RchiOBHm_Chr3g0451941

Uncharacterized conserved protein (DUF2358)

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_chinensis
3
OG0013501
Physical Location & Seq
Forward (+)
2806865 .. 2812792
5928 bp
Loading structure...
UTR
Exon/CDS
Intron
PRQ41916

Sequence Viewer

Length: 789 bp
ATGCGTGCAACCCTGAAAATAACTAAACCCTGCGAATCTTTACCCCGAATTCAAACCCGACCCGACCGTCTGTCCAACCGCATAACAGACTCGCCTGTAGTCGAACCCGCCAAAACAATGGCGGGAGTGTGCTGCTCTCTGAGACTACAGATTCCTCTGCTCTCACTCCCCACGACAAACCATGGAATCCGGTGCTGCGCAAAAGCACCCGATAACAATCCCAAGAGAGAAGAAACTCCCCAGATATTGAAACTCGCAGTGACCGGAGTCACCGAGTTCCTCAGGCTTCTATCTCCGTTCAACACAACAACAACAACCAGATTGGATAAAGCGACTGATAAACGAAGGGATGAGTTTCCGGATGTGGGAATAGATGATGTTTTGATGATTCTCGAAGCGGATTACAAGAATGCGTATTTTGTGACAGGCATTTTCACCTCCGCAATCTATGCTGAAGACTGTATCTTTGAAGATCCAACTATTAGATTTCAAGGTACGGAGTTGTATGCTCGCAACTTGAAATTGCTTGTTCCTTTCTTTGACTCTCCATCAATTGGATTGGAAAAGATCAAGAAGGGTATTGATTCTGAAGCAAACTTTGTTCTAGCAACATGGAAACTAAGGACCTACCTGAAGCTCCCATGGAGGCCTTTGATTTCTATTGATGGAAGTACAGTCTATGACTTGGATGATAAGTTTAAAATTGTAAGGCATGCTGAGAGTTGGAATGTTTCTGCAATTGAGGCAGTTGGCCAGATATTCAGACCTTCTGGAAGGTCCGATGACTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
DUF2358

Protein Analysis

262

Amino Acids

29.54

Weight (kDa)

8.16

Isoelectric Point (pI)

38.71

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
DUF2358 PF10184 126 - 238 1.7e-22 Uncharacterized conserved protein (DUF2358)
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0013501)

Species Orthologous Gene IDs
arabidopsis_thaliana AT3G04890 AT3G04890 AT3G04890 AT3G04890
fragaria_vesca FvH4_6g03440
malus_domestica MD04G1220800.v1.1
prunus_persica Prupe.6G339800_v2.0.a1
rosa_chinensis RchiOBHm_Chr3g0451941
rosa_laevigata RLG00000025636
rosa_multiflora Rmu_sc0002901.1_g000001
rosa_roxburghii Rroxscaffold_164G00436170 Rroxscaffold_6G00429110
rosa_rugosa Rorug02G0637600
rosa_samantha Rh3AG039300 Rh3BG040600 Rh3CG039100 Rh3DG039800
rosa_wichuraiana Rw3G002940

