Rorug02G0637600

Uncharacterized conserved protein (DUF2358)

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_rugosa
GWHBQTZ00000002
OG0013501
Physical Location & Seq
Reverse (-)
75072917 .. 75073240
324 bp
Loading structure...
UTR
Exon/CDS
Intron
Rorug02G0637600.1

Sequence Viewer

Length: 324 bp
ATGGTTAGTACTACTAGTTCCACGCATGTGATCATGATCATCAAGAGGGATGAAACGAAAGGGGTGGTGGGATGTGTCATAGAAGACGGCGCAGATGGGAGTGTTTGGGATTTGAAGGGTGTGGCGGTGACAGAATTTAGGGTCGGAAATAAGAGACAGCCAATGCTTGGAGACGCATTTGAAGCGGACCAGAGGTTTAGCTGGCACATGCACAAGGATTTAGGTAAGAAGTTCTTCGATGTCGGCTACGGTTTCTGCTATGCTGCTGGTGCGGCAACGTTTTGGGTGGAGTCTCTGCACCATCATGGACCTCTCTTTTTTTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
DUF2358

Protein Analysis

107

Amino Acids

11.93

Weight (kDa)

6.27

Isoelectric Point (pI)

31.55

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0013501)

Species Orthologous Gene IDs
arabidopsis_thaliana AT3G04890 AT3G04890 AT3G04890 AT3G04890
fragaria_vesca FvH4_6g03440
malus_domestica MD04G1220800.v1.1
prunus_persica Prupe.6G339800_v2.0.a1
rosa_chinensis RchiOBHm_Chr3g0451941
rosa_laevigata RLG00000025636
rosa_multiflora Rmu_sc0002901.1_g000001
rosa_roxburghii Rroxscaffold_164G00436170 Rroxscaffold_6G00429110
rosa_rugosa Rorug02G0637600
rosa_samantha Rh3AG039300 Rh3BG040600 Rh3CG039100 Rh3DG039800
rosa_wichuraiana Rw3G002940

