Prupe.6G339800_v2.0.a1

Uncharacterized conserved protein (DUF2358)

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
prunus_persica
Pp06
OG0013501
Physical Location & Seq
Reverse (-)
29393568 .. 29396899
3332 bp
Loading structure...
UTR
Exon/CDS
Intron
Prupe.6G339800.1

Sequence Viewer

Length: 678 bp
ATGGCGGGAGGATTGTGTTACAGTTGCACTGCAAGTGTACGGCTTCCTATGCTCTTGCAGTCCAAGACAATCCGTGGCACCCGATGCTCCTCAGCCGCACCGGATAACAACAATCACAAGAGAGACACCCCACAGGTTTTGAAAATCGCTGTGAGCGGCGTCACTGAGCTTCTCAGGCTTCTCTCTTCCTTCAACAAAACAACCAGACTGAATGGAGTGAGTGACAAAGGGAGAGATGAGTTTTCAGTTTCGGGCATTGATGAAGTTTTAATGATTCTCAAATCTGATTACGAGAATGCGTATTTTGTTACAGGGATTTTCACTTCTGCAATCTACGCTGAAGATTGTATCTTTGAAGATCCAACTATCAGATTTCGAGGTAAGGAGTTGTATTCTCGCAACTTGAAATTGCTTGTTCCTTTCTTTGAATCTCCATCAATTGGATTAGAAAAGATCGAGAAGGGTATCAATTCTGAAGCAAGTTTTGTGCTAGCAACATGGAAACTCAGGACCTACCTGAAACTTCCGTGGAGGCCTCTCATTAGCATTGATGGAAGCACGGTCTATGACTTAGATGATAAGTTTAAAATTGTAAGGCATGCTGAGAGTTGGAATGTCTCTGCAATTGAGGCAATTGGCCAGCTGTTCACGCCTAGTTATGGAAGGTCCAACGAATGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
DUF2358

Protein Analysis

226

Amino Acids

25.19

Weight (kDa)

8.28

Isoelectric Point (pI)

36.46

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
Loading...
Style Settings
Image
Tree File
Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0013501)

Species Orthologous Gene IDs
arabidopsis_thaliana AT3G04890 AT3G04890 AT3G04890 AT3G04890
fragaria_vesca FvH4_6g03440
malus_domestica MD04G1220800.v1.1
prunus_persica Prupe.6G339800_v2.0.a1
rosa_chinensis RchiOBHm_Chr3g0451941
rosa_laevigata RLG00000025636
rosa_multiflora Rmu_sc0002901.1_g000001
rosa_roxburghii Rroxscaffold_164G00436170 Rroxscaffold_6G00429110
rosa_rugosa Rorug02G0637600
rosa_samantha Rh3AG039300 Rh3BG040600 Rh3CG039100 Rh3DG039800
rosa_wichuraiana Rw3G002940

