Rw3G002940

Uncharacterized conserved protein (DUF2358)

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_wichuraiana
Chr3
OG0013501
Physical Location & Seq
Forward (+)
2590782 .. 2593115
2334 bp
Loading structure...
UTR
Exon/CDS
Intron
Rw3G002940.1

Sequence Viewer

Length: 675 bp
ATGGCGGGAGTGTGCTGCTCTCTGAGACTACAGATTCCTCTGCTCTCACACCTCACGACAAACCATGGAATCCGGTGCTGCGCAAAAGCACCCGATAACAATCCCAAGAGAGAAAAAACTCCCCAGATATTGAAACTCGCAGTGACCGGAGTCACCGAGTTCCTCAGGCTTCTATCTCCGTTCAACACAACAACAACAACAACCAGACTGGATAAAGCGACTGATAAACAAAGGGATGAGTTTTCGAATGTGGGAATAGATGATGTTTTGATGATTCTCGAAGCGGATTACAAGAATGCGTATTTTGTGACAGGTATTTTCACCTCCGCAATCTATGCTGAAGACTGTATCTTTGAAGATCCAACTATTAGATTTCAAGGTACGGAGTTGTATGCTCGCAACTTGAAATTGCTTGTTCCTTTCTTTGACTCTCCATCAATTGGATTGGAGAAGATCGAGAAGGTTATTGATTCTGAAGCAAACTTTGTTCTAGCAACATGGAAACTAAGGACCTACCTGAAGCTCCCATGGAGGCCTTTGATTTCTATTGATGGAAGTACAGTCTATGACTTGGATGATAAGTTTAAAATTGTAAGGCATGCTGAGAGTTGGAATGTTTCTGCAATTGAGGCAGTTGGCCAGATATTCAGACCTTCTCAAAGGTCCGATGACTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
DUF2358

Protein Analysis

224

Amino Acids

25.35

Weight (kDa)

5.97

Isoelectric Point (pI)

36.16

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
DUF2358 PF10184 88 - 200 7.6e-23 Uncharacterized conserved protein (DUF2358)
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0013501)

Species Orthologous Gene IDs
arabidopsis_thaliana AT3G04890 AT3G04890 AT3G04890 AT3G04890
fragaria_vesca FvH4_6g03440
malus_domestica MD04G1220800.v1.1
prunus_persica Prupe.6G339800_v2.0.a1
rosa_chinensis RchiOBHm_Chr3g0451941
rosa_laevigata RLG00000025636
rosa_multiflora Rmu_sc0002901.1_g000001
rosa_roxburghii Rroxscaffold_164G00436170 Rroxscaffold_6G00429110
rosa_rugosa Rorug02G0637600
rosa_samantha Rh3AG039300 Rh3BG040600 Rh3CG039100 Rh3DG039800
rosa_wichuraiana Rw3G002940

