Rh3CG039100

Uncharacterized conserved protein (DUF2358)

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr3C
OG0013501
Physical Location & Seq
Forward (+)
2611428 .. 2618863
7436 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh3CG039100.1

Sequence Viewer

Length: 726 bp
ATGCGTCTCTCCAACTGCATAACAGACTCGCGTGTAGTCGAACCCGCCAAAACAATGGCGGGAGTGTGCTGCTCTCTGAGACTACAGATTCCTCTGCTCTCACACCCCACGACAAACCATGGAATCCGGTGCTGCGCAAAAGCACCCGATAACAATCCCAAGAGAGAAAAAACTCCTCAGATATTGAAACTCGCAGTGACCGGAGTCACCGAGTTCCTCAGGCTTCTATCTCCGTTCAACACAACAACAACAACCAGATTGAATAAAGCGACTGATAAACAAAGGGATGAGTTTTCGAATGTGGGAATAGATGATGTTTTGATGATTCTCGAAGCGGATTACAAGAATGCGTATTTTGTGACAGGCATTTTCACCTCCGCAATCTATGCTGAAGATTGTATCTTTGAAGATCCAACTATTAGATTTCAAGGTACGGAGTTGTATGCTCGCAACTTGAAATTGCTTGTTCCTTTCTTTGACTCTCCATCAATTGGATTGGAAAAGATTGAGAAGGGTATTGATTCTGAAGCAAACTTTGTTCTAGCAACATGGAAACTAAGGACCTACCTGAAGCTCCCATGGAGGCCTTTGATTTCTATTGATGGAAGCACAGTCTATGACTTGGATGATAAGTTTAAAATTGTAAGGCATGCTGAGAGTTGGAATGTTTCTGCAATTGAGGCAGTTGGCCAGATATTCAGACCTTCTGGAAGGTCCGATGACTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
DUF2358

Protein Analysis

241

Amino Acids

27.12

Weight (kDa)

6.83

Isoelectric Point (pI)

37.14

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
DUF2358 PF10184 105 - 217 1.3e-22 Uncharacterized conserved protein (DUF2358)
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Orthologous Genes (Group: OG0013501)

Species Orthologous Gene IDs
arabidopsis_thaliana AT3G04890 AT3G04890 AT3G04890 AT3G04890
fragaria_vesca FvH4_6g03440
malus_domestica MD04G1220800.v1.1
prunus_persica Prupe.6G339800_v2.0.a1
rosa_chinensis RchiOBHm_Chr3g0451941
rosa_laevigata RLG00000025636
rosa_multiflora Rmu_sc0002901.1_g000001
rosa_roxburghii Rroxscaffold_164G00436170 Rroxscaffold_6G00429110
rosa_rugosa Rorug02G0637600
rosa_samantha Rh3AG039300 Rh3BG040600 Rh3CG039100 Rh3DG039800
rosa_wichuraiana Rw3G002940

