RLG00000025637

DNA-damage-repair toleration protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_laevigata
Chr5
OG0014381
Physical Location & Seq
Forward (+)
47234214 .. 47235152
939 bp
Loading structure...
UTR
Exon/CDS
Intron
RLM00000025637

Sequence Viewer

Length: 939 bp
ATGGCGGAAAACACCACCACCACCACCACCGCACGGCCGCTCAAAATCATCGCCGGCGCCGACTCCTTCGGCTGTTCACTCAAAGACGCCCTGGTCTCCCACCTCCGCTCCCTCAACATCGACGTCGAGGACCTCGGCACCTCCTCCTACTACTCCATCGCCGCCGACGTCGGCCGCCGCGTCTCCTCCTCCTCCGCCGCCGACGTCGAAACCCGCGGACTCGTCGCCTGCGGCACCGGCGTCGGCGTCGCGATCTTCGCCAACAAGTTCCCCGGAGTCTTCGCCGCCACGTGTCTCTCCCCCTCCGACGCCCTCAACGCCCGGTCCATCAACAACTCCAACGTCCTCGCCGTCTCCGGCATGTCCACGGCGCCGGAATCCGCGATCGAGATCCTCGACACGTGGCTCAACACTCCCTTCAAGGCGCCGTGTCCGGCGTCGGAGTCGAAACCTTGGCCGGAAGAGATATCTTCTTTTCTTGATAACTCAATGAATGACATGCCACAAATTGGAGCCGATTCTGATTCTGATTTGAAGGAGAGTTCTTGCTCTATCTGTTGTTTGGTGAAGAATCGGAATCTGAATCCGATTGATATAATTCCGGGTGGATCAATGAAGATATTGAGGGAGAGTCCCACATCGGCCATAGTTAGGTTTAAGGCCGGGAGCGTGGAGCCGGCTCATCACCACACTTTTGGCCACGATTTGGTTGTGATGGAGGGGAAGAAGAGTGTGTGGAATTTAACTAAGAAGGAGAGATTTGATCTAGTTGTTGGGGATTACTTGTTTACACCAGCTGGGGATGTGCATAGAGTCAAGTACTATGAAGATACCGAGTTCTTTATCAAGTGGGATGGGAAATGGGATATGTTCTTCGATGAAGATCTCGAGACTGCGAAGAAGGCTGTTGATCAAGCACTGGAGAATGAGGGTAAGTGA

Protein Analysis

313

Amino Acids

33.79

Weight (kDa)

4.93

Isoelectric Point (pI)

44.46

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
LacAB_rpiB PF02502 16 - 141 1.7e-29 Ribose/Galactose Isomerase
Cupin_7 PF12973 198 - 281 1.4e-06 ChrR Cupin-like domain
Cupin_2 PF07883 216 - 276 6.8e-06 Cupin domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0014381)

Species Orthologous Gene IDs
arabidopsis_thaliana AT3G04880
fragaria_vesca FvH4_6g03430
malus_domestica MD12G1237200.v1.1
prunus_persica Prupe.6G339900_v2.0.a1
pyrus_communis pycom12g21810
rosa_chinensis RchiOBHm_Chr3g0451931
rosa_laevigata RLG00000025637
rosa_multiflora Rmu_sc0002901.1_g000002 Rmu_ssc0000467.1_g000022
rosa_roxburghii Rroxscaffold_164G00436200 Rroxscaffold_6G00429100
rosa_rugosa Rorug02G0637500
rosa_samantha Rh3AG039200 Rh3BG040500 Rh3CG039000 Rh3DG039700
rosa_wichuraiana Rw3G002930