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB7I CCANNNNNTGG 1 cut(s) 167
AciI CCGC 3 cut(s) 125, 185, 272
AclI AACGTT 1 cut(s) 278
AcsI RAATTY 1 cut(s) 134
AfaI GTAC 1 cut(s) 10
AfiI CCNNNNNNNGG 1 cut(s) 167
AgsI TTSAA 2 cut(s) 115, 182
AhlI ACTAGT 1 cut(s) 14
AleI CACNNNNGTG 1 cut(s) 26
AluBI AGCT 1 cut(s) 201
AluI AGCT 1 cut(s) 201
Alw26I GTCTC 3 cut(s) 148, 165, 297
ApeKI GCWGC 1 cut(s) 263
ApoI RAATTY 1 cut(s) 134
Asp700I GAANNNNTTC 1 cut(s) 233
AspLEI GCGC 1 cut(s) 92
AspS9I GGNCC 2 cut(s) 187, 308
AsuHPI GGTGA 1 cut(s) 139
AvaII GGWCC 2 cut(s) 187, 308
BbsI GAAGAC 1 cut(s) 90
BbvI GCAGC 1 cut(s) 250
BccI CCATC 2 cut(s) 89, 309
BceAI ACGGC 1 cut(s) 103
BclI TGATCA 2 cut(s) 30, 36
BcoDI GTCTC 3 cut(s) 148, 165, 297
BcuI ACTAGT 1 cut(s) 14
BfaI CTAG 1 cut(s) 15
BisI GCNGC 2 cut(s) 264, 273
BlsI GCNGC 2 cut(s) 265, 274
BmcAI AGTACT 1 cut(s) 10
Bme18I GGWCC 2 cut(s) 187, 308
BmgT120I GGNCC 2 cut(s) 187, 308
BpiI GAAGAC 1 cut(s) 90
BsaBI GATNNNNATC 1 cut(s) 35
Bsc4I CCNNNNNNNGG 1 cut(s) 167
Bse8I GATNNNNATC 1 cut(s) 35
BseGI GGATG 2 cut(s) 55, 77
BseJI GATNNNNATC 1 cut(s) 35
BseLI CCNNNNNNNGG 1 cut(s) 167
BseXI GCAGC 1 cut(s) 250
BsgI GTGCAG 1 cut(s) 281
BslI CCNNNNNNNGG 1 cut(s) 167
BsmAI GTCTC 3 cut(s) 148, 165, 297
BsmBI CGTCTC 1 cut(s) 165
Bsp143I GATC 2 cut(s) 30, 36
BspACI CCGC 3 cut(s) 125, 185, 272
BspHI TCATGA 1 cut(s) 33
BssMI GATC 2 cut(s) 30, 36
Bst4CI ACNGT 1 cut(s) 251
BstC8I GCNNGC 1 cut(s) 203
BstF5I GGATG 2 cut(s) 55, 77
BstHHI GCGC 1 cut(s) 92
BstKTI GATC 2 cut(s) 33, 39
BstMAI GTCTC 3 cut(s) 148, 165, 297
BstMBI GATC 2 cut(s) 30, 36
BstMWI GCNNNNNNNGC 3 cut(s) 182, 269, 272
BstNSI RCATGY 2 cut(s) 29, 211
BstV1I GCAGC 1 cut(s) 250
BstV2I GAAGAC 1 cut(s) 90
BtsCI GGATG 2 cut(s) 55, 77
Cac8I GCNNGC 1 cut(s) 203
CciI TCATGA 1 cut(s) 33
CfoI GCGC 1 cut(s) 92
Cfr13I GGNCC 2 cut(s) 187, 308
CseI GACGC 1 cut(s) 182
Csp6I GTAC 1 cut(s) 9
CviAII CATG 4 cut(s) 26, 34, 208, 305
CviJI RGCY 3 cut(s) 160, 201, 246
CviKI_1 RGCY 3 cut(s) 160, 201, 246
CviQI GTAC 1 cut(s) 9
DpnI GATC 2 cut(s) 32, 38
DpnII GATC 2 cut(s) 30, 36
Eco47I GGWCC 2 cut(s) 187, 308
Esp3I CGTCTC 1 cut(s) 165
FaeI CATG 4 cut(s) 29, 37, 211, 308
FaiI YATR 6 cut(s) 27, 35, 80, 209, 261, 306
FalI AAGNNNNNCTT 2 cut(s) 218, 250
FatI CATG 4 cut(s) 25, 33, 207, 304
FbaI TGATCA 2 cut(s) 30, 36
Fnu4HI GCNGC 2 cut(s) 264, 273
FokI GGATG 2 cut(s) 62, 84
Fsp4HI GCNGC 2 cut(s) 264, 273
FspBI CTAG 1 cut(s) 15
GlaI GCGC 1 cut(s) 91
GluI GCNGC 2 cut(s) 264, 273
HgaI GACGC 1 cut(s) 182
HhaI GCGC 1 cut(s) 92
Hin1II CATG 4 cut(s) 29, 37, 211, 308
Hin6I GCGC 1 cut(s) 90
HinP1I GCGC 1 cut(s) 90
HinfI GANTC 1 cut(s) 290
HphI GGTGA 1 cut(s) 139
Hpy188I TCNGA 1 cut(s) 146
Hpy188III TCNNGA 2 cut(s) 34, 43
HpyAV CCTTC 1 cut(s) 109
HpyCH4III ACNGT 1 cut(s) 251
HpyCH4IV ACGT 1 cut(s) 278
HpyCH4V TGCA 2 cut(s) 211, 298
HpyF10VI GCNNNNNNNGC 3 cut(s) 182, 269, 272
HpySE526I ACGT 1 cut(s) 278
Hsp92II CATG 4 cut(s) 29, 37, 211, 308
HspAI GCGC 1 cut(s) 90
Ksp22I TGATCA 2 cut(s) 30, 36
Kzo9I GATC 2 cut(s) 30, 36
LpnPI CCDG 3 cut(s) 187, 203, 252
Lsp1109I GCAGC 1 cut(s) 250
MaeI CTAG 1 cut(s) 15
MaeII ACGT 1 cut(s) 278
MaeIII GTNAC 1 cut(s) 127
MalI GATC 2 cut(s) 32, 38
MboI GATC 2 cut(s) 30, 36
MboII GAAGA 2 cut(s) 95, 226
MluCI AATT 1 cut(s) 134
MlyI GAGTC 1 cut(s) 299
MmeI TCCRAC 1 cut(s) 124
MnlI CCTC 3 cut(s) 39, 186, 321
MroXI GAANNNNTTC 1 cut(s) 233
MslI CAYNNNNRTG 2 cut(s) 26, 303
MwoI GCNNNNNNNGC 3 cut(s) 182, 269, 272
NdeII GATC 2 cut(s) 30, 36
NlaIII CATG 4 cut(s) 29, 37, 211, 308
NmuCI GTSAC 1 cut(s) 127
NspI RCATGY 2 cut(s) 29, 211
OliI CACNNNNGTG 1 cut(s) 26
PagI TCATGA 1 cut(s) 33
PdmI GAANNNNTTC 1 cut(s) 233
PflMI CCANNNNNTGG 1 cut(s) 167
PkrI GCNGC 2 cut(s) 265, 274
PleI GAGTC 1 cut(s) 298
PpsI GAGTC 1 cut(s) 298
Psp1406I AACGTT 1 cut(s) 278
PspPI GGNCC 2 cut(s) 187, 308
PsrI GAACNNNNNNTAC 1 cut(s) 33
RsaI GTAC 1 cut(s) 10
RsaNI GTAC 1 cut(s) 9
RseI CAYNNNNRTG 2 cut(s) 26, 303
SatI GCNGC 2 cut(s) 264, 273
Sau3AI GATC 2 cut(s) 30, 36
Sau96I GGNCC 2 cut(s) 187, 308
ScaI AGTACT 1 cut(s) 10
SchI GAGTC 1 cut(s) 299
SetI ASST 5 cut(s) 197, 203, 226, 281, 313
SinI GGWCC 2 cut(s) 187, 308
SmiMI CAYNNNNRTG 2 cut(s) 26, 303
SpeI ACTAGT 1 cut(s) 14
Sse9I AATT 1 cut(s) 134
SsiI CCGC 3 cut(s) 125, 185, 272
SspMI CTAG 1 cut(s) 15
TaaI ACNGT 1 cut(s) 251
TaiI ACGT 1 cut(s) 281
TaqI TCGA 1 cut(s) 237
TasI AATT 1 cut(s) 134
TatI WGTACW 1 cut(s) 8
TauI GCSGC 1 cut(s) 275
TseFI GTSAC 1 cut(s) 127
TseI GCWGC 1 cut(s) 263
Tsp45I GTSAC 1 cut(s) 127
TspDTI ATGAA 1 cut(s) 66
Van91I CCANNNNNTGG 1 cut(s) 167
VpaK11BI GGWCC 2 cut(s) 187, 308
XapI RAATTY 1 cut(s) 134
XceI RCATGY 2 cut(s) 29, 211
XmnI GAANNNNTTC 1 cut(s) 233
XspI CTAG 1 cut(s) 15
ZrmI AGTACT 1 cut(s) 10
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.