AT3G04970

Belongs to the DHHC palmitoyltransferase family

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
arabidopsis_thaliana
3
OG0006568
Physical Location & Seq
Forward (+)
1376154 .. 1378500
2347 bp
Loading structure...
UTR
Exon/CDS
Intron
AT3G04970.2

Sequence Viewer

Length: 1194 bp
ATGGCGGTACAGTGGCTTTTGGTGTGTCACGGGATGATGACGTTGACGGTGGTCATCTCCTTCCTCTGTGGTCAATGGCCAATCTTCAAAGGCACACCTTTTCAATGGATTCACTACTTCCTCACTTTCGGCGCCTACGATTACTTCCTGAGATTTGTCGGATTTGTGTTTGGTTCCAAGGGTACGGACGTGATTCTTTCTGTGGAGTATTTCTGCTGCGATCGTCCTAATCCGATTCTGCAAGTCATATATATAGCCATTATGGGATCAACCTACTTTTTGACTGCAAAATCTTCTTTCATCTATATACCTGGATATTATCTTGGCGATGTTCACAAGTACACAAGCTTTCTAGCTGTTATTGTTGGTGTCATACTTTTCTTATTAACATGCTTTTCTGATCCAGGTACTGTGAACGCTGAGAATGTTTCACGGTACATTTCTGCTTACCCCTATGATGATATCATTTACTCCAAGAAAGAATGTTCTACGTGTAAAATCCCAAAGCCTGCTAGATCCAAGCATTGCAGCATCTGCAACCGCTGTGTGGCTCGGTTTGATCATCATTGTGGGTGGATGAATAACTGTATAGGAGAAAGGAACACCAAATATTTCATGGCTTTCCTCTTGTGGCATTTCCTTCTTTGCTTGTACGGAACAGTTGCCATCGGATTTATTCTTGCTGGGCGAGTAAAAGAACTCCGTGTTGTACATATTTTAACTGTCTATTACGGTGTAGATAAATCTTTCCGAAGTTTAGCTCCTCGAGTTATACAGTGGCTAGTTGGTACATACAACACCCAAATTCTCCTAATGGTGTTTCTCGCCATTGTTTCTCTCCTCCTCGCTGGCTTCTTCGCTTACCATGCAAATCTCTGCTTAACCAACACAACAACTAATGAGACGTTTAAGTGGAGAGAGTATATAAGCTTAAATAAGAAGCTCAGTGAAGCTAAGGCGAGCGCTGCTGCTCTCAAGGCCGGGATGTCATGTGAACTAAAGAAGCCATCAGCTGAAAGCAAATGCTTCGGGCTTTGTGGAAGATCCTCTGCCCGTGAAGAAGAAGTCAAAGCCGACGCTATAGCGAAACGGAATTTGTATGATAGAGGAAGTTTTCAAAACGTTTCTGAGATTGTTTTCCCTTTATCATCAAGACCATCTTCTTCCAACAAATCAAAACGAAAATCGGAATAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
DHHC

Protein Analysis

397

Amino Acids

44.95

Weight (kDa)

9.16

Isoelectric Point (pI)

