Rmu_ssc0000467.1_g000022

DNA-damage-repair toleration protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_multiflora
Rmu_ssc0000467.1
OG0014381
Physical Location & Seq
Forward (+)
69413 .. 70171
759 bp
Loading structure...
UTR
Exon/CDS
Intron
Rmu_ssc0000467.1_g000022.1.cds

Sequence Viewer

Length: 759 bp
atgcaaatagggtactcctccgccgccgacgtcgaaacccgcggactcgtcgcctgcggcaccggcgtcggcgtcgcgatcttcgccaacaagttccccggagtcttcgccgccacgtgtctctccccctccgacgccctcaacgcccggtccatcaacaactccaacgtcctcgccgtctccggcaagtccacggcgccggaatccgccatcgagatcctcgacacgtggctcaacactcccttcaaggcgccgtgtccggcgtcggagtcgaaaccttggccggaagagatatcttcttttcttgataactcaatgaatgacatgccacaaattggagctgattctgatttgaaggagagttcttgctctatctgctgtttggtgaagaatcggaatttgaatccgattgatataattccgggtggatcaatgaagatattgagggagagtcccacatcggccatagttaggttcaaggccgggagcgtggagccggcgcaccaccacactttcgggcacgatttggttgtgatggaggggaagaagagtgtgtggaatttaactaagaaggagagatttgatctagttgttggggattacttgtttactccagctggggatgtgcatagagtcaagtactatgaagataccgagttctttatcaagtgggatgggaaatgggatatgttcttcgatgaagatctcgagactgcgaagaaggctgttgatcaagcactggagaatgagggtaagtga

Protein Analysis

252

Amino Acids

27.54

Weight (kDa)

5.01

Isoelectric Point (pI)

40.13

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0014381)

Species Orthologous Gene IDs
arabidopsis_thaliana AT3G04880
fragaria_vesca FvH4_6g03430
malus_domestica MD12G1237200.v1.1
prunus_persica Prupe.6G339900_v2.0.a1
pyrus_communis pycom12g21810
rosa_chinensis RchiOBHm_Chr3g0451931
rosa_laevigata RLG00000025637
rosa_multiflora Rmu_sc0002901.1_g000002 Rmu_ssc0000467.1_g000022
rosa_roxburghii Rroxscaffold_164G00436200 Rroxscaffold_6G00429100
rosa_rugosa Rorug02G0637500
rosa_samantha Rh3AG039200 Rh3BG040500 Rh3CG039000 Rh3DG039700
rosa_wichuraiana Rw3G002930