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AasI GACNNNNNNGTC 1 cut(s) 92
AatII GACGTC 3 cut(s) 126, 171, 207
AccB1I GGYRCC 5 cut(s) 56, 137, 233, 370, 424
AccB7I CCANNNNNTGG 2 cut(s) 509, 706
AccBSI CCGCTC 2 cut(s) 40, 108
AccII CGCG 4 cut(s) 180, 216, 251, 383
AclWI GGATC 2 cut(s) 385, 616
AcoI YGGCCR 5 cut(s) 35, 172, 455, 642, 697
AcsI RAATTY 1 cut(s) 739
AcvI CACGTG 2 cut(s) 291, 402
AfaI GTAC 1 cut(s) 821
AfiI CCNNNNNNNGG 4 cut(s) 33, 509, 651, 706
AflIII ACRYGT 2 cut(s) 290, 399
AgsI TTSAA 2 cut(s) 421, 535
AjnI CCWGG 1 cut(s) 90
AluBI AGCT 1 cut(s) 797
AluI AGCT 1 cut(s) 797
Alw26I GTCTC 5 cut(s) 100, 187, 299, 358, 884
AlwI GGATC 2 cut(s) 385, 616
Ama87I CYCGRG 1 cut(s) 887
AoxI GGCC 6 cut(s) 35, 172, 455, 642, 660, 697
ApoI RAATTY 1 cut(s) 739
AspLEI GCGC 3 cut(s) 59, 373, 427
AspS9I GGNCC 2 cut(s) 130, 324
AsuC2I CCSGG 4 cut(s) 273, 322, 603, 664
AsuHPI GGTGA 2 cut(s) 577, 677
AvaI CYCGRG 1 cut(s) 887
AvaII GGWCC 2 cut(s) 130, 324
BalI TGGCCA 1 cut(s) 699
BanI GGYRCC 5 cut(s) 56, 137, 233, 370, 424
BbrPI CACGTG 2 cut(s) 291, 402
BbsI GAAGAC 1 cut(s) 271
BccI CCATC 4 cut(s) 164, 335, 709, 848
BceAI ACGGC 4 cut(s) 50, 335, 384, 412
BcgI CGANNNNNNTGC 2 cut(s) 223, 257
BciT130I CCWGG 1 cut(s) 92
BclI TGATCA 1 cut(s) 910
BcnI CCSGG 4 cut(s) 273, 322, 603, 664
BcoDI GTCTC 5 cut(s) 100, 187, 299, 358, 884
BfaI CTAG 1 cut(s) 767
BfoI RGCGCY 3 cut(s) 60, 374, 428
BglII AGATCT 1 cut(s) 883
BisI GCNGC 7 cut(s) 38, 162, 175, 178, 198, 232, 285
BlsI GCNGC 7 cut(s) 39, 163, 176, 179, 199, 233, 286
BmcAI AGTACT 1 cut(s) 821
Bme1390I CCNGG 5 cut(s) 92, 273, 322, 603, 664
Bme18I GGWCC 2 cut(s) 130, 324
BmeT110I CYCGRG 1 cut(s) 887
BmgT120I GGNCC 2 cut(s) 130, 324
BmiI GGNNCC 7 cut(s) 58, 139, 235, 372, 426, 514, 675
BmrFI CCNGG 5 cut(s) 92, 273, 322, 603, 664
BpiI GAAGAC 1 cut(s) 271
BpuMI CCSGG 4 cut(s) 273, 322, 603, 664
BsaAI YACGTR 2 cut(s) 291, 402
BsaBI GATNNNNATC 2 cut(s) 389, 882
BsaI GGTCTC 1 cut(s) 100
BsaJI CCNNGG 6 cut(s) 90, 133, 214, 271, 366, 452
BsaXI ACNNNNNCTCC 2 cut(s) 92, 122
Bsc4I CCNNNNNNNGG 4 cut(s) 33, 509, 651, 706
Bse118I RCCGGY 3 cut(s) 53, 236, 676
Bse1I ACTGG 1 cut(s) 924