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc16I TGCGCA 1 cut(s) 82
AccB7I CCANNNNNTGG 1 cut(s) 440
AciI CCGC 3 cut(s) 5, 284, 327
AclWI GGATC 1 cut(s) 353
AcoI YGGCCR 1 cut(s) 637
AcuI CTGAAG 3 cut(s) 360, 495, 539
AfaI GTAC 2 cut(s) 382, 559
AfiI CCNNNNNNNGG 1 cut(s) 440
AgsI TTSAA 5 cut(s) 133, 184, 356, 377, 406
AluBI AGCT 1 cut(s) 523
AluI AGCT 1 cut(s) 523
Alw26I GTCTC 1 cut(s) 19
AlwI GGATC 1 cut(s) 353
AoxI GGCC 2 cut(s) 533, 637
ApeKI GCWGC 2 cut(s) 15, 78
ArsI GACNNNNNNTTYG 2 cut(s) 335, 367
AspLEI GCGC 1 cut(s) 83
AspS9I GGNCC 2 cut(s) 510, 663
AsuHPI GGTGA 2 cut(s) 145, 313
AsuII TTCGAA 1 cut(s) 245
AvaII GGWCC 2 cut(s) 510, 663
AxyI CCTNAGG 1 cut(s) 164
BalI TGGCCA 1 cut(s) 639
BbsI GAAGAC 1 cut(s) 348
BbvI GCAGC 2 cut(s) 2, 65
BccI CCATC 2 cut(s) 442, 545
BcoDI GTCTC 1 cut(s) 19
BfaI CTAG 1 cut(s) 491
BfmI CTRYAG 1 cut(s) 29
BisI GCNGC 2 cut(s) 16, 79
BlsI GCNGC 2 cut(s) 17, 80
Bme18I GGWCC 2 cut(s) 510, 663
BmgT120I GGNCC 2 cut(s) 510, 663
BoxI GACNNNNGTC 1 cut(s) 149
BpiI GAAGAC 1 cut(s) 348
Bpu14I TTCGAA 1 cut(s) 245
BsaBI GATNNNNATC 1 cut(s) 99
BsaJI CCNNGG 2 cut(s) 64, 527
BsaWI WCCGGW 2 cut(s) 72, 146
Bsc4I CCNNNNNNNGG 1 cut(s) 440
Bse1I ACTGG 1 cut(s) 213
Bse21I CCTNAGG 1 cut(s) 164
Bse8I GATNNNNATC 1 cut(s) 99
BseDI CCNNGG 2 cut(s) 64, 527
BseGI GGATG 2 cut(s) 241, 580
BseJI GATNNNNATC 1 cut(s) 99
BseLI CCNNNNNNNGG 1 cut(s) 440
BseMII CTCAG 3 cut(s) 14, 178, 594
BseNI ACTGG 1 cut(s) 213
BseXI GCAGC 2 cut(s) 2, 65
BshFI GGCC 2 cut(s) 535, 639
BsiSI CCGG 2 cut(s) 73, 147
BslI CCNNNNNNNGG 1 cut(s) 440
BsmAI GTCTC 1 cut(s) 19
BsmI GAATGC 1 cut(s) 301
BsnI GGCC 2 cut(s) 535, 639
Bsp119I TTCGAA 1 cut(s) 245
Bsp143I GATC 2 cut(s) 358, 453
Bsp19I CCATGG 2 cut(s) 64, 527
BspACI CCGC 3 cut(s) 5, 284, 327
BspANI GGCC 2 cut(s) 535, 639
BspCNI CTCAG 3 cut(s) 15, 177, 595
BspPI GGATC 1 cut(s) 353
BspT104I TTCGAA 1 cut(s) 245
BsrI ACTGG 1 cut(s) 213
BssECI CCNNGG 2 cut(s) 64, 527
BssMI GATC 2 cut(s) 358, 453
BssT1I CCWWGG 2 cut(s) 64, 527
Bst4CI ACNGT 2 cut(s) 347, 562
BstAPI GCANNNNNTGC 1 cut(s) 335
BstBI TTCGAA 1 cut(s) 245
BstC8I GCNNGC 2 cut(s) 397, 600
BstDEI CTNAG 4 cut(s) 23, 164, 506, 603
BstDSI CCRYGG 2 cut(s) 64, 527
BstF5I GGATG 2 cut(s) 241, 580
