Rroxscaffold_6G00429110

Uncharacterized conserved protein (DUF2358)

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_roxburghii
GWHEROQ00000006
OG0013501
Physical Location & Seq
Forward (+)
49459608 .. 49462063
2456 bp
Loading structure...
UTR
Exon/CDS
Intron
Rroxscaffold_6G00429110.1

Sequence Viewer

Length: 690 bp
ATGGCGGGAGTGTGCTGCTCTCTGAGACTACATATTCCTCTGCTCTCACACCCCACGACGAACCATGGAATCAGGTGCTGCGCAAAAGCACCCGATAACAATCCCAAAAGAGAAACTCCGCGGATATTGAAACTCGCAGTGTCCGGAGTCACTGAGTTCCTCAGGCTTCTATCTTCGTTCAACACAACAAGAACCACCAGATTGGATAAAGTGACTGACAAACAAAGGGATGAGTTTTCGGATGTGGGAATAGATGATGTTGTAATGATTCTTGAAGCGGATTACAAGAATGCGTATTTTGTGACGGTGATAGTTTCCATTGGAATAGGCATTTTCACCTCTGCAATCTATGCTGAAGACTGTATCTTTGAAGATCCAACTATTAGATTTCAAGGTACCGAGTTGTATGCTCGCAACTTGAAATTGCTTGTTCCTTTCTTTGACTCTCCATCAATTGGATTGGAAAAGATCGAGAAGGGTATTGATTCTGAAGCAAACTTTGTTCTAGCAACATGGAAACTAAGGACCTACCTGAAGCTCCCATGGAGGCCTTTGATTTCTATTGATGGAAGTACAGTCTATGACTTGGATGATAAGTTTAAAGTTGTAAGGCATGCTGAGAGTTGGAATGTTTCTGCAATTGAGGCAGTTGGCCAGATATTCAGACCTTCTGGAAGGTCCGATGACTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
DUF2358

Protein Analysis

229

Amino Acids

25.75

Weight (kDa)

6.12

Isoelectric Point (pI)

31.66

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
DUF2358 PF10184 113 - 205 1.5e-19 Uncharacterized conserved protein (DUF2358)
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0013501)

Species Orthologous Gene IDs
arabidopsis_thaliana AT3G04890 AT3G04890 AT3G04890 AT3G04890
fragaria_vesca FvH4_6g03440
malus_domestica MD04G1220800.v1.1
prunus_persica Prupe.6G339800_v2.0.a1
rosa_chinensis RchiOBHm_Chr3g0451941
rosa_laevigata RLG00000025636
rosa_multiflora Rmu_sc0002901.1_g000001
rosa_roxburghii Rroxscaffold_164G00436170 Rroxscaffold_6G00429110
rosa_rugosa Rorug02G0637600
rosa_samantha Rh3AG039300 Rh3BG040600 Rh3CG039100 Rh3DG039800
rosa_wichuraiana Rw3G002940