37.47

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
DHHC PF01529 158 - 302 5.9e-37 DHHC palmitoyltransferase
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB1I GGYRCC 1 cut(s) 131
AciI CCGC 2 cut(s) 5, 541
AclI AACGTT 1 cut(s) 1122
AclWI GGATC 4 cut(s) 274, 395, 510, 1038
AcoI YGGCCR 1 cut(s) 77
AcsI RAATTY 2 cut(s) 804, 1093
AcyI GRCGYC 1 cut(s) 132
AfaI GTAC 8 cut(s) 9, 184, 341, 409, 437, 653, 711, 790
AfeI AGCGCT 1 cut(s) 964
AfiI CCNNNNNNNGG 1 cut(s) 547
AflIII ACRYGT 1 cut(s) 491
AgsI TTSAA 3 cut(s) 88, 104, 1118
AjiI CACGTC 1 cut(s) 190
AjnI CCWGG 2 cut(s) 310, 403
AluBI AGCT 7 cut(s) 348, 356, 761, 930, 943, 953, 1013
AluI AGCT 7 cut(s) 348, 356, 761, 930, 943, 953, 1013
Alw26I GTCTC 1 cut(s) 896
AlwI GGATC 4 cut(s) 274, 395, 510, 1038
AlwNI CAGNNNCTG 2 cut(s) 410, 534
Ama87I CYCGRG 1 cut(s) 765
Aor51HI AGCGCT 1 cut(s) 964
AoxI GGCC 2 cut(s) 77, 978
ApeKI GCWGC 4 cut(s) 216, 528, 965, 968
ApoI RAATTY 2 cut(s) 804, 1093
AspLEI GCGC 2 cut(s) 134, 965
AsuC2I CCSGG 1 cut(s) 982
AvaI CYCGRG 1 cut(s) 765
BaeI ACNNNNGTAYC 2 cut(s) 174, 207
BalI TGGCCA 1 cut(s) 79
BanI GGYRCC 1 cut(s) 131
BbvI GCAGC 4 cut(s) 203, 540, 952, 955
BccI CCATC 3 cut(s) 674, 1015, 1165
BcgI CGANNNNNNTGC 2 cut(s) 1009, 1043
BciT130I CCWGG 2 cut(s) 312, 405
BclI TGATCA 1 cut(s) 559
BcnI CCSGG 1 cut(s) 982
BcoDI GTCTC 1 cut(s) 896
BfaI CTAG 3 cut(s) 353, 513, 782
BfmI CTRYAG 1 cut(s) 1080
BfoI RGCGCY 2 cut(s) 135, 966
BisI GCNGC 4 cut(s) 217, 529, 966, 969
BlsI GCNGC 4 cut(s) 218, 530, 967, 970
Bme1390I CCNGG 3 cut(s) 312, 405, 982
BmeT110I CYCGRG 1 cut(s) 765
BmgBI CACGTC 1 cut(s) 190
BmiI GGNNCC 2 cut(s) 133, 175
BmrFI CCNGG 3 cut(s) 312, 405, 982
BmsI GCATC 1 cut(s) 540
BoxI GACNNNNGTC 1 cut(s) 50
Bpu10I CCTNAGC 1 cut(s) 954
BpuEI CTTGAG 1 cut(s) 959
BpuMI CCSGG 1 cut(s) 982
BsaAI YACGTR 1 cut(s) 492
BsaHI GRCGYC 1 cut(s) 132
BsaJI CCNNGG 1 cut(s) 177
Bsc4I CCNNNNNNNGG 1 cut(s) 547
Bse3DI GCAATG 1 cut(s) 523
BseBI CCWGG 2 cut(s) 312, 405
BseDI CCNNGG 1 cut(s) 177
BseGI GGATG 3 cut(s) 39, 582, 990
BseLI CCNNNNNNNGG 1 cut(s) 547
BseMI GCAATG 1 cut(s) 523
BseMII CTCAG 4 cut(s) 140, 411, 958, 1119
BseRI GAGGAG 3 cut(s) 753, 830, 833
BseXI GCAGC 4 cut(s) 203, 540, 952, 955
BseYI CCCAGC 1 cut(s) 683
Bsh1285I CGRYCG 1 cut(s) 223
BshFI GGCC 2 cut(s) 79, 980
BshNI GGYRCC 1 cut(s) 131
BsiEI CGRYCG 1 cut(s) 223
BsiHKCI CYCGRG 1 cut(s) 765