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AatII GACGTC 1 cut(s) 33
AccB1I GGYRCC 3 cut(s) 59, 196, 250
AccB7I CCANNNNNTGG 1 cut(s) 335
AccII CGCG 2 cut(s) 42, 77
AciI CCGC 7 cut(s) 21, 24, 40, 42, 57, 111, 207
AclWI GGATC 2 cut(s) 211, 436
AcoI YGGCCR 2 cut(s) 281, 462
AcsI RAATTY 2 cut(s) 397, 559
AcvI CACGTG 2 cut(s) 117, 228
AcyI GRCGYC 7 cut(s) 30, 66, 72, 135, 197, 251, 263
AfaI GTAC 2 cut(s) 14, 641
AfiI CCNNNNNNNGG 2 cut(s) 335, 471
AflIII ACRYGT 2 cut(s) 116, 225
AgsI TTSAA 4 cut(s) 247, 355, 403, 478
AluBI AGCT 2 cut(s) 341, 617
AluI AGCT 2 cut(s) 341, 617
Alw26I GTCTC 3 cut(s) 125, 184, 704
AlwI GGATC 2 cut(s) 211, 436
Ama87I CYCGRG 1 cut(s) 707
AoxI GGCC 3 cut(s) 281, 462, 480
ApoI RAATTY 2 cut(s) 397, 559
AspLEI GCGC 3 cut(s) 199, 253, 502
AspS9I GGNCC 1 cut(s) 150
AsuC2I CCSGG 4 cut(s) 99, 148, 423, 484
AsuHPI GGTGA 1 cut(s) 397
AvaI CYCGRG 1 cut(s) 707
AvaII GGWCC 1 cut(s) 150
BaeGI GKGCMC 1 cut(s) 522
BanI GGYRCC 3 cut(s) 59, 196, 250
BbrPI CACGTG 2 cut(s) 117, 228
BbsI GAAGAC 1 cut(s) 97
BccI CCATC 4 cut(s) 161, 218, 529, 668
BceAI ACGGC 3 cut(s) 161, 210, 238
BcgI CGANNNNNNTGC 2 cut(s) 49, 83
BclI TGATCA 1 cut(s) 730
BcnI CCSGG 4 cut(s) 99, 148, 423, 484
BcoDI GTCTC 3 cut(s) 125, 184, 704
BfaI CTAG 1 cut(s) 587
BfoI RGCGCY 2 cut(s) 200, 254
BglII AGATCT 1 cut(s) 703
BisI GCNGC 3 cut(s) 24, 58, 111
BlsI GCNGC 3 cut(s) 25, 59, 112
BmcAI AGTACT 1 cut(s) 641
Bme1390I CCNGG 4 cut(s) 99, 148, 423, 484
Bme18I GGWCC 1 cut(s) 150
BmeT110I CYCGRG 1 cut(s) 707
BmgT120I GGNCC 1 cut(s) 150
BmiI GGNNCC 4 cut(s) 61, 198, 252, 495
BmrFI CCNGG 4 cut(s) 99, 148, 423, 484
BpiI GAAGAC 1 cut(s) 97
BpmI CTGGAG 1 cut(s) 597
BpuMI CCSGG 4 cut(s) 99, 148, 423, 484
BsaAI YACGTR 2 cut(s) 117, 228
BsaBI GATNNNNATC 1 cut(s) 702
BsaHI GRCGYC 7 cut(s) 30, 66, 72, 135, 197, 251, 263
BsaJI CCNNGG 4 cut(s) 40, 97, 192, 278
Bsc4I CCNNNNNNNGG 2 cut(s) 335, 471
Bse118I RCCGGY 2 cut(s) 62, 496
Bse1I ACTGG 1 cut(s) 744
Bse8I GATNNNNATC 1 cut(s) 702
BseDI CCNNGG 4 cut(s) 40, 97, 192, 278
BseGI GGATG 2 cut(s) 628, 679
BseJI GATNNNNATC 1 cut(s) 702
BseLI CCNNNNNNNGG 2 cut(s) 335, 471
BseNI ACTGG 1 cut(s) 744
BseRI GAGGAG 1 cut(s) 7
BseSI GKGCMC 1 cut(s) 522
BseYI CCCAGC 1 cut(s) 617
Bsh1236I CGCG 2 cut(s) 42, 77
BshFI GGCC 3 cut(s) 283, 464, 482
BshNI GGYRCC 3 cut(s) 59, 196, 250
BsiHKCI CYCGRG 1 cut(s) 707
BslFI GGGAC 1 cut(s) 438