BstHHI GCGC 1 cut(s) 83
BstKTI GATC 2 cut(s) 361, 456
BstMAI GTCTC 1 cut(s) 19
BstMBI GATC 2 cut(s) 358, 453
BstMWI GCNNNNNNNGC 2 cut(s) 335, 629
BstNSI RCATGY 1 cut(s) 602
BstPAI GACNNNNGTC 1 cut(s) 149
BstSFI CTRYAG 1 cut(s) 29
BstV1I GCAGC 2 cut(s) 2, 65
BstV2I GAAGAC 1 cut(s) 348
BstX2I RGATCY 1 cut(s) 358
BstYI RGATCY 1 cut(s) 358
Bsu36I CCTNAGG 1 cut(s) 164
BsuRI GGCC 2 cut(s) 535, 639
BtgI CCRYGG 2 cut(s) 64, 527
BtsCI GGATG 2 cut(s) 241, 580
BtsI GCAGTG 1 cut(s) 147
BtsIMutI CAGTG 1 cut(s) 147
Cac8I GCNNGC 2 cut(s) 397, 600
CfoI GCGC 1 cut(s) 83
Cfr13I GGNCC 2 cut(s) 510, 663
Csp6I GTAC 2 cut(s) 381, 558
CviAII CATG 4 cut(s) 65, 498, 528, 599
CviJI RGCY 4 cut(s) 169, 523, 535, 639
CviKI_1 RGCY 4 cut(s) 169, 523, 535, 639
CviQI GTAC 2 cut(s) 381, 558
DdeI CTNAG 4 cut(s) 23, 164, 506, 603
DpnI GATC 2 cut(s) 360, 455
DpnII GATC 2 cut(s) 358, 453
DraI TTTAAA 1 cut(s) 586
EaeI YGGCCR 1 cut(s) 637
Eco130I CCWWGG 2 cut(s) 64, 527
Eco147I AGGCCT 1 cut(s) 535
Eco47I GGWCC 2 cut(s) 510, 663
Eco57I CTGAAG 3 cut(s) 360, 495, 539
Eco81I CCTNAGG 1 cut(s) 164
EcoO109I RGGNCCY 1 cut(s) 510
EcoT14I CCWWGG 2 cut(s) 64, 527
ErhI CCWWGG 2 cut(s) 64, 527
FaeI CATG 4 cut(s) 68, 501, 531, 602
FaiI YATR 7 cut(s) 66, 336, 393, 499, 529, 567, 600
FatI CATG 4 cut(s) 64, 497, 527, 598
Fnu4HI GCNGC 2 cut(s) 16, 79
FokI GGATG 2 cut(s) 248, 587
Fsp4HI GCNGC 2 cut(s) 16, 79
FspBI CTAG 1 cut(s) 491
FspI TGCGCA 1 cut(s) 82
GlaI GCGC 1 cut(s) 82
GluI GCNGC 2 cut(s) 16, 79
HaeIII GGCC 2 cut(s) 535, 639
HapII CCGG 2 cut(s) 73, 147
HhaI GCGC 1 cut(s) 83
Hin1II CATG 4 cut(s) 68, 501, 531, 602
Hin6I GCGC 1 cut(s) 81
HinP1I GCGC 1 cut(s) 81
HinfI GANTC 6 cut(s) 34, 69, 150, 274, 428, 470
HpaII CCGG 2 cut(s) 73, 147
HphI GGTGA 2 cut(s) 145, 313
Hpy188I TCNGA 4 cut(s) 24, 475, 650, 667
Hpy188III TCNNGA 3 cut(s) 55, 278, 457
HpyAV CCTTC 2 cut(s) 454, 663
HpyCH4III ACNGT 2 cut(s) 347, 562
HpyCH4V TGCA 1 cut(s) 623
HpyF10VI GCNNNNNNNGC 2 cut(s) 335, 629
HpyF3I CTNAG 4 cut(s) 23, 164, 506, 603
Hsp92II CATG 4 cut(s) 68, 501, 531, 602
HspAI GCGC 1 cut(s) 81
Kzo9I GATC 2 cut(s) 358, 453
LmnI GCTCC 1 cut(s) 528
LpnPI CCDG 9 cut(s) 86, 137, 151, 160, 194, 217, 297, 530, 653
Lsp1109I GCAGC 2 cut(s) 2, 65
MaeI CTAG 1 cut(s) 491
