s) 28, 168, 454, 653, 967
Bso31I GGTCTC 1 cut(s) 94
Bsp1286I GDGCHC 1 cut(s) 693
Bsp143I GATC 6 cut(s) 101, 387, 754, 874, 901, 1069
Bsp68I TCGCGA 1 cut(s) 248
BspANI GGCC 5 cut(s) 28, 168, 454, 653, 967
BspFNI CGCG 4 cut(s) 174, 213, 248, 533
BspLI GGNNCC 4 cut(s) 52, 133, 232, 666
BspPI GGATC 3 cut(s) 96, 382, 882
BspT107I GGYRCC 2 cut(s) 50, 230
BspTNI GGTCTC 1 cut(s) 94
BsrBI CCGCTC 2 cut(s) 34, 321
BsrFI RCCGGY 3 cut(s) 47, 233, 667
BssAI RCCGGY 3 cut(s) 47, 233, 667
BssECI CCNNGG 6 cut(s) 84, 127, 211, 268, 449, 789
BssMI GATC 6 cut(s) 101, 387, 754, 874, 901, 1069
BssNI GRCGYC 7 cut(s) 51, 81, 117, 237, 243, 306, 434
BssT1I CCWWGG 1 cut(s) 84
Bst2UI CCWGG 2 cut(s) 400, 451
Bst6I CTCTTC 2 cut(s) 453, 713
BstACI GRCGYC 7 cut(s) 51, 81, 117, 237, 243, 306, 434
BstBAI YACGTR 1 cut(s) 288
BstC8I GCNNGC 5 cut(s) 49, 226, 319, 669, 969
BstDSI CCRYGG 1 cut(s) 211
BstF5I GGATG 2 cut(s) 799, 850
BstFNI CGCG 4 cut(s) 174, 213, 248, 533
BstH2I RGCGCY 1 cut(s) 54
BstHHI GCGC 2 cut(s) 53, 673
BstKTI GATC 6 cut(s) 104, 390, 757, 877, 904, 1072
BstMAI GTCTC 4 cut(s) 94, 181, 296, 355
BstMBI GATC 6 cut(s) 101, 387, 754, 874, 901, 1069
BstMCI CGRYCG 2 cut(s) 29, 169
BstMWI GCNNNNNNNGC 5 cut(s) 234, 254, 314, 518, 893
BstNI CCWGG 2 cut(s) 400, 451
BstNSI RCATGY 2 cut(s) 361, 1004
BstSCI CCNGG 7 cut(s) 268, 398, 429, 449, 592, 653, 788
BstSFI CTRYAG 1 cut(s) 636
BstSLI GKGCMC 1 cut(s) 693
BstUI CGCG 4 cut(s) 174, 213, 248, 533
BstV1I GCAGC 2 cut(s) 53, 871
BstV2I GAAGAC 1 cut(s) 268
BstX2I RGATCY 2 cut(s) 387, 874
BstYI RGATCY 2 cut(s) 387, 874
BstZI CGGCCG 2 cut(s) 26, 166
BsuRI GGCC 5 cut(s) 28, 168, 454, 653, 967
BtgI CCRYGG 1 cut(s) 211
BtgZI GCGATG 3 cut(s) 28, 136, 263
BtrI CACGTC 1 cut(s) 630
BtsCI GGATG 2 cut(s) 799, 850
BtuMI TCGCGA 1 cut(s) 248
Cac8I GCNNGC 5 cut(s) 49, 226, 319, 669, 969
CfoI GCGC 2 cut(s) 53, 673
Cfr10I RCCGGY 3 cut(s) 47, 233, 667
Cfr13I GGNCC 1 cut(s) 124
Cfr42I CCGCGG 1 cut(s) 214
CseI GACGC 8 cut(s) 89, 163, 226, 232, 314, 423, 522, 539
Csp6I GTAC 2 cut(s) 811, 996
CviAII CATG 3 cut(s) 358, 426, 1001
CviQI GTAC 2 cut(s) 811, 996
DinI GGCGCC 1 cut(s) 52
DpnI GATC 6 cut(s) 103, 389, 756, 876, 903, 1071
DpnII GATC 6 cut(s) 101, 387, 754, 874, 901, 1069
DrdI GACNNNNNNGTC 1 cut(s) 86
DseDI GACNNNNNNGTC 1 cut(s) 86
EaeI YGGCCR 3 cut(s) 26, 166, 452
EagI CGGCCG 2 cut(s) 26, 166
Eam1104I CTCTTC 2 cut(s) 453, 713
EarI CTCTTC 2 cut(s) 453, 713
EciI GGCGGA 5 cut(s) 20, 127, 178, 367, 527
EclXI CGGCCG 2 cut(s) 26, 166
Eco130I CCWWGG 1 cut(s) 84
Eco31I GGTCTC 1 cut(s) 94
