AT3G04890

Uncharacterized conserved protein (DUF2358)

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
arabidopsis_thaliana
3
OG0013501
Physical Location & Seq
Forward (+)
1347559 .. 1350122
2564 bp
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UTR
Exon/CDS
Intron
AT3G04890.4

Sequence Viewer

Length: 651 bp
ATGGCGGGAGTGGCTTGCCAGATATCTATCAGCTCATCTTCGACCTTTAGGAGGGTTAATCAATGGCCACGGTGCTTCTCTGGTTCGCCGGAGAAGAAAACACCAGCTGTTTTGAAGTGGGCGGTTAGTGGAGTTACTGAATTTCTCCGGTTGATCTCCGGTGCTCCGTCTTCAACCTCCATCGCTACAAATAAGGATCGATCAAAGAATGAGGTTACTGCTGGAGATGTCGATGATGTGATGGGGATTTTGAGATCAGATTATCGAAATTTCTACTTCGTCACTGGAGTCTTGACTTCTGCAATTTACTCGGATGATTGCATCTTCGAGGATCCGACTATCAGCTTCCAGGGTACAGAGCTGTATGAACGCAACTTGAAGTTACTGGTTCCGTTCCTCGAAGATGCATCCATTGAACTGCAAAATATGGAGAAGAGTGAGTCGTCCCAAAGAAACTATATACTAGCGACGTGGAAGCTAAGAACTTACCTGAAGCTGCCATGGAGACCATTGATATCGATCAACGGGAATACGGTTTATGATCTGGATAAAGACTTCAAAATTGTGAGGCATGTCGAGAGCTGGAATGTCTCTGCGCTAGAAGCAATCGGGCAGATATTCACCGTCAAGTCTTTTCCCTTCCGTGACTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
DUF2358

Protein Analysis

216

Amino Acids

24.43

Weight (kDa)

6.62

Isoelectric Point (pI)

41.75

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
DUF2358 PF10184 83 - 191 7.4e-25 Uncharacterized conserved protein (DUF2358)
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0013501)

Species Orthologous Gene IDs
arabidopsis_thaliana AT3G04890 AT3G04890 AT3G04890 AT3G04890
fragaria_vesca FvH4_6g03440
malus_domestica MD04G1220800.v1.1
prunus_persica Prupe.6G339800_v2.0.a1
rosa_chinensis RchiOBHm_Chr3g0451941
rosa_laevigata RLG00000025636
rosa_multiflora Rmu_sc0002901.1_g000001
rosa_roxburghii Rroxscaffold_164G00436170 Rroxscaffold_6G00429110
rosa_rugosa Rorug02G0637600
rosa_samantha Rh3AG039300 Rh3BG040600 Rh3CG039100 Rh3DG039800
rosa_wichuraiana Rw3G002940