BslI CCNNNNNNNGG 2 cut(s) 335, 471
BsmAI GTCTC 3 cut(s) 125, 184, 704
BsmBI CGTCTC 1 cut(s) 184
BsmFI GGGAC 1 cut(s) 438
BsnI GGCC 3 cut(s) 283, 464, 482
BsoBI CYCGRG 1 cut(s) 707
Bsp1286I GDGCHC 1 cut(s) 522
Bsp143I GATC 6 cut(s) 78, 216, 428, 583, 703, 730
Bsp68I TCGCGA 1 cut(s) 77
BspACI CCGC 7 cut(s) 21, 24, 40, 42, 57, 111, 207
BspANI GGCC 3 cut(s) 283, 464, 482
BspFNI CGCG 2 cut(s) 42, 77
BspLI GGNNCC 4 cut(s) 61, 198, 252, 495
BspPI GGATC 2 cut(s) 211, 436
BspT107I GGYRCC 3 cut(s) 59, 196, 250
BsrFI RCCGGY 2 cut(s) 62, 496
BsrI ACTGG 1 cut(s) 744
BssAI RCCGGY 2 cut(s) 62, 496
BssECI CCNNGG 4 cut(s) 40, 97, 192, 278
BssMI GATC 6 cut(s) 78, 216, 428, 583, 703, 730
BssNI GRCGYC 7 cut(s) 30, 66, 72, 135, 197, 251, 263
BssT1I CCWWGG 1 cut(s) 278
Bst6I CTCTTC 2 cut(s) 282, 542
BstACI GRCGYC 7 cut(s) 30, 66, 72, 135, 197, 251, 263
BstBAI YACGTR 2 cut(s) 117, 228
BstC8I GCNNGC 2 cut(s) 55, 498
BstDEI CTNAG 1 cut(s) 567
BstDSI CCRYGG 2 cut(s) 40, 192
BstF5I GGATG 2 cut(s) 628, 679
BstFNI CGCG 2 cut(s) 42, 77
BstH2I RGCGCY 2 cut(s) 200, 254
BstHHI GCGC 3 cut(s) 199, 253, 502
BstKTI GATC 6 cut(s) 81, 219, 431, 586, 706, 733
BstMAI GTCTC 3 cut(s) 125, 184, 704
BstMBI GATC 6 cut(s) 78, 216, 428, 583, 703, 730
BstMWI GCNNNNNNNGC 5 cut(s) 63, 83, 143, 375, 722
BstNSI RCATGY 1 cut(s) 328
BstSCI CCNGG 4 cut(s) 97, 146, 421, 482
BstSLI GKGCMC 1 cut(s) 522
BstUI CGCG 2 cut(s) 42, 77
BstV2I GAAGAC 1 cut(s) 97
BstX2I RGATCY 2 cut(s) 216, 703
BstYI RGATCY 2 cut(s) 216, 703
BsuRI GGCC 3 cut(s) 283, 464, 482
BtgI CCRYGG 2 cut(s) 40, 192
BtsCI GGATG 2 cut(s) 628, 679
BtsIMutI CAGTG 1 cut(s) 737
BtuMI TCGCGA 1 cut(s) 77
Cac8I GCNNGC 2 cut(s) 55, 498
CfoI GCGC 3 cut(s) 199, 253, 502
Cfr10I RCCGGY 2 cut(s) 62, 496
Cfr13I GGNCC 1 cut(s) 150
Cfr42I CCGCGG 1 cut(s) 43
CseI GACGC 4 cut(s) 55, 61, 143, 252
Csp6I GTAC 2 cut(s) 13, 640
CviAII CATG 1 cut(s) 325
CviJI RGCY 8 cut(s) 232, 283, 341, 464, 482, 496, 617, 725
CviKI_1 RGCY 8 cut(s) 232, 283, 341, 464, 482, 496, 617, 725
CviQI GTAC 2 cut(s) 13, 640
DdeI CTNAG 1 cut(s) 567
DinI GGCGCC 2 cut(s) 198, 252
DpnI GATC 6 cut(s) 80, 218, 430, 585, 705, 732
DpnII GATC 6 cut(s) 78, 216, 428, 583, 703, 730
EaeI YGGCCR 2 cut(s) 281, 462
Eam1104I CTCTTC 2 cut(s) 282, 542
EarI CTCTTC 2 cut(s) 282, 542
EciI GGCGGA 2 cut(s) 10, 196
Eco130I CCWWGG 1 cut(s) 278
Eco32I GATATC 1 cut(s) 294
Eco47I GGWCC 1 cut(s) 150