Eco32I GATATC 1 cut(s) 586
Eco47I GGWCC 1 cut(s) 124
Eco52I CGGCCG 2 cut(s) 26, 166
Eco72I CACGTG 1 cut(s) 288
EcoO109I RGGNCCY 1 cut(s) 124
EcoRII CCWGG 2 cut(s) 398, 449
EcoRV GATATC 1 cut(s) 586
EcoT14I CCWWGG 1 cut(s) 84
EgeI GGCGCC 1 cut(s) 52
EheI GGCGCC 1 cut(s) 52
ErhI CCWWGG 1 cut(s) 84
Esp3I CGTCTC 2 cut(s) 181, 355
FaeI CATG 3 cut(s) 361, 429, 1004
FaiI YATR 7 cut(s) 359, 427, 801, 816, 860, 1002, 1006
FaqI GGGAC 2 cut(s) 609, 782
FatI CATG 3 cut(s) 357, 425, 1000
FauI CCCGC 4 cut(s) 218, 307, 326, 375
FbaI TGATCA 2 cut(s) 901, 1069
FblI GTMKAC 1 cut(s) 362
FokI GGATG 2 cut(s) 806, 857
GlaI GCGC 2 cut(s) 52, 672
GsuI CTGGAG 1 cut(s) 768
HaeII RGCGCY 1 cut(s) 54
HaeIII GGCC 5 cut(s) 28, 168, 454, 653, 967
HgaI GACGC 8 cut(s) 89, 163, 226, 232, 314, 423, 522, 539
HhaI GCGC 2 cut(s) 53, 673
Hin1I GRCGYC 7 cut(s) 51, 81, 117, 237, 243, 306, 434
Hin1II CATG 3 cut(s) 361, 429, 1004
Hin6I GCGC 2 cut(s) 51, 671
HinP1I GCGC 2 cut(s) 51, 671
HincII GTYRAC 1 cut(s) 363
HindII GTYRAC 1 cut(s) 363
HinfI GANTC 9 cut(s) 56, 216, 273, 374, 440, 515, 622, 804, 1059
HphI GGTGA 1 cut(s) 715
Hpy166II GTNNAC 4 cut(s) 363, 780, 990, 998
Hpy188I TCNGA 4 cut(s) 101, 131, 439, 1050
Hpy188III TCNNGA 6 cut(s) 247, 385, 476, 566, 878, 905
Hpy8I GTNNAC 4 cut(s) 363, 780, 990, 998
Hpy99I CGWCG 9 cut(s) 119, 122, 224, 242, 248, 308, 386, 439, 634
HpyAV CCTTC 3 cut(s) 70, 424, 886
HpyCH4IV ACGT 4 cut(s) 117, 287, 339, 629
HpyCH4V TGCA 5 cut(s) 69, 799, 913, 928, 971
HpyF10VI GCNNNNNNNGC 5 cut(s) 234, 254, 314, 518, 893
HpySE526I ACGT 4 cut(s) 117, 287, 339, 629
Hsp92I GRCGYC 7 cut(s) 51, 81, 117, 237, 243, 306, 434
Hsp92II CATG 3 cut(s) 361, 429, 1004
HspAI GCGC 2 cut(s) 51, 671
KasI GGCGCC 1 cut(s) 50
KroI GCCGGC 2 cut(s) 47, 667
KroNI GCCGGC 2 cut(s) 49, 669
Ksp22I TGATCA 2 cut(s) 901, 1069
KspI CCGCGG 1 cut(s) 214
Kzo9I GATC 6 cut(s) 101, 387, 754, 874, 901, 1069
LmnI GCTCC 4 cut(s) 326, 526, 657, 664
Lsp1109I GCAGC 2 cut(s) 53, 871
MaeII ACGT 4 cut(s) 117, 287, 339, 629
MalI GATC 6 cut(s) 103, 389, 756, 876, 903, 1071
MbiI CCGCTC 2 cut(s) 34, 321
MboI GATC 6 cut(s) 101, 387, 754, 874, 901, 1069
MboII GAAGA 7 cut(s) 268, 470, 619, 727, 730, 830, 901
MfeI CAATTG 1 cut(s) 959
MflI RGATCY 2 cut(s) 387, 874
MhlI GDGCHC 1 cut(s) 693
MluCI AATT 4 cut(s) 579, 730, 959, 972
MluI ACGCGT 1 cut(s) 531
Mly113I GGCGCC 1 cut(s) 51
MlyI GAGTC 7 cut(s) 50, 210, 282, 449, 631, 813, 1053
MmeI TCCRAC 2 cut(s) 360, 417
MreI CGCCGGCG 1 cut(s) 47
MroNI GCCGGC 2 cut(s) 47, 667
MseI TTAA 3 cut(s) 648, 734, 939
MslI CAYNNNNRTG 1 cut(s) 1003