Bse8I GATNNNNATC 2 cut(s) 389, 882
BseBI CCWGG 1 cut(s) 92
BseDI CCNNGG 6 cut(s) 90, 133, 214, 271, 366, 452
BseGI GGATG 2 cut(s) 808, 859
BseJI GATNNNNATC 2 cut(s) 389, 882
BseLI CCNNNNNNNGG 4 cut(s) 33, 509, 651, 706
BseNI ACTGG 1 cut(s) 924
BseRI GAGGAG 4 cut(s) 133, 175, 178, 181
BseX3I CGGCCG 2 cut(s) 35, 172
BseYI CCCAGC 1 cut(s) 797
Bsh1236I CGCG 4 cut(s) 180, 216, 251, 383
Bsh1285I CGRYCG 3 cut(s) 38, 175, 387
BshFI GGCC 6 cut(s) 37, 174, 457, 644, 662, 699
BshNI GGYRCC 5 cut(s) 56, 137, 233, 370, 424
BsiEI CGRYCG 3 cut(s) 38, 175, 387
BsiHKCI CYCGRG 1 cut(s) 887
BslFI GGGAC 1 cut(s) 618
BslI CCNNNNNNNGG 4 cut(s) 33, 509, 651, 706
BsmAI GTCTC 5 cut(s) 100, 187, 299, 358, 884
BsmBI CGTCTC 2 cut(s) 187, 358
BsmFI GGGAC 1 cut(s) 618
BsnI GGCC 6 cut(s) 37, 174, 457, 644, 662, 699
Bso31I GGTCTC 1 cut(s) 100
BsoBI CYCGRG 1 cut(s) 887
Bsp143I GATC 7 cut(s) 252, 384, 390, 608, 763, 883, 910
Bsp68I TCGCGA 1 cut(s) 251
BspANI GGCC 6 cut(s) 37, 174, 457, 644, 662, 699
BspFNI CGCG 4 cut(s) 180, 216, 251, 383
BspLI GGNNCC 7 cut(s) 58, 139, 235, 372, 426, 514, 675
BspPI GGATC 2 cut(s) 385, 616
BspT107I GGYRCC 5 cut(s) 56, 137, 233, 370, 424
BspTNI GGTCTC 1 cut(s) 100
BsrBI CCGCTC 2 cut(s) 40, 108
BsrFI RCCGGY 3 cut(s) 53, 236, 676
BsrI ACTGG 1 cut(s) 924
BssAI RCCGGY 3 cut(s) 53, 236, 676
BssECI CCNNGG 6 cut(s) 90, 133, 214, 271, 366, 452
BssMI GATC 7 cut(s) 252, 384, 390, 608, 763, 883, 910
BssT1I CCWWGG 1 cut(s) 452
Bst2UI CCWGG 1 cut(s) 92
Bst6I CTCTTC 2 cut(s) 456, 722
BstBAI YACGTR 2 cut(s) 291, 402
BstC8I GCNNGC 3 cut(s) 55, 229, 678
BstDEI CTNAG 1 cut(s) 747
BstDSI CCRYGG 2 cut(s) 214, 366
BstF5I GGATG 2 cut(s) 808, 859
BstFNI CGCG 4 cut(s) 180, 216, 251, 383
BstH2I RGCGCY 3 cut(s) 60, 374, 428
BstHHI GCGC 3 cut(s) 59, 373, 427
BstKTI GATC 7 cut(s) 255, 387, 393, 611, 766, 886, 913
BstMAI GTCTC 5 cut(s) 100, 187, 299, 358, 884
BstMBI GATC 7 cut(s) 252, 384, 390, 608, 763, 883, 910
BstMCI CGRYCG 3 cut(s) 38, 175, 387
BstMWI GCNNNNNNNGC 4 cut(s) 237, 257, 317, 902
BstNI CCWGG 1 cut(s) 92
BstNSI RCATGY 2 cut(s) 364, 502
BstSCI CCNGG 5 cut(s) 90, 271, 320, 601, 662
BstUI CGCG 4 cut(s) 180, 216, 251, 383
BstV2I GAAGAC 1 cut(s) 271