Eco72I CACGTG 2 cut(s) 117, 228
Eco88I CYCGRG 1 cut(s) 707
EcoRV GATATC 1 cut(s) 294
EcoT14I CCWWGG 1 cut(s) 278
EgeI GGCGCC 2 cut(s) 198, 252
EheI GGCGCC 2 cut(s) 198, 252
ErhI CCWWGG 1 cut(s) 278
Esp3I CGTCTC 1 cut(s) 184
FaeI CATG 1 cut(s) 328
FaiI YATR 6 cut(s) 326, 416, 467, 630, 645, 689
FaqI GGGAC 1 cut(s) 438
FatI CATG 1 cut(s) 324
FauI CCCGC 1 cut(s) 47
FbaI TGATCA 1 cut(s) 730
Fnu4HI GCNGC 3 cut(s) 24, 58, 111
FokI GGATG 2 cut(s) 635, 686
Fsp4HI GCNGC 3 cut(s) 24, 58, 111
FspBI CTAG 1 cut(s) 587
GlaI GCGC 3 cut(s) 198, 252, 501
GluI GCNGC 3 cut(s) 24, 58, 111
GsaI CCCAGC 1 cut(s) 621
GsuI CTGGAG 1 cut(s) 597
HaeII RGCGCY 2 cut(s) 200, 254
HaeIII GGCC 3 cut(s) 283, 464, 482
HgaI GACGC 4 cut(s) 55, 61, 143, 252
HhaI GCGC 3 cut(s) 199, 253, 502
Hin1I GRCGYC 7 cut(s) 30, 66, 72, 135, 197, 251, 263
Hin1II CATG 1 cut(s) 328
Hin6I GCGC 3 cut(s) 197, 251, 500
HinP1I GCGC 3 cut(s) 197, 251, 500
HinfI GANTC 9 cut(s) 45, 102, 203, 269, 344, 391, 403, 451, 633
HphI GGTGA 1 cut(s) 397
Hpy166II GTNNAC 2 cut(s) 192, 609
Hpy188I TCNGA 5 cut(s) 133, 268, 349, 396, 408
Hpy188III TCNNGA 5 cut(s) 76, 214, 305, 707, 709
Hpy8I GTNNAC 2 cut(s) 192, 609
Hpy99I CGWCG 7 cut(s) 32, 35, 53, 71, 77, 137, 268
HpyAV CCTTC 4 cut(s) 253, 349, 565, 715
HpyCH4IV ACGT 4 cut(s) 30, 116, 168, 227
HpyCH4V TGCA 2 cut(s) 4, 628
HpyF10VI GCNNNNNNNGC 5 cut(s) 63, 83, 143, 375, 722
HpyF3I CTNAG 1 cut(s) 567
HpySE526I ACGT 4 cut(s) 30, 116, 168, 227
Hsp92I GRCGYC 7 cut(s) 30, 66, 72, 135, 197, 251, 263
Hsp92II CATG 1 cut(s) 328
HspAI GCGC 3 cut(s) 197, 251, 500
KasI GGCGCC 2 cut(s) 196, 250
KroI GCCGGC 1 cut(s) 496
KroNI GCCGGC 1 cut(s) 498
Ksp22I TGATCA 1 cut(s) 730
KspI CCGCGG 1 cut(s) 43
Kzo9I GATC 6 cut(s) 78, 216, 428, 583, 703, 730
LmnI GCTCC 3 cut(s) 338, 486, 493
MaeI CTAG 1 cut(s) 587
MaeII ACGT 4 cut(s) 30, 116, 168, 227
MalI GATC 6 cut(s) 80, 218, 430, 585, 705, 732
MboI GATC 6 cut(s) 78, 216, 428, 583, 703, 730
MflI RGATCY 2 cut(s) 216, 703
MhlI GDGCHC 1 cut(s) 522
MluCI AATT 4 cut(s) 333, 397, 417, 559
Mly113I GGCGCC 2 cut(s) 197, 251
MlyI GAGTC 5 cut(s) 39, 111, 278, 460, 642
MmeI TCCRAC 3 cut(s) 156, 189, 246
MnlI CCTC 8 cut(s) 28, 139, 149, 182, 230, 438, 532, 742
MroNI GCCGGC 1 cut(s) 496
MseI TTAA 1 cut(s) 563
MspA1I CMGCKG 2 cut(s) 42, 617
MspR9I CCNGG 4 cut(s) 99, 148, 423, 484
MvnI CGCG 2 cut(s) 42, 77
MwoI GCNNNNNNNGC 5 cut(s) 63, 83, 143, 375, 722