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc16I TGCGCA 1 cut(s) 82
Acc65I GGTACC 1 cut(s) 395
AccB1I GGYRCC 1 cut(s) 395
AccB7I CCANNNNNTGG 1 cut(s) 455
AccII CGCG 1 cut(s) 121
AccIII TCCGGA 1 cut(s) 143
AciI CCGC 4 cut(s) 5, 119, 121, 278
AclWI GGATC 1 cut(s) 368
AcoI YGGCCR 1 cut(s) 652
AcuI CTGAAG 3 cut(s) 375, 510, 554
AfaI GTAC 2 cut(s) 397, 574
AfiI CCNNNNNNNGG 1 cut(s) 455
AgsI TTSAA 6 cut(s) 130, 181, 275, 371, 392, 421
AluBI AGCT 1 cut(s) 538
AluI AGCT 1 cut(s) 538
Alw26I GTCTC 1 cut(s) 19
AlwI GGATC 1 cut(s) 368
AlwNI CAGNNNCTG 1 cut(s) 78
Aor13HI TCCGGA 1 cut(s) 143
AoxI GGCC 2 cut(s) 548, 652
ApeKI GCWGC 2 cut(s) 15, 78
ArsI GACNNNNNNTTYG 2 cut(s) 350, 382
Asp718I GGTACC 1 cut(s) 395
AspLEI GCGC 1 cut(s) 83
AspS9I GGNCC 2 cut(s) 525, 678
AsuHPI GGTGA 2 cut(s) 319, 328
AvaII GGWCC 2 cut(s) 525, 678
AxyI CCTNAGG 1 cut(s) 161
BalI TGGCCA 1 cut(s) 654
BanI GGYRCC 1 cut(s) 395
BbsI GAAGAC 1 cut(s) 363
BbvI GCAGC 2 cut(s) 2, 65
BccI CCATC 2 cut(s) 457, 560
BcgI CGANNNNNNTGC 2 cut(s) 389, 423
BcoDI GTCTC 1 cut(s) 19
BfaI CTAG 1 cut(s) 506
BisI GCNGC 2 cut(s) 16, 79
BlsI GCNGC 2 cut(s) 17, 80
Bme18I GGWCC 2 cut(s) 525, 678
BmgT120I GGNCC 2 cut(s) 525, 678
BmiI GGNNCC 1 cut(s) 397
BpiI GAAGAC 1 cut(s) 363
BsaBI GATNNNNATC 1 cut(s) 99
BsaJI CCNNGG 3 cut(s) 64, 119, 542
BsaWI WCCGGW 1 cut(s) 143
Bsc4I CCNNNNNNNGG 1 cut(s) 455
Bse21I CCTNAGG 1 cut(s) 161
Bse8I GATNNNNATC 1 cut(s) 99
BseAI TCCGGA 1 cut(s) 143
BseDI CCNNGG 3 cut(s) 64, 119, 542
BseGI GGATG 3 cut(s) 235, 247, 595
BseJI GATNNNNATC 1 cut(s) 99
BseLI CCNNNNNNNGG 1 cut(s) 455
BseMII CTCAG 4 cut(s) 14, 144, 175, 609
BseXI GCAGC 2 cut(s) 2, 65
Bsh1236I CGCG 1 cut(s) 121
BshFI GGCC 2 cut(s) 550, 654
BshNI GGYRCC 1 cut(s) 395
BsiSI CCGG 1 cut(s) 144
BslI CCNNNNNNNGG 1 cut(s) 455
BsmAI GTCTC 1 cut(s) 19
BsmI GAATGC 1 cut(s) 295
BsnI GGCC 2 cut(s) 550, 654
Bsp13I TCCGGA 1 cut(s) 143
Bsp143I GATC 2 cut(s) 373, 468
Bsp19I CCATGG 2 cut(s) 64, 542
BspACI CCGC 4 cut(s) 5, 119, 121, 278
BspANI GGCC 2 cut(s) 550, 654
BspCNI CTCAG 4 cut(s) 15, 145, 174, 610
BspEI TCCGGA 1 cut(s) 143
BspFNI CGCG 1 cut(s) 121
BspLI GGNNCC 1 cut(s) 397
BspPI GGATC 1 cut(s) 368
BspT107I GGYRCC 1 cut(s) 395
BssECI CCNNGG 3 cut(s) 64, 119, 542
BssMI GATC 2 cut(s) 373, 468
BssT1I CCWWGG 2 cut(s) 64, 542
Bst4CI ACNGT 3 cut(s) 307, 362, 577
BstAPI GCANNNNNTGC 1 cut(s) 350
BstC8I GCNNGC 2 cut(s) 412, 615
BstDEI CTNAG 5 cut(s) 23, 153, 161, 521, 618