BsiSI CCGG 1 cut(s) 981
BslI CCNNNNNNNGG 1 cut(s) 547
BsmAI GTCTC 1 cut(s) 896
BsmBI CGTCTC 1 cut(s) 896
BsnI GGCC 2 cut(s) 79, 980
BsoBI CYCGRG 1 cut(s) 765
Bsp1407I TGTACA 1 cut(s) 709
Bsp143I GATC 6 cut(s) 220, 266, 400, 515, 559, 1043
BspACI CCGC 2 cut(s) 5, 541
BspANI GGCC 2 cut(s) 79, 980
BspCNI CTCAG 4 cut(s) 141, 412, 957, 1120
BspLI GGNNCC 2 cut(s) 133, 175
BspPI GGATC 4 cut(s) 274, 395, 510, 1038
BspT107I GGYRCC 1 cut(s) 131
BsrDI GCAATG 1 cut(s) 523
BsrGI TGTACA 1 cut(s) 709
BssECI CCNNGG 1 cut(s) 177
BssMI GATC 6 cut(s) 220, 266, 400, 515, 559, 1043
BssNI GRCGYC 1 cut(s) 132
BssT1I CCWWGG 1 cut(s) 177
Bst2UI CCWGG 2 cut(s) 312, 405
Bst4CI ACNGT 9 cut(s) 12, 49, 412, 435, 587, 661, 724, 734, 777
BstACI GRCGYC 1 cut(s) 132
BstAPI GCANNNNNTGC 1 cut(s) 534
BstAUI TGTACA 1 cut(s) 709
BstBAI YACGTR 1 cut(s) 492
BstC8I GCNNGC 3 cut(s) 510, 850, 961
BstDEI CTNAG 5 cut(s) 149, 420, 944, 954, 1128
BstF5I GGATG 3 cut(s) 39, 582, 990
BstH2I RGCGCY 2 cut(s) 135, 966
BstHHI GCGC 2 cut(s) 134, 965
BstKTI GATC 6 cut(s) 223, 269, 403, 518, 562, 1046
BstMAI GTCTC 1 cut(s) 896
BstMBI GATC 6 cut(s) 220, 266, 400, 515, 559, 1043
BstMCI CGRYCG 1 cut(s) 223
BstMWI GCNNNNNNNGC 4 cut(s) 534, 866, 965, 977
BstNI CCWGG 2 cut(s) 312, 405
BstNSI RCATGY 1 cut(s) 393
BstPAI GACNNNNGTC 1 cut(s) 50
BstSCI CCNGG 3 cut(s) 310, 403, 980
BstSFI CTRYAG 1 cut(s) 1080
BstV1I GCAGC 4 cut(s) 203, 540, 952, 955
BstX2I RGATCY 2 cut(s) 515, 1043
BstYI RGATCY 2 cut(s) 515, 1043
BsuRI GGCC 2 cut(s) 79, 980
BtgZI GCGATG 1 cut(s) 342
BtrI CACGTC 1 cut(s) 190
BtsCI GGATG 3 cut(s) 39, 582, 990
BtsIMutI CAGTG 3 cut(s) 17, 782, 952
Cac8I GCNNGC 3 cut(s) 510, 850, 961
CaiI CAGNNNCTG 2 cut(s) 410, 534
CfoI GCGC 2 cut(s) 134, 965
CseI GACGC 1 cut(s) 1085
Csp6I GTAC 8 cut(s) 8, 183, 340, 408, 436, 652, 710, 789
CviAII CATG 4 cut(s) 390, 616, 866, 990
CviQI GTAC 8 cut(s) 8, 183, 340, 408, 436, 652, 710, 789
DdeI CTNAG 5 cut(s) 149, 420, 944, 954, 1128
DinI GGCGCC 1 cut(s) 133
DpnI GATC 6 cut(s) 222, 268, 402, 517, 561, 1045
DpnII GATC 6 cut(s) 220, 266, 400, 515, 559, 1043
EaeI YGGCCR 1 cut(s) 77
Eco130I CCWWGG 1 cut(s) 177
Eco32I GATATC 1 cut(s) 463
Eco47III AGCGCT 1 cut(s) 964
Eco88I CYCGRG 1 cut(s) 765
EcoRII CCWGG 2 cut(s) 310, 403
EcoRV GATATC 1 cut(s) 463
EcoT14I CCWWGG 1 cut(s) 177
EgeI GGCGCC 1 cut(s) 133
EheI GGCGCC 1 cut(s) 133
ErhI CCWWGG 1 cut(s) 177
Esp3I CGTCTC 1 cut(s) 896