MaeIII GTNAC 3 cut(s) 142, 151, 307
MalI GATC 2 cut(s) 360, 455
MboI GATC 2 cut(s) 358, 453
MboII GAAGA 3 cut(s) 353, 368, 463
MfeI CAATTG 2 cut(s) 438, 624
MflI RGATCY 1 cut(s) 358
MlsI TGGCCA 1 cut(s) 639
MluCI AATT 4 cut(s) 407, 438, 588, 624
MluNI TGGCCA 1 cut(s) 639
MlyI GAGTC 2 cut(s) 159, 422
MmeI TCCRAC 2 cut(s) 386, 590
MnlI CCTC 6 cut(s) 48, 62, 173, 334, 525, 622
Mox20I TGGCCA 1 cut(s) 639
MscI TGGCCA 1 cut(s) 639
MseI TTAA 1 cut(s) 585
Msp20I TGGCCA 1 cut(s) 639
MspI CCGG 2 cut(s) 73, 147
MunI CAATTG 2 cut(s) 438, 624
Mva1269I GAATGC 1 cut(s) 301
MwoI GCNNNNNNNGC 2 cut(s) 335, 629
NcoI CCATGG 2 cut(s) 64, 527
NdeII GATC 2 cut(s) 358, 453
NlaIII CATG 4 cut(s) 68, 501, 531, 602
NmuCI GTSAC 3 cut(s) 142, 151, 307
NsbI TGCGCA 1 cut(s) 82
NspI RCATGY 1 cut(s) 602
NspV TTCGAA 1 cut(s) 245
PaeI GCATGC 1 cut(s) 602
PceI AGGCCT 1 cut(s) 535
PctI GAATGC 1 cut(s) 301
PfeI GAWTC 4 cut(s) 34, 69, 274, 470
PflMI CCANNNNNTGG 1 cut(s) 440
PkrI GCNGC 2 cut(s) 17, 80
PleI GAGTC 2 cut(s) 158, 422
PpsI GAGTC 2 cut(s) 158, 422
PpuMI RGGWCCY 1 cut(s) 510
PshAI GACNNNNGTC 1 cut(s) 149
Psp5II RGGWCCY 1 cut(s) 510
PspPI GGNCC 2 cut(s) 510, 663
PspPPI RGGWCCY 1 cut(s) 510
PsuI RGATCY 1 cut(s) 358
RsaI GTAC 2 cut(s) 382, 559
RsaNI GTAC 2 cut(s) 381, 558
SaqAI TTAA 1 cut(s) 585
SatI GCNGC 2 cut(s) 16, 79
Sau3AI GATC 2 cut(s) 358, 453
Sau96I GGNCC 2 cut(s) 510, 663
SchI GAGTC 2 cut(s) 159, 422
SfcI CTRYAG 1 cut(s) 29
SfuI TTCGAA 1 cut(s) 245
SinI GGWCC 2 cut(s) 510, 663
SphI GCATGC 1 cut(s) 602
Sse9I AATT 4 cut(s) 407, 438, 588, 624
SseBI AGGCCT 1 cut(s) 535
SsiI CCGC 3 cut(s) 5, 284, 327
SspMI CTAG 1 cut(s) 491
StuI AGGCCT 1 cut(s) 535
StyI CCWWGG 2 cut(s) 64, 527
TaaI ACNGT 2 cut(s) 347, 562
TaqI TCGA 3 cut(s) 245, 279, 456
TasI AATT 4 cut(s) 407, 438, 588, 624
TatI WGTACW 1 cut(s) 557
TfiI GAWTC 4 cut(s) 34, 69, 274, 470
Tru1I TTAA 1 cut(s) 585
Tru9I TTAA 1 cut(s) 585
TscAI CASTG 1 cut(s) 147
TseFI GTSAC 3 cut(s) 142, 151, 307
TseI GCWGC 2 cut(s) 15, 78
Tsp45I GTSAC 3 cut(s) 142, 151, 307
TspGWI ACGGA 2 cut(s) 168, 398
TspRI CASTG 1 cut(s) 147
Van91I CCANNNNNTGG 1 cut(s) 440
VpaK11BI GGWCC 2 cut(s) 510, 663
XceI RCATGY 1 cut(s) 602
XspI CTAG 1 cut(s) 491
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.