BstDSI CCRYGG 3 cut(s) 64, 119, 542
BstF5I GGATG 3 cut(s) 235, 247, 595
BstFNI CGCG 1 cut(s) 121
BstHHI GCGC 1 cut(s) 83
BstKTI GATC 2 cut(s) 376, 471
BstMAI GTCTC 1 cut(s) 19
BstMBI GATC 2 cut(s) 373, 468
BstMWI GCNNNNNNNGC 2 cut(s) 350, 644
BstNSI RCATGY 1 cut(s) 617
BstUI CGCG 1 cut(s) 121
BstV1I GCAGC 2 cut(s) 2, 65
BstV2I GAAGAC 1 cut(s) 363
BstX2I RGATCY 1 cut(s) 373
BstXI CCANNNNNNTGG 1 cut(s) 202
BstYI RGATCY 1 cut(s) 373
Bsu36I CCTNAGG 1 cut(s) 161
BsuRI GGCC 2 cut(s) 550, 654
BtgI CCRYGG 3 cut(s) 64, 119, 542
BtsCI GGATG 3 cut(s) 235, 247, 595
BtsI GCAGTG 1 cut(s) 144
BtsIMutI CAGTG 2 cut(s) 144, 150
Cac8I GCNNGC 2 cut(s) 412, 615
CaiI CAGNNNCTG 1 cut(s) 78
CfoI GCGC 1 cut(s) 83
Cfr13I GGNCC 2 cut(s) 525, 678
Cfr42I CCGCGG 1 cut(s) 122
Csp6I GTAC 2 cut(s) 396, 573
CviAII CATG 4 cut(s) 65, 513, 543, 614
CviJI RGCY 4 cut(s) 166, 538, 550, 654
CviKI_1 RGCY 4 cut(s) 166, 538, 550, 654
CviQI GTAC 2 cut(s) 396, 573
DdeI CTNAG 5 cut(s) 23, 153, 161, 521, 618
DpnI GATC 2 cut(s) 375, 470
DpnII GATC 2 cut(s) 373, 468
DraI TTTAAA 1 cut(s) 601
EaeI YGGCCR 1 cut(s) 652
Eco130I CCWWGG 2 cut(s) 64, 542
Eco147I AGGCCT 1 cut(s) 550
Eco47I GGWCC 2 cut(s) 525, 678
Eco57I CTGAAG 3 cut(s) 375, 510, 554
Eco81I CCTNAGG 1 cut(s) 161
EcoO109I RGGNCCY 1 cut(s) 525
EcoT14I CCWWGG 2 cut(s) 64, 542
ErhI CCWWGG 2 cut(s) 64, 542
FaeI CATG 4 cut(s) 68, 516, 546, 617
FaiI YATR 8 cut(s) 33, 66, 351, 408, 514, 544, 582, 615
FatI CATG 4 cut(s) 64, 512, 542, 613
Fnu4HI GCNGC 2 cut(s) 16, 79
FokI GGATG 3 cut(s) 242, 254, 602
Fsp4HI GCNGC 2 cut(s) 16, 79
FspBI CTAG 1 cut(s) 506
FspI TGCGCA 1 cut(s) 82
GlaI GCGC 1 cut(s) 82
GluI GCNGC 2 cut(s) 16, 79
HaeIII GGCC 2 cut(s) 550, 654
HapII CCGG 1 cut(s) 144
HhaI GCGC 1 cut(s) 83
Hin1II CATG 4 cut(s) 68, 516, 546, 617
Hin6I GCGC 1 cut(s) 81
HinP1I GCGC 1 cut(s) 81
HinfI GANTC 5 cut(s) 69, 147, 268, 443, 485
HpaII CCGG 1 cut(s) 144
HphI GGTGA 2 cut(s) 319, 328
Hpy188I TCNGA 5 cut(s) 24, 241, 490, 665, 682
Hpy188III TCNNGA 4 cut(s) 144, 272, 472, 672
Hpy99I CGWCG 1 cut(s) 61
HpyAV CCTTC 3 cut(s) 469, 669, 678
HpyCH4III ACNGT 3 cut(s) 307, 362, 577
HpyCH4V TGCA 2 cut(s) 344, 638
HpyF10VI GCNNNNNNNGC 2 cut(s) 350, 644
HpyF3I CTNAG 5 cut(s) 23, 153, 161, 521, 618
Hsp92II CATG 4 cut(s) 68, 516, 546, 617
HspAI GCGC 1 cut(s) 81
Kpn2I TCCGGA 1 cut(s) 143
KpnI GGTACC 1 cut(s) 399
KspI CCGCGG 1 cut(s) 122
Kzo9I GATC 2 cut(s) 373, 468
LmnI GCTCC 1 cut(s) 543
LpnPI CCDG 7 cut(s) 58, 148, 157, 211, 545, 657, 668