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AasI GACNNNNNNGTC 1 cut(s) 66
Acc16I TGCGCA 1 cut(s) 199
AccB7I CCANNNNNTGG 1 cut(s) 554
AccIII TCCGGA 1 cut(s) 358
AciI CCGC 5 cut(s) 79, 108, 122, 398, 441
AclWI GGATC 1 cut(s) 467
AcoI YGGCCR 1 cut(s) 751
AcsI RAATTY 1 cut(s) 48
AcuI CTGAAG 3 cut(s) 474, 609, 653
AfaI GTAC 2 cut(s) 496, 673
AfiI CCNNNNNNNGG 2 cut(s) 365, 554
AgsI TTSAA 6 cut(s) 53, 250, 301, 470, 491, 520
AhdI GACNNNNNGTC 1 cut(s) 70
AluBI AGCT 1 cut(s) 637
AluI AGCT 1 cut(s) 637
Alw26I GTCTC 1 cut(s) 136
AlwI GGATC 1 cut(s) 467
Aor13HI TCCGGA 1 cut(s) 358
AoxI GGCC 2 cut(s) 647, 751
ApeKI GCWGC 2 cut(s) 132, 195
ApoI RAATTY 1 cut(s) 48
ArsI GACNNNNNNTTYG 2 cut(s) 449, 481
AspLEI GCGC 1 cut(s) 200
AspS9I GGNCC 2 cut(s) 624, 777
AsuHPI GGTGA 2 cut(s) 262, 427
AvaII GGWCC 2 cut(s) 624, 777
AxyI CCTNAGG 1 cut(s) 281
BalI TGGCCA 1 cut(s) 753
BbsI GAAGAC 1 cut(s) 462
BbvI GCAGC 2 cut(s) 119, 182
BccI CCATC 2 cut(s) 556, 659
BcoDI GTCTC 1 cut(s) 136
BfaI CTAG 1 cut(s) 605
BfmI CTRYAG 2 cut(s) 96, 146
BisI GCNGC 2 cut(s) 133, 196
BlsI GCNGC 2 cut(s) 134, 197
Bme18I GGWCC 2 cut(s) 624, 777
BmeRI GACNNNNNGTC 1 cut(s) 70
BmgT120I GGNCC 2 cut(s) 624, 777
BoxI GACNNNNGTC 1 cut(s) 266
BpiI GAAGAC 1 cut(s) 462
BsaBI GATNNNNATC 1 cut(s) 216
BsaJI CCNNGG 2 cut(s) 181, 641
BsaWI WCCGGW 3 cut(s) 189, 263, 358
Bsc4I CCNNNNNNNGG 2 cut(s) 365, 554
Bse21I CCTNAGG 1 cut(s) 281
Bse8I GATNNNNATC 1 cut(s) 216
BseAI TCCGGA 1 cut(s) 358
BseDI CCNNGG 2 cut(s) 181, 641
BseGI GGATG 3 cut(s) 355, 367, 694
BseJI GATNNNNATC 1 cut(s) 216
BseLI CCNNNNNNNGG 2 cut(s) 365, 554
BseMII CTCAG 3 cut(s) 131, 295, 708
BseXI GCAGC 2 cut(s) 119, 182
Bsh1285I CGRYCG 1 cut(s) 67
BshFI GGCC 2 cut(s) 649, 753
BsiEI CGRYCG 1 cut(s) 67
BsiSI CCGG 3 cut(s) 190, 264, 359
BslI CCNNNNNNNGG 2 cut(s) 365, 554
BsmAI GTCTC 1 cut(s) 136
BsmI GAATGC 1 cut(s) 415
BsnI GGCC 2 cut(s) 649, 753
Bsp13I TCCGGA 1 cut(s) 358
Bsp143I GATC 2 cut(s) 472, 567
Bsp19I CCATGG 2 cut(s) 181, 641
BspACI CCGC 5 cut(s) 79, 108, 122, 398, 441
BspANI GGCC 2 cut(s) 649, 753
BspCNI CTCAG 3 cut(s) 132, 294, 709
BspEI TCCGGA 1 cut(s) 358
BspPI GGATC 1 cut(s) 467
BssECI CCNNGG 2 cut(s) 181, 641
BssMI GATC 2 cut(s) 472, 567
BssT1I CCWWGG 2 cut(s) 181, 641
Bst4CI ACNGT 3 cut(s) 68, 461, 676
BstAPI GCANNNNNTGC 1 cut(s) 449
BstC8I GCNNGC 3 cut(s) 6, 511, 714
BstDEI CTNAG 4 cut(s) 140, 281, 620, 717
BstDSI CCRYGG 2 cut(s) 181, 641
BstF5I GGATG 3 cut(s) 355, 367, 694