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AciI CCGC 2 cut(s) 5, 122
AclWI GGATC 3 cut(s) 204, 326, 339
AcoI YGGCCR 1 cut(s) 65
AcsI RAATTY 2 cut(s) 140, 268
AcuI CTGAAG 1 cut(s) 512
AfaI GTAC 1 cut(s) 355
AfiI CCNNNNNNNGG 1 cut(s) 51
AgsI TTSAA 5 cut(s) 115, 174, 379, 416, 559
AjiI CACGTC 1 cut(s) 471
AjnI CCWGG 1 cut(s) 348
AluBI AGCT 7 cut(s) 33, 107, 345, 361, 478, 496, 582
AluI AGCT 7 cut(s) 33, 107, 345, 361, 478, 496, 582
Alw21I GWGCWC 1 cut(s) 166
Alw26I GTCTC 2 cut(s) 499, 595
AlwI GGATC 3 cut(s) 204, 326, 339
AoxI GGCC 1 cut(s) 65
ApeKI GCWGC 1 cut(s) 496
ApoI RAATTY 2 cut(s) 140, 268
AspLEI GCGC 1 cut(s) 598
AsuHPI GGTGA 1 cut(s) 613
BalI TGGCCA 1 cut(s) 67
BamHI GGATCC 1 cut(s) 331
BbsI GAAGAC 1 cut(s) 162
Bbv12I GWGCWC 1 cut(s) 166
BbvI GCAGC 1 cut(s) 483
BccI CCATC 2 cut(s) 188, 235
BcgI CGANNNNNNTGC 2 cut(s) 291, 325
BciT130I CCWGG 1 cut(s) 350
BcoDI GTCTC 2 cut(s) 499, 595
BfaI CTAG 2 cut(s) 464, 599
BisI GCNGC 1 cut(s) 497
BlsI GCNGC 1 cut(s) 498
Bme1390I CCNGG 1 cut(s) 350
BmgBI CACGTC 1 cut(s) 471
BmiI GGNNCC 2 cut(s) 333, 390
BmrFI CCNGG 1 cut(s) 350
BmsI GCATC 3 cut(s) 330, 394, 416
BpiI GAAGAC 1 cut(s) 162
BpmI CTGGAG 2 cut(s) 243, 306
Bsa29I ATCGAT 2 cut(s) 199, 518
BsaBI GATNNNNATC 2 cut(s) 26, 518
BsaI GGTCTC 1 cut(s) 499
BsaJI CCNNGG 3 cut(s) 68, 349, 500
BsaWI WCCGGW 2 cut(s) 147, 158
Bsc4I CCNNNNNNNGG 1 cut(s) 51
Bse1I ACTGG 2 cut(s) 289, 390
Bse8I GATNNNNATC 2 cut(s) 26, 518
BseBI CCWGG 1 cut(s) 350
BseCI ATCGAT 2 cut(s) 199, 518
BseDI CCNNGG 3 cut(s) 68, 349, 500
BseGI GGATG 2 cut(s) 319, 407
BseJI GATNNNNATC 2 cut(s) 26, 518
BseLI CCNNNNNNNGG 1 cut(s) 51
BseNI ACTGG 2 cut(s) 289, 390
BseXI GCAGC 1 cut(s) 483
BshFI GGCC 1 cut(s) 67
BshVI ATCGAT 2 cut(s) 199, 518
BsiHKAI GWGCWC 1 cut(s) 166
BsiSI CCGG 3 cut(s) 89, 148, 159
BslFI GGGAC 1 cut(s) 430
BslI CCNNNNNNNGG 1 cut(s) 51
BsmAI GTCTC 2 cut(s) 499, 595
BsmFI GGGAC 1 cut(s) 430
BsnI GGCC 1 cut(s) 67
Bso31I GGTCTC 1 cut(s) 499
Bsp1286I GDGCHC 1 cut(s) 166
Bsp143I GATC 7 cut(s) 153, 196, 200, 254, 331, 519, 541
Bsp19I CCATGG 1 cut(s) 500
BspACI CCGC 2 cut(s) 5, 122
BspANI GGCC 1 cut(s) 67
BspDI ATCGAT 2 cut(s) 199, 518
BspLI GGNNCC 2 cut(s) 333, 390
BspPI GGATC 3 cut(s) 204, 326, 339
BspTNI GGTCTC 1 cut(s) 499
BsrI ACTGG 2 cut(s) 289, 390
BssECI CCNNGG 3 cut(s) 68, 349, 500
BssMI GATC 7 cut(s) 153, 196, 200, 254, 331, 519, 541
BssT1I CCWWGG 1 cut(s) 500
Bst2UI CCWGG 1 cut(s) 350