BstX2I RGATCY 2 cut(s) 390, 883
BstXI CCANNNNNNTGG 1 cut(s) 695
BstYI RGATCY 2 cut(s) 390, 883
BstZI CGGCCG 2 cut(s) 35, 172
BsuRI GGCC 6 cut(s) 37, 174, 457, 644, 662, 699
BtgI CCRYGG 2 cut(s) 214, 366
BtgZI GCGATG 2 cut(s) 34, 142
BtsCI GGATG 2 cut(s) 808, 859
BtsIMutI CAGTG 1 cut(s) 917
BtuMI TCGCGA 1 cut(s) 251
Cac8I GCNNGC 3 cut(s) 55, 229, 678
CfoI GCGC 3 cut(s) 59, 373, 427
Cfr10I RCCGGY 3 cut(s) 53, 236, 676
Cfr13I GGNCC 2 cut(s) 130, 324
Cfr42I CCGCGG 1 cut(s) 217
CseI GACGC 6 cut(s) 95, 169, 229, 235, 317, 426
Csp6I GTAC 1 cut(s) 820
CviAII CATG 2 cut(s) 361, 499
CviQI GTAC 1 cut(s) 820
DdeI CTNAG 1 cut(s) 747
DinI GGCGCC 3 cut(s) 58, 372, 426
DpnI GATC 7 cut(s) 254, 386, 392, 610, 765, 885, 912
DpnII GATC 7 cut(s) 252, 384, 390, 608, 763, 883, 910
DrdI GACNNNNNNGTC 1 cut(s) 92
DseDI GACNNNNNNGTC 1 cut(s) 92
EaeI YGGCCR 5 cut(s) 35, 172, 455, 642, 697
EagI CGGCCG 2 cut(s) 35, 172
Eam1104I CTCTTC 2 cut(s) 456, 722
EarI CTCTTC 2 cut(s) 456, 722
EciI GGCGGA 2 cut(s) 20, 184
EclXI CGGCCG 2 cut(s) 35, 172
Eco130I CCWWGG 1 cut(s) 452
Eco31I GGTCTC 1 cut(s) 100
Eco32I GATATC 1 cut(s) 468
Eco47I GGWCC 2 cut(s) 130, 324
Eco52I CGGCCG 2 cut(s) 35, 172
Eco72I CACGTG 2 cut(s) 291, 402
Eco88I CYCGRG 1 cut(s) 887
EcoO109I RGGNCCY 1 cut(s) 130
EcoRII CCWGG 1 cut(s) 90
EcoRV GATATC 1 cut(s) 468
EcoT14I CCWWGG 1 cut(s) 452
EgeI GGCGCC 3 cut(s) 58, 372, 426
EheI GGCGCC 3 cut(s) 58, 372, 426
ErhI CCWWGG 1 cut(s) 452
Esp3I CGTCTC 2 cut(s) 187, 358
FaeI CATG 2 cut(s) 364, 502
FaiI YATR 7 cut(s) 362, 500, 596, 647, 810, 825, 869
FaqI GGGAC 1 cut(s) 618
FatI CATG 2 cut(s) 360, 498
FauI CCCGC 1 cut(s) 221
FbaI TGATCA 1 cut(s) 910
Fnu4HI GCNGC 7 cut(s) 38, 162, 175, 178, 198, 232, 285
FokI GGATG 2 cut(s) 815, 866
Fsp4HI GCNGC 7 cut(s) 38, 162, 175, 178, 198, 232, 285
FspBI CTAG 1 cut(s) 767
GlaI GCGC 3 cut(s) 58, 372, 426
GluI GCNGC 7 cut(s) 38, 162, 175, 178, 198, 232, 285
GsaI CCCAGC 1 cut(s) 801
HaeII RGCGCY 3 cut(s) 60, 374, 428
HaeIII GGCC 6 cut(s) 37, 174, 457, 644, 662, 699
HgaI GACGC 6 cut(s) 95, 169, 229, 235, 317, 426
HhaI GCGC 3 cut(s) 59, 373, 427
Hin1II CATG 2 cut(s) 364, 502
Hin6I GCGC 3 cut(s) 57, 371, 425