MspA1I CMGCKG 1 cut(s) 213
MspR9I CCNGG 7 cut(s) 270, 400, 431, 451, 594, 655, 790
MunI CAATTG 1 cut(s) 959
MvaI CCWGG 2 cut(s) 400, 451
MvnI CGCG 4 cut(s) 174, 213, 248, 533
MwoI GCNNNNNNNGC 5 cut(s) 234, 254, 314, 518, 893
NaeI GCCGGC 2 cut(s) 49, 669
NarI GGCGCC 1 cut(s) 51
NciI CCSGG 5 cut(s) 270, 431, 594, 655, 790
NdeII GATC 6 cut(s) 101, 387, 754, 874, 901, 1069
NgoMIV GCCGGC 2 cut(s) 47, 667
NlaIII CATG 3 cut(s) 361, 429, 1004
NlaIV GGNNCC 4 cut(s) 52, 133, 232, 666
NruI TCGCGA 1 cut(s) 248
NspI RCATGY 2 cut(s) 361, 1004
PciI ACATGT 1 cut(s) 1000
PcsI WCGNNNNNNNCGW 4 cut(s) 51, 171, 345, 390
PdiI GCCGGC 2 cut(s) 49, 669
PfeI GAWTC 2 cut(s) 374, 515
PleI GAGTC 7 cut(s) 50, 210, 281, 448, 630, 812, 1053
PluTI GGCGCC 1 cut(s) 54
PmaCI CACGTG 1 cut(s) 288
PmlI CACGTG 1 cut(s) 288
PpsI GAGTC 7 cut(s) 50, 210, 281, 448, 630, 812, 1053
Ppu21I YACGTR 1 cut(s) 288
PpuMI RGGWCCY 1 cut(s) 124
PscI ACATGT 1 cut(s) 1000
Psp5II RGGWCCY 1 cut(s) 124
Psp6I CCWGG 2 cut(s) 398, 449
PspCI CACGTG 1 cut(s) 288
PspGI CCWGG 2 cut(s) 398, 449
PspN4I GGNNCC 4 cut(s) 52, 133, 232, 666
PspPI GGNCC 1 cut(s) 124
PspPPI RGGWCCY 1 cut(s) 124
PsuI RGATCY 2 cut(s) 387, 874
RruI TCGCGA 1 cut(s) 248
RsaI GTAC 2 cut(s) 812, 997
RsaNI GTAC 2 cut(s) 811, 996
RseI CAYNNNNRTG 1 cut(s) 1003
SacII CCGCGG 1 cut(s) 214
SalI GTCGAC 1 cut(s) 361
SaqAI TTAA 3 cut(s) 648, 734, 939
Sau3AI GATC 6 cut(s) 101, 387, 754, 874, 901, 1069
Sau96I GGNCC 1 cut(s) 124
ScaI AGTACT 1 cut(s) 812
SchI GAGTC 7 cut(s) 50, 210, 282, 449, 631, 813, 1053
ScrFI CCNGG 7 cut(s) 270, 400, 431, 451, 594, 655, 790
SduI GDGCHC 1 cut(s) 693
SfcI CTRYAG 1 cut(s) 636
SfoI GGCGCC 1 cut(s) 52
Sfr303I CCGCGG 1 cut(s) 214
SgrAI CRCCGGYG 2 cut(s) 47, 233
SgrBI CCGCGG 1 cut(s) 214
SinI GGWCC 1 cut(s) 124
SmiMI CAYNNNNRTG 1 cut(s) 1003
SmlI CTYRAG 1 cut(s) 878
SmoI CTYRAG 1 cut(s) 878
Sse9I AATT 4 cut(s) 579, 730, 959, 972
SspDI GGCGCC 1 cut(s) 50
StyD4I CCNGG 7 cut(s) 268, 398, 429, 449, 592, 653, 788
StyI CCWWGG 1 cut(s) 84
TaiI ACGT 4 cut(s) 120, 290, 342, 632
TaqI TCGA 7 cut(s) 114, 120, 362, 384, 393, 477, 867
TasI AATT 4 cut(s) 579, 730, 959, 972
TatI WGTACW 2 cut(s) 810, 995
TfiI GAWTC 2 cut(s) 374, 515
Tru1I TTAA 3 cut(s) 648, 734, 939
Tru9I TTAA 3 cut(s) 648, 734, 939
TseI GCWGC 2 cut(s) 66, 884
TspDTI ATGAA 5 cut(s) 456, 620, 831, 937, 1032
VpaK11BI GGWCC 1 cut(s) 124
XapI RAATTY 1 cut(s) 730
XceI RCATGY 2 cut(s) 361, 1004
XmiI GTMKAC 1 cut(s) 362
ZraI GACGTC 1 cut(s) 118
ZrmI AGTACT 1 cut(s) 812
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.