BstHHI GCGC 1 cut(s) 200
BstKTI GATC 2 cut(s) 475, 570
BstMAI GTCTC 1 cut(s) 136
BstMBI GATC 2 cut(s) 472, 567
BstMCI CGRYCG 1 cut(s) 67
BstMWI GCNNNNNNNGC 2 cut(s) 449, 743
BstNSI RCATGY 1 cut(s) 716
BstPAI GACNNNNGTC 1 cut(s) 266
BstSFI CTRYAG 2 cut(s) 96, 146
BstV1I GCAGC 2 cut(s) 119, 182
BstV2I GAAGAC 1 cut(s) 462
BstX2I RGATCY 1 cut(s) 472
BstXI CCANNNNNNTGG 1 cut(s) 118
BstYI RGATCY 1 cut(s) 472
Bsu36I CCTNAGG 1 cut(s) 281
BsuRI GGCC 2 cut(s) 649, 753
BtgI CCRYGG 2 cut(s) 181, 641
BtsCI GGATG 3 cut(s) 355, 367, 694
BtsI GCAGTG 1 cut(s) 264
BtsIMutI CAGTG 1 cut(s) 264
Cac8I GCNNGC 3 cut(s) 6, 511, 714
CfoI GCGC 1 cut(s) 200
Cfr13I GGNCC 2 cut(s) 624, 777
Csp6I GTAC 2 cut(s) 495, 672
CviAII CATG 4 cut(s) 182, 612, 642, 713
CviJI RGCY 4 cut(s) 286, 637, 649, 753
CviKI_1 RGCY 4 cut(s) 286, 637, 649, 753
CviQI GTAC 2 cut(s) 495, 672
DdeI CTNAG 4 cut(s) 140, 281, 620, 717
DpnI GATC 2 cut(s) 474, 569
DpnII GATC 2 cut(s) 472, 567
DraI TTTAAA 1 cut(s) 700
DrdI GACNNNNNNGTC 1 cut(s) 66
DriI GACNNNNNGTC 1 cut(s) 70
DseDI GACNNNNNNGTC 1 cut(s) 66
EaeI YGGCCR 1 cut(s) 751
Eam1105I GACNNNNNGTC 1 cut(s) 70
Eco130I CCWWGG 2 cut(s) 181, 641
Eco147I AGGCCT 1 cut(s) 649
Eco47I GGWCC 2 cut(s) 624, 777
Eco57I CTGAAG 3 cut(s) 474, 609, 653
Eco81I CCTNAGG 1 cut(s) 281
EcoO109I RGGNCCY 1 cut(s) 624
EcoRI GAATTC 1 cut(s) 48
EcoT14I CCWWGG 2 cut(s) 181, 641
ErhI CCWWGG 2 cut(s) 181, 641
FaeI CATG 4 cut(s) 185, 615, 645, 716
FaiI YATR 8 cut(s) 83, 183, 450, 507, 613, 643, 681, 714
FatI CATG 4 cut(s) 181, 611, 641, 712
FauI CCCGC 2 cut(s) 115, 115
Fnu4HI GCNGC 2 cut(s) 133, 196
FokI GGATG 3 cut(s) 362, 374, 701
Fsp4HI GCNGC 2 cut(s) 133, 196
FspBI CTAG 1 cut(s) 605
FspI TGCGCA 1 cut(s) 199
GlaI GCGC 1 cut(s) 199
GluI GCNGC 2 cut(s) 133, 196
HaeIII GGCC 2 cut(s) 649, 753
HapII CCGG 3 cut(s) 190, 264, 359
HhaI GCGC 1 cut(s) 200
Hin1II CATG 4 cut(s) 185, 615, 645, 716
Hin6I GCGC 1 cut(s) 198
HinP1I GCGC 1 cut(s) 198
HinfI GANTC 8 cut(s) 35, 89, 151, 186, 267, 388, 542, 584
HpaII CCGG 3 cut(s) 190, 264, 359
HphI GGTGA 2 cut(s) 262, 427
Hpy188I TCNGA 4 cut(s) 141, 589, 764, 781
Hpy188III TCNNGA 4 cut(s) 359, 392, 571, 771
HpyAV CCTTC 4 cut(s) 339, 568, 768, 777
HpyCH4III ACNGT 3 cut(s) 68, 461, 676
HpyCH4V TGCA 2 cut(s) 8, 737
HpyF10VI GCNNNNNNNGC 2 cut(s) 449, 743
HpyF3I CTNAG 4 cut(s) 140, 281, 620, 717
Hsp92II CATG 4 cut(s) 185, 615, 645, 716
HspAI GCGC 1 cut(s) 198
Kpn2I TCCGGA 1 cut(s) 358
Kzo9I GATC 2 cut(s) 472, 567