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB1I GGYRCC 1 cut(s) 77
AccB7I CCANNNNNTGG 1 cut(s) 440
AccBSI CCGCTC 1 cut(s) 156
AciI CCGC 3 cut(s) 5, 96, 156
AclWI GGATC 1 cut(s) 353
AcoI YGGCCR 1 cut(s) 637
AcuI CTGAAG 2 cut(s) 360, 495
AcyI GRCGYC 1 cut(s) 159
AfaI GTAC 1 cut(s) 39
AfiI CCNNNNNNNGG 2 cut(s) 440, 659
AgsI TTSAA 5 cut(s) 142, 193, 356, 406, 428
AluBI AGCT 2 cut(s) 169, 643
AluI AGCT 2 cut(s) 169, 643
Alw26I GTCTC 2 cut(s) 117, 622
AlwI GGATC 1 cut(s) 353
AoxI GGCC 2 cut(s) 533, 637
AspS9I GGNCC 2 cut(s) 510, 666
AsuNHI GCTAGC 1 cut(s) 490
AvaII GGWCC 2 cut(s) 510, 666
BalI TGGCCA 1 cut(s) 639
BanI GGYRCC 1 cut(s) 77
BbvCI CCTCAGC 1 cut(s) 91
BccI CCATC 2 cut(s) 442, 545
BceAI ACGGC 1 cut(s) 56
BcoDI GTCTC 2 cut(s) 117, 622
BfaI CTAG 2 cut(s) 491, 654
BisI GCNGC 2 cut(s) 96, 157
BlsI GCNGC 2 cut(s) 97, 158
Bme18I GGWCC 2 cut(s) 510, 666
BmgT120I GGNCC 2 cut(s) 510, 666
BmiI GGNNCC 1 cut(s) 79
BmsI GCATC 1 cut(s) 74
BmtI GCTAGC 1 cut(s) 494
Bpu10I CCTNAGC 1 cut(s) 91
BsaHI GRCGYC 1 cut(s) 159
BsaJI CCNNGG 2 cut(s) 73, 527
BsaWI WCCGGW 1 cut(s) 100
Bsc4I CCNNNNNNNGG 2 cut(s) 440, 659
BseDI CCNNGG 2 cut(s) 73, 527
BseLI CCNNNNNNNGG 2 cut(s) 440, 659
BseMII CTCAG 5 cut(s) 105, 156, 187, 520, 594
BseRI GAGGAG 1 cut(s) 79
BshFI GGCC 2 cut(s) 535, 639
BshNI GGYRCC 1 cut(s) 77
BsiSI CCGG 1 cut(s) 101
BslI CCNNNNNNNGG 2 cut(s) 440, 659
BsmAI GTCTC 2 cut(s) 117, 622
BsmI GAATGC 1 cut(s) 301
BsnI GGCC 2 cut(s) 535, 639
Bsp143I GATC 2 cut(s) 358, 453
BspACI CCGC 3 cut(s) 5, 96, 156
BspANI GGCC 2 cut(s) 535, 639
BspCNI CTCAG 5 cut(s) 104, 157, 186, 519, 595
BspLI GGNNCC 1 cut(s) 79
BspOI GCTAGC 1 cut(s) 494
BspPI GGATC 1 cut(s) 353
BspT107I GGYRCC 1 cut(s) 77
BsrBI CCGCTC 1 cut(s) 156
BssECI CCNNGG 2 cut(s) 73, 527
BssMI GATC 2 cut(s) 358, 453
BssNI GRCGYC 1 cut(s) 159
Bst4CI ACNGT 2 cut(s) 23, 562
Bst6I CTCTTC 1 cut(s) 190
BstACI GRCGYC 1 cut(s) 159
BstAPI GCANNNNNTGC 1 cut(s) 84
BstC8I GCNNGC 3 cut(s) 492, 600, 641
BstDEI CTNAG 6 cut(s) 91, 165, 173, 506, 571, 603
BstDSI CCRYGG 2 cut(s) 73, 527
BstKTI GATC 2 cut(s) 361, 456
BstMAI GTCTC 2 cut(s) 117, 622
BstMBI GATC 2 cut(s) 358, 453
BstMWI GCNNNNNNNGC 6 cut(s) 49, 84, 175, 335, 629, 649
BstNSI RCATGY 1 cut(s) 602
BstX2I RGATCY 1 cut(s) 358
BstYI RGATCY 1 cut(s) 358
BsuRI GGCC 2 cut(s) 535, 639
BtgI CCRYGG 2 cut(s) 73, 527
BtsI GCAGTG 1 cut(s) 27
BtsIMutI CAGTG 2 cut(s) 27, 162
Cac8I GCNNGC 3 cut(s) 492, 600, 641
Cfr13I GGNCC 2 cut(s) 510, 666
CseI GACGC 1 cut(s) 148
Csp6I GTAC 1 cut(s) 38
CspCI CAANNNNNGTGG 2 cut(s) 120, 155
CviAII CATG 2 cut(s) 498, 599
CviJI RGCY 7 cut(s) 43, 95, 169, 178, 535, 639, 643
CviKI_1 RGCY 7 cut(s) 43, 95, 169, 178, 535, 639, 643
CviQI GTAC 1 cut(s) 38
DdeI CTNAG 6 cut(s) 91, 165, 173, 506, 571, 603
DpnI GATC 2 cut(s) 360, 455
DpnII GATC 2 cut(s) 358, 453
DraI TTTAAA 1 cut(s) 586
EaeI YGGCCR 1 cut(s) 637
Eam1104I CTCTTC 1 cut(s) 190
EarI CTCTTC 1 cut(s) 190
Eco147I AGGCCT 1 cut(s) 535
Eco47I GGWCC 2 cut(s) 510, 666
Eco57I CTGAAG 2 cut(s) 360, 495
EcoO109I RGGNCCY 1 cut(s) 510
FaeI CATG 2 cut(s) 501, 602
FaiI YATR 5 cut(s) 50, 499, 567, 600, 660