NaeI GCCGGC 1 cut(s) 498
NarI GGCGCC 2 cut(s) 197, 251
NciI CCSGG 4 cut(s) 99, 148, 423, 484
NdeII GATC 6 cut(s) 78, 216, 428, 583, 703, 730
NgoMIV GCCGGC 1 cut(s) 496
NlaIII CATG 1 cut(s) 328
NlaIV GGNNCC 4 cut(s) 61, 198, 252, 495
NruI TCGCGA 1 cut(s) 77
NspI RCATGY 1 cut(s) 328
PaeR7I CTCGAG 1 cut(s) 707
PcsI WCGNNNNNNNCGW 2 cut(s) 174, 219
PdiI GCCGGC 1 cut(s) 498
PfeI GAWTC 4 cut(s) 203, 344, 391, 403
PflMI CCANNNNNTGG 1 cut(s) 335
PkrI GCNGC 3 cut(s) 25, 59, 112
PleI GAGTC 5 cut(s) 39, 110, 277, 459, 641
PluTI GGCGCC 2 cut(s) 200, 254
PmaCI CACGTG 2 cut(s) 117, 228
PmlI CACGTG 2 cut(s) 117, 228
PpsI GAGTC 5 cut(s) 39, 110, 277, 459, 641
Ppu21I YACGTR 2 cut(s) 117, 228
PspCI CACGTG 2 cut(s) 117, 228
PspFI CCCAGC 1 cut(s) 617
PspN4I GGNNCC 4 cut(s) 61, 198, 252, 495
PspPI GGNCC 1 cut(s) 150
PsuI RGATCY 2 cut(s) 216, 703
PvuII CAGCTG 1 cut(s) 617
RruI TCGCGA 1 cut(s) 77
RsaI GTAC 2 cut(s) 14, 641
RsaNI GTAC 2 cut(s) 13, 640
SacII CCGCGG 1 cut(s) 43
SaqAI TTAA 1 cut(s) 563
SatI GCNGC 3 cut(s) 24, 58, 111
Sau3AI GATC 6 cut(s) 78, 216, 428, 583, 703, 730
Sau96I GGNCC 1 cut(s) 150
ScaI AGTACT 1 cut(s) 641
SchI GAGTC 5 cut(s) 39, 111, 278, 460, 642
ScrFI CCNGG 4 cut(s) 99, 148, 423, 484
SduI GDGCHC 1 cut(s) 522
SetI ASST 8 cut(s) 33, 119, 171, 230, 280, 343, 476, 619
SfoI GGCGCC 2 cut(s) 198, 252
Sfr274I CTCGAG 1 cut(s) 707
Sfr303I CCGCGG 1 cut(s) 43
SgrAI CRCCGGYG 1 cut(s) 62
SgrBI CCGCGG 1 cut(s) 43
SinI GGWCC 1 cut(s) 150
SlaI CTCGAG 1 cut(s) 707
SmlI CTYRAG 1 cut(s) 707
SmoI CTYRAG 1 cut(s) 707
Sse9I AATT 4 cut(s) 333, 397, 417, 559
SsiI CCGC 7 cut(s) 21, 24, 40, 42, 57, 111, 207
SspDI GGCGCC 2 cut(s) 196, 250
SspMI CTAG 1 cut(s) 587
StyD4I CCNGG 4 cut(s) 97, 146, 421, 482
StyI CCWWGG 1 cut(s) 278
TaiI ACGT 4 cut(s) 33, 119, 171, 230
TaqI TCGA 6 cut(s) 33, 213, 222, 272, 696, 708
TasI AATT 4 cut(s) 333, 397, 417, 559
TatI WGTACW 1 cut(s) 639
TauI GCSGC 3 cut(s) 26, 60, 113
TfiI GAWTC 4 cut(s) 203, 344, 391, 403
Tru1I TTAA 1 cut(s) 563
Tru9I TTAA 1 cut(s) 563
TscAI CASTG 1 cut(s) 744
TspDTI ATGAA 4 cut(s) 332, 449, 660, 714
TspRI CASTG 1 cut(s) 744
Van91I CCANNNNNTGG 1 cut(s) 335
VpaK11BI GGWCC 1 cut(s) 150
XapI RAATTY 2 cut(s) 397, 559
XceI RCATGY 1 cut(s) 328
XhoI CTCGAG 1 cut(s) 707
XspI CTAG 1 cut(s) 587
ZraI GACGTC 1 cut(s) 31
ZrmI AGTACT 1 cut(s) 641
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.