LmnI GCTCC 1 cut(s) 642
Lsp1109I GCAGC 2 cut(s) 119, 182
MaeI CTAG 1 cut(s) 605
MaeIII GTNAC 3 cut(s) 259, 268, 421
MalI GATC 2 cut(s) 474, 569
MboI GATC 2 cut(s) 472, 567
MboII GAAGA 3 cut(s) 242, 467, 482
MfeI CAATTG 2 cut(s) 552, 738
MflI RGATCY 1 cut(s) 472
MlsI TGGCCA 1 cut(s) 753
MluCI AATT 5 cut(s) 48, 521, 552, 702, 738
MluNI TGGCCA 1 cut(s) 753
MlyI GAGTC 3 cut(s) 83, 276, 536
MmeI TCCRAC 3 cut(s) 99, 500, 704
MnlI CCTC 5 cut(s) 165, 290, 448, 639, 736
Mox20I TGGCCA 1 cut(s) 753
MroI TCCGGA 1 cut(s) 358
MscI TGGCCA 1 cut(s) 753
MseI TTAA 1 cut(s) 699
Msp20I TGGCCA 1 cut(s) 753
MspI CCGG 3 cut(s) 190, 264, 359
MunI CAATTG 2 cut(s) 552, 738
Mva1269I GAATGC 1 cut(s) 415
MwoI GCNNNNNNNGC 2 cut(s) 449, 743
NcoI CCATGG 2 cut(s) 181, 641
NdeII GATC 2 cut(s) 472, 567
NlaIII CATG 4 cut(s) 185, 615, 645, 716
NmuCI GTSAC 3 cut(s) 259, 268, 421
NsbI TGCGCA 1 cut(s) 199
NspI RCATGY 1 cut(s) 716
PaeI GCATGC 1 cut(s) 716
PceI AGGCCT 1 cut(s) 649
PctI GAATGC 1 cut(s) 415
PfeI GAWTC 5 cut(s) 35, 151, 186, 388, 584
PflMI CCANNNNNTGG 1 cut(s) 554
PkrI GCNGC 2 cut(s) 134, 197
PleI GAGTC 3 cut(s) 83, 275, 536
PpsI GAGTC 3 cut(s) 83, 275, 536
PpuMI RGGWCCY 1 cut(s) 624
PshAI GACNNNNGTC 1 cut(s) 266
Psp5II RGGWCCY 1 cut(s) 624
PspPI GGNCC 2 cut(s) 624, 777
PspPPI RGGWCCY 1 cut(s) 624
PsuI RGATCY 1 cut(s) 472
RsaI GTAC 2 cut(s) 496, 673
RsaNI GTAC 2 cut(s) 495, 672
SaqAI TTAA 1 cut(s) 699
SatI GCNGC 2 cut(s) 133, 196
Sau3AI GATC 2 cut(s) 472, 567
Sau96I GGNCC 2 cut(s) 624, 777
SchI GAGTC 3 cut(s) 83, 276, 536
SetI ASST 7 cut(s) 440, 496, 629, 633, 639, 769, 779
SfcI CTRYAG 2 cut(s) 96, 146
SinI GGWCC 2 cut(s) 624, 777
SphI GCATGC 1 cut(s) 716
Sse9I AATT 5 cut(s) 48, 521, 552, 702, 738
SseBI AGGCCT 1 cut(s) 649
SsiI CCGC 5 cut(s) 79, 108, 122, 398, 441
SspMI CTAG 1 cut(s) 605
StuI AGGCCT 1 cut(s) 649
StyI CCWWGG 2 cut(s) 181, 641
TaaI ACNGT 3 cut(s) 68, 461, 676
TaqI TCGA 2 cut(s) 102, 393
TasI AATT 5 cut(s) 48, 521, 552, 702, 738
TatI WGTACW 1 cut(s) 671
TfiI GAWTC 5 cut(s) 35, 151, 186, 388, 584
Tru1I TTAA 1 cut(s) 699
Tru9I TTAA 1 cut(s) 699
TscAI CASTG 1 cut(s) 264
TseFI GTSAC 3 cut(s) 259, 268, 421
TseI GCWGC 2 cut(s) 132, 195
Tsp45I GTSAC 3 cut(s) 259, 268, 421
TspGWI ACGGA 2 cut(s) 285, 512
TspRI CASTG 1 cut(s) 264
Van91I CCANNNNNTGG 1 cut(s) 554
VpaK11BI GGWCC 2 cut(s) 624, 777
XapI RAATTY 1 cut(s) 48
XceI RCATGY 1 cut(s) 716
XspI CTAG 1 cut(s) 605
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.