HinP1I GCGC 3 cut(s) 57, 371, 425
HphI GGTGA 2 cut(s) 577, 677
Hpy166II GTNNAC 3 cut(s) 77, 366, 789
Hpy188I TCNGA 7 cut(s) 307, 442, 523, 529, 576, 582, 588
Hpy188III TCNNGA 5 cut(s) 250, 388, 479, 887, 889
Hpy8I GTNNAC 3 cut(s) 77, 366, 789
HpyAV CCTTC 5 cut(s) 76, 427, 529, 745, 895
HpyCH4IV ACGT 6 cut(s) 123, 168, 204, 290, 342, 401
HpyCH4V TGCA 1 cut(s) 808
HpyF10VI GCNNNNNNNGC 4 cut(s) 237, 257, 317, 902
HpyF3I CTNAG 1 cut(s) 747
HpySE526I ACGT 6 cut(s) 123, 168, 204, 290, 342, 401
Hsp92II CATG 2 cut(s) 364, 502
HspAI GCGC 3 cut(s) 57, 371, 425
KasI GGCGCC 3 cut(s) 56, 370, 424
KroI GCCGGC 2 cut(s) 53, 676
KroNI GCCGGC 2 cut(s) 55, 678
Ksp22I TGATCA 1 cut(s) 910
KspI CCGCGG 1 cut(s) 217
Kzo9I GATC 7 cut(s) 252, 384, 390, 608, 763, 883, 910
LmnI GCTCC 4 cut(s) 113, 512, 666, 673
MaeI CTAG 1 cut(s) 767
MaeII ACGT 6 cut(s) 123, 168, 204, 290, 342, 401
MalI GATC 7 cut(s) 254, 386, 392, 610, 765, 885, 912
MbiI CCGCTC 2 cut(s) 40, 108
MboI GATC 7 cut(s) 252, 384, 390, 608, 763, 883, 910
MflI RGATCY 2 cut(s) 390, 883
MlsI TGGCCA 1 cut(s) 699
MluCI AATT 3 cut(s) 507, 597, 739
MluNI TGGCCA 1 cut(s) 699
Mly113I GGCGCC 3 cut(s) 57, 371, 425
MlyI GAGTC 6 cut(s) 56, 213, 285, 452, 640, 822
MmeI TCCRAC 3 cut(s) 330, 363, 420
Mox20I TGGCCA 1 cut(s) 699
MreI CGCCGGCG 1 cut(s) 53
MroNI GCCGGC 2 cut(s) 53, 676
MscI TGGCCA 1 cut(s) 699
MseI TTAA 2 cut(s) 657, 743
Msp20I TGGCCA 1 cut(s) 699
MspA1I CMGCKG 2 cut(s) 216, 797
MspR9I CCNGG 5 cut(s) 92, 273, 322, 603, 664
MvaI CCWGG 1 cut(s) 92
MvnI CGCG 4 cut(s) 180, 216, 251, 383
MwoI GCNNNNNNNGC 4 cut(s) 237, 257, 317, 902
NaeI GCCGGC 2 cut(s) 55, 678
NarI GGCGCC 3 cut(s) 57, 371, 425
NciI CCSGG 4 cut(s) 273, 322, 603, 664
NdeII GATC 7 cut(s) 252, 384, 390, 608, 763, 883, 910
NgoMIV GCCGGC 2 cut(s) 53, 676
NlaIII CATG 2 cut(s) 364, 502
NlaIV GGNNCC 7 cut(s) 58, 139, 235, 372, 426, 514, 675
NmeAIII GCCGAG 1 cut(s) 114
NruI TCGCGA 1 cut(s) 251
NspI RCATGY 2 cut(s) 364, 502
PaeR7I CTCGAG 1 cut(s) 887
PcsI WCGNNNNNNNCGW 5 cut(s) 57, 165, 177, 348, 393
PdiI GCCGGC 2 cut(s) 55, 678
PfeI GAWTC 6 cut(s) 377, 518, 524, 571, 577, 583
PflMI CCANNNNNTGG 2 cut(s) 509, 706