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc16I TGCGCA 1 cut(s) 136
AccB7I CCANNNNNTGG 1 cut(s) 491
AccII CGCG 1 cut(s) 31
AciI CCGC 4 cut(s) 45, 59, 335, 378
AclWI GGATC 1 cut(s) 404
AcoI YGGCCR 1 cut(s) 688
AcuI CTGAAG 3 cut(s) 411, 546, 590
AfaI GTAC 1 cut(s) 433
AfiI CCNNNNNNNGG 1 cut(s) 491
AgsI TTSAA 6 cut(s) 187, 238, 262, 407, 428, 457
AluBI AGCT 1 cut(s) 574
AluI AGCT 1 cut(s) 574
Alw26I GTCTC 2 cut(s) 11, 73
AlwI GGATC 1 cut(s) 404
AoxI GGCC 2 cut(s) 584, 688
ApeKI GCWGC 2 cut(s) 69, 132
AspLEI GCGC 1 cut(s) 137
AspS9I GGNCC 2 cut(s) 561, 714
AsuHPI GGTGA 2 cut(s) 199, 364
AsuII TTCGAA 1 cut(s) 296
AvaII GGWCC 2 cut(s) 561, 714
AxyI CCTNAGG 1 cut(s) 218
BalI TGGCCA 1 cut(s) 690
BbvI GCAGC 2 cut(s) 56, 119
BccI CCATC 2 cut(s) 493, 596
BcoDI GTCTC 2 cut(s) 11, 73
BfaI CTAG 1 cut(s) 542
BfmI CTRYAG 1 cut(s) 83
BisI GCNGC 2 cut(s) 70, 133
BlsI GCNGC 2 cut(s) 71, 134
Bme18I GGWCC 2 cut(s) 561, 714
BmgT120I GGNCC 2 cut(s) 561, 714
BoxI GACNNNNGTC 1 cut(s) 203
Bpu14I TTCGAA 1 cut(s) 296
BsaBI GATNNNNATC 1 cut(s) 153
BsaJI CCNNGG 2 cut(s) 118, 578
BsaWI WCCGGW 2 cut(s) 126, 200
Bsc4I CCNNNNNNNGG 1 cut(s) 491
Bse21I CCTNAGG 1 cut(s) 218
Bse8I GATNNNNATC 1 cut(s) 153
BseDI CCNNGG 2 cut(s) 118, 578
BseGI GGATG 2 cut(s) 292, 631
BseJI GATNNNNATC 1 cut(s) 153
BseLI CCNNNNNNNGG 1 cut(s) 491
BseMII CTCAG 4 cut(s) 68, 191, 232, 645
BseRI GAGGAG 1 cut(s) 165
BseXI GCAGC 2 cut(s) 56, 119
Bsh1236I CGCG 1 cut(s) 31
BshFI GGCC 2 cut(s) 586, 690
BsiSI CCGG 2 cut(s) 127, 201
BslI CCNNNNNNNGG 1 cut(s) 491
BsmAI GTCTC 2 cut(s) 11, 73
BsmBI CGTCTC 1 cut(s) 11
BsmI GAATGC 1 cut(s) 352
BsnI GGCC 2 cut(s) 586, 690
Bsp119I TTCGAA 1 cut(s) 296
Bsp143I GATC 1 cut(s) 409
Bsp19I CCATGG 2 cut(s) 118, 578
BspACI CCGC 4 cut(s) 45, 59, 335, 378
BspANI GGCC 2 cut(s) 586, 690
BspCNI CTCAG 4 cut(s) 69, 190, 231, 646
BspFNI CGCG 1 cut(s) 31
BspPI GGATC 1 cut(s) 404
BspT104I TTCGAA 1 cut(s) 296
BssECI CCNNGG 2 cut(s) 118, 578
BssMI GATC 1 cut(s) 409
BssT1I CCWWGG 2 cut(s) 118, 578
Bst4CI ACNGT 1 cut(s) 613
BstAPI GCANNNNNTGC 1 cut(s) 386
BstBI TTCGAA 1 cut(s) 296
BstC8I GCNNGC 2 cut(s) 448, 651
BstDEI CTNAG 5 cut(s) 77, 177, 218, 557, 654
BstDSI CCRYGG 2 cut(s) 118, 578
BstF5I GGATG 2 cut(s) 292, 631
BstFNI CGCG 1 cut(s) 31
BstHHI GCGC 1 cut(s) 137
BstKTI GATC 1 cut(s) 412