FaeI CATG 4 cut(s) 393, 619, 869, 993
FalI AAGNNNNNCTT 2 cut(s) 1144, 1176
FatI CATG 4 cut(s) 389, 615, 865, 989
FbaI TGATCA 1 cut(s) 559
Fnu4HI GCNGC 4 cut(s) 217, 529, 966, 969
FokI GGATG 3 cut(s) 46, 589, 997
Fsp4HI GCNGC 4 cut(s) 217, 529, 966, 969
FspBI CTAG 3 cut(s) 353, 513, 782
GlaI GCGC 2 cut(s) 133, 964
GluI GCNGC 4 cut(s) 217, 529, 966, 969
GsaI CCCAGC 1 cut(s) 687
HaeII RGCGCY 2 cut(s) 135, 966
HaeIII GGCC 2 cut(s) 79, 980
HapII CCGG 1 cut(s) 981
HgaI GACGC 1 cut(s) 1085
HhaI GCGC 2 cut(s) 134, 965
Hin1I GRCGYC 1 cut(s) 132
Hin1II CATG 4 cut(s) 393, 619, 869, 993
Hin6I GCGC 2 cut(s) 132, 963
HinP1I GCGC 2 cut(s) 132, 963
HincII GTYRAC 1 cut(s) 45
HindII GTYRAC 1 cut(s) 45
HindIII AAGCTT 2 cut(s) 346, 928
HinfI GANTC 3 cut(s) 109, 193, 235
HpaII CCGG 1 cut(s) 981
Hpy166II GTNNAC 5 cut(s) 45, 334, 342, 415, 995
Hpy188I TCNGA 7 cut(s) 161, 234, 400, 671, 752, 1129, 1189
Hpy188III TCNNGA 2 cut(s) 148, 1152
Hpy8I GTNNAC 5 cut(s) 45, 334, 342, 415, 995
Hpy99I CGWCG 1 cut(s) 1079
HpyAV CCTTC 2 cut(s) 70, 650
HpyCH4III ACNGT 9 cut(s) 12, 49, 412, 435, 587, 661, 724, 734, 777
HpyCH4IV ACGT 5 cut(s) 41, 189, 491, 905, 1122
HpyCH4V TGCA 5 cut(s) 241, 287, 528, 537, 869
HpyF10VI GCNNNNNNNGC 4 cut(s) 534, 866, 965, 977
HpyF3I CTNAG 5 cut(s) 149, 420, 944, 954, 1128
HpySE526I ACGT 5 cut(s) 41, 189, 491, 905, 1122
Hsp92I GRCGYC 1 cut(s) 132
Hsp92II CATG 4 cut(s) 393, 619, 869, 993
HspAI GCGC 2 cut(s) 132, 963
KasI GGCGCC 1 cut(s) 131
Ksp22I TGATCA 1 cut(s) 559
Kzo9I GATC 6 cut(s) 220, 266, 400, 515, 559, 1043
LmnI GCTCC 1 cut(s) 766
LpnPI CCDG 9 cut(s) 161, 297, 324, 390, 417, 522, 669, 834, 994
Lsp1109I GCAGC 4 cut(s) 203, 540, 952, 955
LweI GCATC 1 cut(s) 540
MaeI CTAG 3 cut(s) 353, 513, 782
MaeII ACGT 5 cut(s) 41, 189, 491, 905, 1122
MaeIII GTNAC 1 cut(s) 26
MalI GATC 6 cut(s) 222, 268, 402, 517, 561, 1045
MboI GATC 6 cut(s) 220, 266, 400, 515, 559, 1043
MboII GAAGA 8 cut(s) 76, 285, 847, 1053, 1070, 1073, 1152, 1155
MflI RGATCY 2 cut(s) 515, 1043
MlsI TGGCCA 1 cut(s) 79
MluCI AATT 2 cut(s) 804, 1093
MluNI TGGCCA 1 cut(s) 79
Mly113I GGCGCC 1 cut(s) 132
MmeI TCCRAC 2 cut(s) 139, 1191
MnlI CCTC 8 cut(s) 74, 131, 635, 774, 851, 854, 1057, 1100
Mox20I TGGCCA 1 cut(s) 79
MscI TGGCCA 1 cut(s) 79
MseI TTAA 5 cut(s) 386, 719, 881, 909, 932
MslI CAYNNNNRTG 1 cut(s) 567
Msp20I TGGCCA 1 cut(s) 79
MspA1I CMGCKG 2 cut(s) 543, 1013