PkrI GCNGC 7 cut(s) 39, 163, 176, 179, 199, 233, 286
Ple19I CGATCG 1 cut(s) 387
PleI GAGTC 6 cut(s) 56, 213, 284, 451, 639, 821
PluTI GGCGCC 3 cut(s) 60, 374, 428
PmaCI CACGTG 2 cut(s) 291, 402
PmlI CACGTG 2 cut(s) 291, 402
PpsI GAGTC 6 cut(s) 56, 213, 284, 451, 639, 821
Ppu21I YACGTR 2 cut(s) 291, 402
PpuMI RGGWCCY 1 cut(s) 130
Psp5II RGGWCCY 1 cut(s) 130
Psp6I CCWGG 1 cut(s) 90
PspCI CACGTG 2 cut(s) 291, 402
PspFI CCCAGC 1 cut(s) 797
PspGI CCWGG 1 cut(s) 90
PspN4I GGNNCC 7 cut(s) 58, 139, 235, 372, 426, 514, 675
PspPI GGNCC 2 cut(s) 130, 324
PspPPI RGGWCCY 1 cut(s) 130
PsuI RGATCY 2 cut(s) 390, 883
PvuI CGATCG 1 cut(s) 387
PvuII CAGCTG 1 cut(s) 797
RruI TCGCGA 1 cut(s) 251
RsaI GTAC 1 cut(s) 821
RsaNI GTAC 1 cut(s) 820
SacII CCGCGG 1 cut(s) 217
SaqAI TTAA 2 cut(s) 657, 743
SatI GCNGC 7 cut(s) 38, 162, 175, 178, 198, 232, 285
Sau3AI GATC 7 cut(s) 252, 384, 390, 608, 763, 883, 910
Sau96I GGNCC 2 cut(s) 130, 324
ScaI AGTACT 1 cut(s) 821
SchI GAGTC 6 cut(s) 56, 213, 285, 452, 640, 822
ScrFI CCNGG 5 cut(s) 92, 273, 322, 603, 664
SfoI GGCGCC 3 cut(s) 58, 372, 426
Sfr274I CTCGAG 1 cut(s) 887
Sfr303I CCGCGG 1 cut(s) 217
SgrAI CRCCGGYG 2 cut(s) 53, 236
SgrBI CCGCGG 1 cut(s) 217
SinI GGWCC 2 cut(s) 130, 324
SlaI CTCGAG 1 cut(s) 887
SmlI CTYRAG 1 cut(s) 887
SmoI CTYRAG 1 cut(s) 887
Sse9I AATT 3 cut(s) 507, 597, 739
SspDI GGCGCC 3 cut(s) 56, 370, 424
SspMI CTAG 1 cut(s) 767
StyD4I CCNGG 5 cut(s) 90, 271, 320, 601, 662
StyI CCWWGG 1 cut(s) 452
TaiI ACGT 6 cut(s) 126, 171, 207, 293, 345, 404
TaqI TCGA 8 cut(s) 120, 126, 207, 387, 396, 446, 876, 888
TasI AATT 3 cut(s) 507, 597, 739
TatI WGTACW 1 cut(s) 819
TauI GCSGC 7 cut(s) 40, 164, 177, 180, 200, 234, 287
TfiI GAWTC 6 cut(s) 377, 518, 524, 571, 577, 583
Tru1I TTAA 2 cut(s) 657, 743
Tru9I TTAA 2 cut(s) 657, 743
TscAI CASTG 1 cut(s) 924
TspDTI ATGAA 4 cut(s) 506, 629, 840, 894
TspRI CASTG 1 cut(s) 924
Van91I CCANNNNNTGG 2 cut(s) 509, 706
VpaK11BI GGWCC 2 cut(s) 130, 324
XapI RAATTY 1 cut(s) 739
XceI RCATGY 2 cut(s) 364, 502
XhoI CTCGAG 1 cut(s) 887
XspI CTAG 1 cut(s) 767
ZraI GACGTC 3 cut(s) 124, 169, 205
ZrmI AGTACT 1 cut(s) 821
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.