BstMAI GTCTC 2 cut(s) 11, 73
BstMBI GATC 1 cut(s) 409
BstMWI GCNNNNNNNGC 2 cut(s) 386, 680
BstNSI RCATGY 1 cut(s) 653
BstPAI GACNNNNGTC 1 cut(s) 203
BstSFI CTRYAG 1 cut(s) 83
BstUI CGCG 1 cut(s) 31
BstV1I GCAGC 2 cut(s) 56, 119
BstX2I RGATCY 1 cut(s) 409
BstXI CCANNNNNNTGG 1 cut(s) 55
BstYI RGATCY 1 cut(s) 409
Bsu36I CCTNAGG 1 cut(s) 218
BsuRI GGCC 2 cut(s) 586, 690
BtgI CCRYGG 2 cut(s) 118, 578
BtsCI GGATG 2 cut(s) 292, 631
BtsI GCAGTG 1 cut(s) 201
BtsIMutI CAGTG 1 cut(s) 201
Cac8I GCNNGC 2 cut(s) 448, 651
CfoI GCGC 1 cut(s) 137
Cfr13I GGNCC 2 cut(s) 561, 714
Csp6I GTAC 1 cut(s) 432
CviAII CATG 4 cut(s) 119, 549, 579, 650
CviJI RGCY 4 cut(s) 223, 574, 586, 690
CviKI_1 RGCY 4 cut(s) 223, 574, 586, 690
CviQI GTAC 1 cut(s) 432
DdeI CTNAG 5 cut(s) 77, 177, 218, 557, 654
DpnI GATC 1 cut(s) 411
DpnII GATC 1 cut(s) 409
DraI TTTAAA 1 cut(s) 637
EaeI YGGCCR 1 cut(s) 688
Eco130I CCWWGG 2 cut(s) 118, 578
Eco147I AGGCCT 1 cut(s) 586
Eco47I GGWCC 2 cut(s) 561, 714
Eco57I CTGAAG 3 cut(s) 411, 546, 590
Eco81I CCTNAGG 1 cut(s) 218
EcoO109I RGGNCCY 1 cut(s) 561
EcoT14I CCWWGG 2 cut(s) 118, 578
ErhI CCWWGG 2 cut(s) 118, 578
Esp3I CGTCTC 1 cut(s) 11
FaeI CATG 4 cut(s) 122, 552, 582, 653
FaiI YATR 8 cut(s) 20, 120, 387, 444, 550, 580, 618, 651
FatI CATG 4 cut(s) 118, 548, 578, 649
FauI CCCGC 2 cut(s) 52, 52
Fnu4HI GCNGC 2 cut(s) 70, 133
FokI GGATG 2 cut(s) 299, 638
Fsp4HI GCNGC 2 cut(s) 70, 133
FspBI CTAG 1 cut(s) 542
FspI TGCGCA 1 cut(s) 136
GlaI GCGC 1 cut(s) 136
GluI GCNGC 2 cut(s) 70, 133
HaeIII GGCC 2 cut(s) 586, 690
HapII CCGG 2 cut(s) 127, 201
HhaI GCGC 1 cut(s) 137
Hin1II CATG 4 cut(s) 122, 552, 582, 653
Hin6I GCGC 1 cut(s) 135
HinP1I GCGC 1 cut(s) 135
HinfI GANTC 7 cut(s) 26, 88, 123, 204, 325, 479, 521
HpaII CCGG 2 cut(s) 127, 201
HphI GGTGA 2 cut(s) 199, 364
Hpy188I TCNGA 5 cut(s) 78, 180, 526, 701, 718
Hpy188III TCNNGA 2 cut(s) 329, 708
HpyAV CCTTC 3 cut(s) 505, 705, 714
HpyCH4III ACNGT 1 cut(s) 613
HpyCH4V TGCA 2 cut(s) 18, 674
HpyF10VI GCNNNNNNNGC 2 cut(s) 386, 680
HpyF3I CTNAG 5 cut(s) 77, 177, 218, 557, 654
Hsp92II CATG 4 cut(s) 122, 552, 582, 653
HspAI GCGC 1 cut(s) 135
Kzo9I GATC 1 cut(s) 409
LmnI GCTCC 1 cut(s) 579
LpnPI CCDG 8 cut(s) 140, 205, 214, 268, 348, 581, 693, 704
Lsp1109I GCAGC 2 cut(s) 56, 119
MaeI CTAG 1 cut(s) 542