MspI CCGG 1 cut(s) 981
MspR9I CCNGG 3 cut(s) 312, 405, 982
MvaI CCWGG 2 cut(s) 312, 405
MwoI GCNNNNNNNGC 4 cut(s) 534, 866, 965, 977
NarI GGCGCC 1 cut(s) 132
NciI CCSGG 1 cut(s) 982
NdeII GATC 6 cut(s) 220, 266, 400, 515, 559, 1043
NlaIII CATG 4 cut(s) 393, 619, 869, 993
NlaIV GGNNCC 2 cut(s) 133, 175
NmuCI GTSAC 1 cut(s) 26
NspI RCATGY 1 cut(s) 393
PaeR7I CTCGAG 1 cut(s) 765
PcsI WCGNNNNNNNCGW 1 cut(s) 135
PfeI GAWTC 3 cut(s) 109, 193, 235
PkrI GCNGC 4 cut(s) 218, 530, 967, 970
Ple19I CGATCG 1 cut(s) 223
PluTI GGCGCC 1 cut(s) 135
Ppu21I YACGTR 1 cut(s) 492
PshAI GACNNNNGTC 1 cut(s) 50
Psp1406I AACGTT 1 cut(s) 1122
Psp6I CCWGG 2 cut(s) 310, 403
PspFI CCCAGC 1 cut(s) 683
PspGI CCWGG 2 cut(s) 310, 403
PspN4I GGNNCC 2 cut(s) 133, 175
PspXI VCTCGAGB 1 cut(s) 765
PstNI CAGNNNCTG 2 cut(s) 410, 534
PsuI RGATCY 2 cut(s) 515, 1043
PvuI CGATCG 1 cut(s) 223
PvuII CAGCTG 1 cut(s) 1013
RsaI GTAC 8 cut(s) 9, 184, 341, 409, 437, 653, 711, 790
RsaNI GTAC 8 cut(s) 8, 183, 340, 408, 436, 652, 710, 789
RseI CAYNNNNRTG 1 cut(s) 567
SaqAI TTAA 5 cut(s) 386, 719, 881, 909, 932
SatI GCNGC 4 cut(s) 217, 529, 966, 969
Sau3AI GATC 6 cut(s) 220, 266, 400, 515, 559, 1043
ScrFI CCNGG 3 cut(s) 312, 405, 982
SfaNI GCATC 1 cut(s) 540
SfcI CTRYAG 1 cut(s) 1080
SfoI GGCGCC 1 cut(s) 133
Sfr274I CTCGAG 1 cut(s) 765
SlaI CTCGAG 1 cut(s) 765
SmiMI CAYNNNNRTG 1 cut(s) 567
SmlI CTYRAG 2 cut(s) 765, 974
SmoI CTYRAG 2 cut(s) 765, 974
Sse9I AATT 2 cut(s) 804, 1093
SsiI CCGC 2 cut(s) 5, 541
SspDI GGCGCC 1 cut(s) 131
SspI AATATT 1 cut(s) 611
SspMI CTAG 3 cut(s) 353, 513, 782
StyD4I CCNGG 3 cut(s) 310, 403, 980
StyI CCWWGG 1 cut(s) 177
TaaI ACNGT 9 cut(s) 12, 49, 412, 435, 587, 661, 724, 734, 777
TaiI ACGT 5 cut(s) 44, 192, 494, 908, 1125
TaqI TCGA 1 cut(s) 766
TasI AATT 2 cut(s) 804, 1093
TatI WGTACW 2 cut(s) 339, 709
TfiI GAWTC 3 cut(s) 109, 193, 235
Tru1I TTAA 5 cut(s) 386, 719, 881, 909, 932
Tru9I TTAA 5 cut(s) 386, 719, 881, 909, 932
TscAI CASTG 3 cut(s) 17, 782, 952
TseFI GTSAC 1 cut(s) 26
TseI GCWGC 4 cut(s) 216, 528, 965, 968
Tsp45I GTSAC 1 cut(s) 26
TspDTI ATGAA 3 cut(s) 289, 593, 604
TspGWI ACGGA 4 cut(s) 200, 669, 692, 1105
TspRI CASTG 3 cut(s) 17, 782, 952
XapI RAATTY 2 cut(s) 804, 1093
XceI RCATGY 1 cut(s) 393
XcmI CCANNNNNNNNNTGG 1 cut(s) 613
XhoI CTCGAG 1 cut(s) 765
XspI CTAG 3 cut(s) 353, 513, 782
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.