FatI CATG 2 cut(s) 497, 598
Fnu4HI GCNGC 2 cut(s) 96, 157
Fsp4HI GCNGC 2 cut(s) 96, 157
FspBI CTAG 2 cut(s) 491, 654
GluI GCNGC 2 cut(s) 96, 157
HaeIII GGCC 2 cut(s) 535, 639
HapII CCGG 1 cut(s) 101
HgaI GACGC 1 cut(s) 148
Hin1I GRCGYC 1 cut(s) 159
Hin1II CATG 2 cut(s) 501, 602
HinfI GANTC 2 cut(s) 274, 428
HpaII CCGG 1 cut(s) 101
Hpy166II GTNNAC 2 cut(s) 38, 648
Hpy188I TCNGA 3 cut(s) 286, 371, 475
Hpy188III TCNNGA 2 cut(s) 457, 508
Hpy8I GTNNAC 2 cut(s) 38, 648
HpyAV CCTTC 3 cut(s) 199, 454, 657
HpyCH4III ACNGT 2 cut(s) 23, 562
HpyCH4V TGCA 5 cut(s) 27, 32, 58, 329, 623
HpyF10VI GCNNNNNNNGC 6 cut(s) 49, 84, 175, 335, 629, 649
HpyF3I CTNAG 6 cut(s) 91, 165, 173, 506, 571, 603
Hsp92I GRCGYC 1 cut(s) 159
Hsp92II CATG 2 cut(s) 501, 602
Kzo9I GATC 2 cut(s) 358, 453
LmnI GCTCC 1 cut(s) 92
LpnPI CCDG 8 cut(s) 114, 119, 160, 217, 297, 493, 530, 653
LweI GCATC 1 cut(s) 74
MaeI CTAG 2 cut(s) 491, 654
MaeIII GTNAC 4 cut(s) 17, 160, 221, 307
MalI GATC 2 cut(s) 360, 455
MbiI CCGCTC 1 cut(s) 156
MboI GATC 2 cut(s) 358, 453
MboII GAAGA 3 cut(s) 177, 353, 368
MfeI CAATTG 3 cut(s) 438, 624, 633
MflI RGATCY 1 cut(s) 358
MlsI TGGCCA 1 cut(s) 639
MluCI AATT 6 cut(s) 407, 438, 469, 588, 624, 633
MluNI TGGCCA 1 cut(s) 639
MmeI TCCRAC 2 cut(s) 386, 590
MnlI CCTC 5 cut(s) 100, 371, 525, 546, 622
Mox20I TGGCCA 1 cut(s) 639
MscI TGGCCA 1 cut(s) 639
MseI TTAA 2 cut(s) 269, 585
Msp20I TGGCCA 1 cut(s) 639
MspA1I CMGCKG 1 cut(s) 643
MspI CCGG 1 cut(s) 101
MunI CAATTG 3 cut(s) 438, 624, 633
Mva1269I GAATGC 1 cut(s) 301
MwoI GCNNNNNNNGC 6 cut(s) 49, 84, 175, 335, 629, 649
NdeII GATC 2 cut(s) 358, 453
NheI GCTAGC 1 cut(s) 490
NlaIII CATG 2 cut(s) 501, 602
NlaIV GGNNCC 1 cut(s) 79
NmuCI GTSAC 2 cut(s) 160, 221
NspI RCATGY 1 cut(s) 602
PaeI GCATGC 1 cut(s) 602
PceI AGGCCT 1 cut(s) 535
PctI GAATGC 1 cut(s) 301
PfeI GAWTC 2 cut(s) 274, 428
PflMI CCANNNNNTGG 1 cut(s) 440
PkrI GCNGC 2 cut(s) 97, 158
PpuMI RGGWCCY 1 cut(s) 510
Psp5II RGGWCCY 1 cut(s) 510
PspN4I GGNNCC 1 cut(s) 79
PspPI GGNCC 2 cut(s) 510, 666
PspPPI RGGWCCY 1 cut(s) 510
PsuI RGATCY 1 cut(s) 358
PvuII CAGCTG 1 cut(s) 643
RsaI GTAC 1 cut(s) 39
RsaNI GTAC 1 cut(s) 38
SaqAI TTAA 2 cut(s) 269, 585
SatI GCNGC 2 cut(s) 96, 157
Sau3AI GATC 2 cut(s) 358, 453
Sau96I GGNCC 2 cut(s) 510, 666
SetI ASST 7 cut(s) 138, 171, 382, 515, 519, 645, 668
SfaNI GCATC 1 cut(s) 74
SinI GGWCC 2 cut(s) 510, 666
SphI GCATGC 1 cut(s) 602
Sse9I AATT 6 cut(s) 407, 438, 469, 588, 624, 633
SseBI AGGCCT 1 cut(s) 535
SsiI CCGC 3 cut(s) 5, 96, 156
SspMI CTAG 2 cut(s) 491, 654
StuI AGGCCT 1 cut(s) 535
TaaI ACNGT 2 cut(s) 23, 562
TaqI TCGA 2 cut(s) 376, 456
TasI AATT 6 cut(s) 407, 438, 469, 588, 624, 633
TauI GCSGC 2 cut(s) 98, 159
TfiI GAWTC 2 cut(s) 274, 428
Tru1I TTAA 2 cut(s) 269, 585
Tru9I TTAA 2 cut(s) 269, 585
TscAI CASTG 2 cut(s) 34, 169
TseFI GTSAC 2 cut(s) 160, 221
Tsp45I GTSAC 2 cut(s) 160, 221
TspDTI ATGAA 1 cut(s) 276
TspGWI ACGGA 2 cut(s) 62, 516
TspRI CASTG 2 cut(s) 34, 169
Van91I CCANNNNNTGG 1 cut(s) 440
VpaK11BI GGWCC 2 cut(s) 510, 666
XceI RCATGY 1 cut(s) 602
XspI CTAG 2 cut(s) 491, 654
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.