Bst4CI ACNGT 3 cut(s) 72, 535, 625
Bst6I CTCTTC 1 cut(s) 428
BstC8I GCNNGC 1 cut(s) 16
BstDEI CTNAG 1 cut(s) 479
BstDSI CCRYGG 2 cut(s) 68, 500
BstENI CCTNNNNNAGG 1 cut(s) 49
BstF5I GGATG 2 cut(s) 319, 407
BstHHI GCGC 1 cut(s) 598
BstKTI GATC 7 cut(s) 156, 199, 203, 257, 334, 522, 544
BstMAI GTCTC 2 cut(s) 499, 595
BstMBI GATC 7 cut(s) 153, 196, 200, 254, 331, 519, 541
BstMWI GCNNNNNNNGC 2 cut(s) 11, 602
BstNI CCWGG 1 cut(s) 350
BstNSI RCATGY 1 cut(s) 575
BstSCI CCNGG 1 cut(s) 348
BstV1I GCAGC 1 cut(s) 483
BstV2I GAAGAC 1 cut(s) 162
BstX2I RGATCY 1 cut(s) 331
BstYI RGATCY 1 cut(s) 331
Bsu15I ATCGAT 2 cut(s) 199, 518
BsuRI GGCC 1 cut(s) 67
BsuTUI ATCGAT 2 cut(s) 199, 518
BtgI CCRYGG 2 cut(s) 68, 500
BtgZI GCGATG 1 cut(s) 166
BtrI CACGTC 1 cut(s) 471
BtsCI GGATG 2 cut(s) 319, 407
BtsIMutI CAGTG 1 cut(s) 282
Cac8I GCNNGC 1 cut(s) 16
CfoI GCGC 1 cut(s) 598
ClaI ATCGAT 2 cut(s) 199, 518
Csp6I GTAC 1 cut(s) 354
CviAII CATG 2 cut(s) 501, 572
CviJI RGCY 9 cut(s) 14, 33, 67, 107, 345, 361, 478, 496, 582
CviKI_1 RGCY 9 cut(s) 14, 33, 67, 107, 345, 361, 478, 496, 582
CviQI GTAC 1 cut(s) 354
DdeI CTNAG 1 cut(s) 479
DpnI GATC 7 cut(s) 155, 198, 202, 256, 333, 521, 543
DpnII GATC 7 cut(s) 153, 196, 200, 254, 331, 519, 541
EaeI YGGCCR 1 cut(s) 65
Eam1104I CTCTTC 1 cut(s) 428
EarI CTCTTC 1 cut(s) 428
Eco130I CCWWGG 1 cut(s) 500
Eco31I GGTCTC 1 cut(s) 499
Eco32I GATATC 2 cut(s) 24, 516
Eco57I CTGAAG 1 cut(s) 512
EcoNI CCTNNNNNAGG 1 cut(s) 49
EcoRII CCWGG 1 cut(s) 348
EcoRV GATATC 2 cut(s) 24, 516
EcoT14I CCWWGG 1 cut(s) 500
EcoT22I ATGCAT 1 cut(s) 409
ErhI CCWWGG 1 cut(s) 500
FaeI CATG 2 cut(s) 504, 575
FaiI YATR 7 cut(s) 366, 428, 459, 461, 502, 540, 573
FaqI GGGAC 1 cut(s) 430
FatI CATG 2 cut(s) 500, 571
Fnu4HI GCNGC 1 cut(s) 497
FokI GGATG 2 cut(s) 326, 394
Fsp4HI GCNGC 1 cut(s) 497
FspBI CTAG 2 cut(s) 464, 599
GlaI GCGC 1 cut(s) 597
GluI GCNGC 1 cut(s) 497
GsuI CTGGAG 2 cut(s) 243, 306
HaeIII GGCC 1 cut(s) 67
HapII CCGG 3 cut(s) 89, 148, 159
HhaI GCGC 1 cut(s) 598
Hin1II CATG 2 cut(s) 504, 575
Hin6I GCGC 1 cut(s) 596
HinP1I GCGC 1 cut(s) 596
HinfI GANTC 2 cut(s) 288, 440
HpaII CCGG 3 cut(s) 89, 148, 159
HphI GGTGA 1 cut(s) 613
Hpy188I TCNGA 3 cut(s) 259, 313, 336
Hpy188III TCNNGA 3 cut(s) 292, 545, 577
Hpy99I CGWCG 1 cut(s) 472
HpyAV CCTTC 1 cut(s) 649
HpyCH4III ACNGT 3 cut(s) 72, 535, 625
HpyCH4IV ACGT 1 cut(s) 470
HpyCH4V TGCA 4 cut(s) 302, 321, 407, 421
HpyF10VI GCNNNNNNNGC 2 cut(s) 11, 602
HpyF3I CTNAG 1 cut(s) 479