MaeIII GTNAC 3 cut(s) 196, 205, 358
MalI GATC 1 cut(s) 411
MboI GATC 1 cut(s) 409
MboII GAAGA 2 cut(s) 404, 419
MfeI CAATTG 2 cut(s) 489, 675
MflI RGATCY 1 cut(s) 409
MlsI TGGCCA 1 cut(s) 690
MluCI AATT 4 cut(s) 458, 489, 639, 675
MluNI TGGCCA 1 cut(s) 690
MlyI GAGTC 3 cut(s) 20, 213, 473
MmeI TCCRAC 3 cut(s) 36, 437, 641
MnlI CCTC 6 cut(s) 102, 186, 227, 385, 576, 673
Mox20I TGGCCA 1 cut(s) 690
MscI TGGCCA 1 cut(s) 690
MseI TTAA 1 cut(s) 636
Msp20I TGGCCA 1 cut(s) 690
MspI CCGG 2 cut(s) 127, 201
MunI CAATTG 2 cut(s) 489, 675
Mva1269I GAATGC 1 cut(s) 352
MvnI CGCG 1 cut(s) 31
MwoI GCNNNNNNNGC 2 cut(s) 386, 680
NcoI CCATGG 2 cut(s) 118, 578
NdeII GATC 1 cut(s) 409
NlaIII CATG 4 cut(s) 122, 552, 582, 653
NmuCI GTSAC 3 cut(s) 196, 205, 358
NsbI TGCGCA 1 cut(s) 136
NspI RCATGY 1 cut(s) 653
NspV TTCGAA 1 cut(s) 296
PaeI GCATGC 1 cut(s) 653
PceI AGGCCT 1 cut(s) 586
PctI GAATGC 1 cut(s) 352
PfeI GAWTC 4 cut(s) 88, 123, 325, 521
PflMI CCANNNNNTGG 1 cut(s) 491
PkrI GCNGC 2 cut(s) 71, 134
PleI GAGTC 3 cut(s) 20, 212, 473
PpsI GAGTC 3 cut(s) 20, 212, 473
PpuMI RGGWCCY 1 cut(s) 561
PshAI GACNNNNGTC 1 cut(s) 203
Psp5II RGGWCCY 1 cut(s) 561
PspPI GGNCC 2 cut(s) 561, 714
PspPPI RGGWCCY 1 cut(s) 561
PsuI RGATCY 1 cut(s) 409
RsaI GTAC 1 cut(s) 433
RsaNI GTAC 1 cut(s) 432
SaqAI TTAA 1 cut(s) 636
SatI GCNGC 2 cut(s) 70, 133
Sau3AI GATC 1 cut(s) 409
Sau96I GGNCC 2 cut(s) 561, 714
SchI GAGTC 3 cut(s) 20, 213, 473
SetI ASST 7 cut(s) 377, 433, 566, 570, 576, 706, 716
SfcI CTRYAG 1 cut(s) 83
SfuI TTCGAA 1 cut(s) 296
SinI GGWCC 2 cut(s) 561, 714
SphI GCATGC 1 cut(s) 653
Sse9I AATT 4 cut(s) 458, 489, 639, 675
SseBI AGGCCT 1 cut(s) 586
SsiI CCGC 4 cut(s) 45, 59, 335, 378
SspMI CTAG 1 cut(s) 542
StuI AGGCCT 1 cut(s) 586
StyI CCWWGG 2 cut(s) 118, 578
TaaI ACNGT 1 cut(s) 613
TaqI TCGA 3 cut(s) 39, 296, 330
TasI AATT 4 cut(s) 458, 489, 639, 675
TfiI GAWTC 4 cut(s) 88, 123, 325, 521
Tru1I TTAA 1 cut(s) 636
Tru9I TTAA 1 cut(s) 636
TscAI CASTG 1 cut(s) 201
TseFI GTSAC 3 cut(s) 196, 205, 358
TseI GCWGC 2 cut(s) 69, 132
Tsp45I GTSAC 3 cut(s) 196, 205, 358
TspGWI ACGGA 2 cut(s) 222, 449
TspRI CASTG 1 cut(s) 201
Van91I CCANNNNNTGG 1 cut(s) 491
VpaK11BI GGWCC 2 cut(s) 561, 714
XceI RCATGY 1 cut(s) 653
XspI CTAG 1 cut(s) 542
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.