Lsp1109I GCAGC 2 cut(s) 2, 65
MaeI CTAG 1 cut(s) 506
MaeIII GTNAC 3 cut(s) 148, 211, 301
MalI GATC 2 cut(s) 375, 470
MboI GATC 2 cut(s) 373, 468
MboII GAAGA 3 cut(s) 165, 368, 383
MfeI CAATTG 2 cut(s) 453, 639
MflI RGATCY 1 cut(s) 373
MlsI TGGCCA 1 cut(s) 654
MluCI AATT 3 cut(s) 422, 453, 639
MluNI TGGCCA 1 cut(s) 654
MlyI GAGTC 2 cut(s) 156, 437
MmeI TCCRAC 2 cut(s) 401, 605
MnlI CCTC 5 cut(s) 48, 170, 349, 540, 637
Mox20I TGGCCA 1 cut(s) 654
MroI TCCGGA 1 cut(s) 143
MscI TGGCCA 1 cut(s) 654
MseI TTAA 1 cut(s) 600
Msp20I TGGCCA 1 cut(s) 654
MspA1I CMGCKG 1 cut(s) 121
MspI CCGG 1 cut(s) 144
MunI CAATTG 2 cut(s) 453, 639
Mva1269I GAATGC 1 cut(s) 295
MvnI CGCG 1 cut(s) 121
MwoI GCNNNNNNNGC 2 cut(s) 350, 644
NcoI CCATGG 2 cut(s) 64, 542
NdeII GATC 2 cut(s) 373, 468
NlaIII CATG 4 cut(s) 68, 516, 546, 617
NlaIV GGNNCC 1 cut(s) 397
NmuCI GTSAC 3 cut(s) 148, 211, 301
NsbI TGCGCA 1 cut(s) 82
NspI RCATGY 1 cut(s) 617
PaeI GCATGC 1 cut(s) 617
PceI AGGCCT 1 cut(s) 550
PctI GAATGC 1 cut(s) 295
PfeI GAWTC 3 cut(s) 69, 268, 485
PflMI CCANNNNNTGG 1 cut(s) 455
PkrI GCNGC 2 cut(s) 17, 80
PleI GAGTC 2 cut(s) 155, 437
PpsI GAGTC 2 cut(s) 155, 437
PpuMI RGGWCCY 1 cut(s) 525
Psp5II RGGWCCY 1 cut(s) 525
PspN4I GGNNCC 1 cut(s) 397
PspPI GGNCC 2 cut(s) 525, 678
PspPPI RGGWCCY 1 cut(s) 525
PstNI CAGNNNCTG 1 cut(s) 78
PsuI RGATCY 1 cut(s) 373
RsaI GTAC 2 cut(s) 397, 574
RsaNI GTAC 2 cut(s) 396, 573
SacII CCGCGG 1 cut(s) 122
SaqAI TTAA 1 cut(s) 600
SatI GCNGC 2 cut(s) 16, 79
Sau3AI GATC 2 cut(s) 373, 468
Sau96I GGNCC 2 cut(s) 525, 678
SchI GAGTC 2 cut(s) 156, 437
SetI ASST 8 cut(s) 77, 341, 397, 530, 534, 540, 670, 680
Sfr303I CCGCGG 1 cut(s) 122
SgrBI CCGCGG 1 cut(s) 122
SinI GGWCC 2 cut(s) 525, 678
SphI GCATGC 1 cut(s) 617
Sse9I AATT 3 cut(s) 422, 453, 639
SseBI AGGCCT 1 cut(s) 550
SsiI CCGC 4 cut(s) 5, 119, 121, 278
SspMI CTAG 1 cut(s) 506
StuI AGGCCT 1 cut(s) 550
StyI CCWWGG 2 cut(s) 64, 542
TaaI ACNGT 3 cut(s) 307, 362, 577
TaqI TCGA 1 cut(s) 471
TasI AATT 3 cut(s) 422, 453, 639
TatI WGTACW 1 cut(s) 572
TfiI GAWTC 3 cut(s) 69, 268, 485
Tru1I TTAA 1 cut(s) 600
Tru9I TTAA 1 cut(s) 600
TscAI CASTG 2 cut(s) 144, 157
TseFI GTSAC 3 cut(s) 148, 211, 301
TseI GCWGC 2 cut(s) 15, 78
Tsp45I GTSAC 3 cut(s) 148, 211, 301
TspRI CASTG 2 cut(s) 144, 157
Van91I CCANNNNNTGG 1 cut(s) 455
VpaK11BI GGWCC 2 cut(s) 525, 678
XceI RCATGY 1 cut(s) 617
XspI CTAG 1 cut(s) 506
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.