HpySE526I ACGT 1 cut(s) 470
Hsp92II CATG 2 cut(s) 504, 575
HspAI GCGC 1 cut(s) 596
Kzo9I GATC 7 cut(s) 153, 196, 200, 254, 331, 519, 541
LmnI GCTCC 1 cut(s) 169
Lsp1109I GCAGC 1 cut(s) 483
LweI GCATC 3 cut(s) 330, 394, 416
MaeI CTAG 2 cut(s) 464, 599
MaeII ACGT 1 cut(s) 470
MaeIII GTNAC 5 cut(s) 133, 214, 280, 381, 644
MalI GATC 7 cut(s) 155, 198, 202, 256, 333, 521, 543
MboI GATC 7 cut(s) 153, 196, 200, 254, 331, 519, 541
MboII GAAGA 6 cut(s) 30, 106, 162, 316, 413, 445
MflI RGATCY 1 cut(s) 331
MhlI GDGCHC 1 cut(s) 166
MlsI TGGCCA 1 cut(s) 67
MluCI AATT 4 cut(s) 140, 268, 303, 561
MluNI TGGCCA 1 cut(s) 67
MlyI GAGTC 2 cut(s) 297, 449
MmeI TCCRAC 1 cut(s) 359
MnlI CCTC 6 cut(s) 45, 187, 205, 322, 407, 561
Mox20I TGGCCA 1 cut(s) 67
Mph1103I ATGCAT 1 cut(s) 409
MscI TGGCCA 1 cut(s) 67
MseI TTAA 1 cut(s) 57
Msp20I TGGCCA 1 cut(s) 67
MspA1I CMGCKG 1 cut(s) 107
MspI CCGG 3 cut(s) 89, 148, 159
MspR9I CCNGG 1 cut(s) 350
MvaI CCWGG 1 cut(s) 350
MwoI GCNNNNNNNGC 2 cut(s) 11, 602
NcoI CCATGG 1 cut(s) 500
NdeII GATC 7 cut(s) 153, 196, 200, 254, 331, 519, 541
NlaIII CATG 2 cut(s) 504, 575
NlaIV GGNNCC 2 cut(s) 333, 390
NmuCI GTSAC 2 cut(s) 280, 644
NsiI ATGCAT 1 cut(s) 409
NspI RCATGY 1 cut(s) 575
PkrI GCNGC 1 cut(s) 498
PleI GAGTC 2 cut(s) 296, 448
PpsI GAGTC 2 cut(s) 296, 448
Psp6I CCWGG 1 cut(s) 348
PspGI CCWGG 1 cut(s) 348
PspN4I GGNNCC 2 cut(s) 333, 390
PsuI RGATCY 1 cut(s) 331
PvuII CAGCTG 1 cut(s) 107
RsaI GTAC 1 cut(s) 355
RsaNI GTAC 1 cut(s) 354
SaqAI TTAA 1 cut(s) 57
SatI GCNGC 1 cut(s) 497
Sau3AI GATC 7 cut(s) 153, 196, 200, 254, 331, 519, 541
SchI GAGTC 2 cut(s) 297, 449
ScrFI CCNGG 1 cut(s) 350
SduI GDGCHC 1 cut(s) 166
SfaNI GCATC 3 cut(s) 330, 394, 416
Sse9I AATT 4 cut(s) 140, 268, 303, 561
SsiI CCGC 2 cut(s) 5, 122
SspMI CTAG 2 cut(s) 464, 599
StyD4I CCNGG 1 cut(s) 348
StyI CCWWGG 1 cut(s) 500
TaaI ACNGT 3 cut(s) 72, 535, 625
TaiI ACGT 1 cut(s) 473
TaqI TCGA 8 cut(s) 41, 199, 231, 265, 327, 399, 518, 576
TasI AATT 4 cut(s) 140, 268, 303, 561
Tru1I TTAA 1 cut(s) 57
Tru9I TTAA 1 cut(s) 57
TscAI CASTG 1 cut(s) 289
TseFI GTSAC 2 cut(s) 280, 644
TseI GCWGC 1 cut(s) 496
Tsp45I GTSAC 2 cut(s) 280, 644
TspDTI ATGAA 1 cut(s) 381
TspGWI ACGGA 3 cut(s) 156, 381, 632
TspRI CASTG 1 cut(s) 289
XagI CCTNNNNNAGG 1 cut(s) 49
XapI RAATTY 2 cut(s) 140, 268
XceI RCATGY 1 cut(s) 575
XspI CTAG 2 cut(s) 464, 599
Zsp2I ATGCAT 1 cut(s) 409
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.