Basic Information

Type: gene

Biological Identity

Species

pyrus_communis

Chromosome

Chr12

Orthogroup ID

OG0006568

Physical Location & Seq

Genomic Coordinates Forward (+)

22442776 .. 22446286

Gene Structure 3511 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

pycom12g21220.6

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1191 bp

ATGGAGGTACAGTGGATTCTGGTGTGCCATGGTTTAGTCACACTGCTCGTTCTAGTCTCCTTCCTCTGCGGCCAGTGGCCCATCTTCGACGGCACCCCTATCCAACGCATCAACCACTTCCTCACCTTCGGCGCCTACGATTACTTTCAACGGTTTGTTGGGTTTGTGTTTGGAGCCAGGGGGACAAATGCCATAGCCTCCGCAGAGTATTTCTGCTGCGATCGACCCAATCCAATCTTACAGATCATGTATTTTGCAATAGTAGGAGGAACCTATTACTTGGTTGCAACTTCTTCCTTCCGTTACATTCCTGGCTATTATATAAGTGAAATTCACAGGTATGCGAGCTTGTTCGCTGTTGGAGTCGGTGTTCTGCTCTTTCTATTGGCTAGCTTTTCTGATCCAGGAACTGTGAAAGCTGATAATGTTTCTCTGTATCTATCTGCTTATCCTTATGATAATATTATATATTCTGAGAAAGACTGTTCAACATGCAAAATTCCAAAACCTGCTAGGTCAAAGCATTGCAGCATATGTGATCGATGTGTTGCCCGTTTTGATCGATCATCATTGTGGATGGATGTGCAGAATAATTGTATAGGTGAGAGAAACACCCGGTACTTCATAGCTTTTCTTTTGTGGCACACTTTACTTTGCATATATGGAACAGTGGCCATTGGGTTAATTCTTGCTGGACAAGTTAAAGAATTCAAAGTTATTGATATTCTAACCGTTTATTATGGTATAGATAATTCTTTTCGCGGTTTAACACCGCATGTTGTGCAGTGGTTGTTGGGCGCCTACAACACTCAAATACTTCTAATGGTGTTTCTGGCAATTGTTTCACTACTATTGGCGGGTTTCTTTGGTTACCATGCAAAACTTTGTCTCACAAACACTACAACTAATGAGACTTTCAAGTGGCAAGACTACATAAGCTGGCAGAGGAAGCTGAATGAAGCAAGGGCGAGTTCTGCAGCACTCAAAGCAAGTATCAATGGGACAGATAGTGAAAGAAAACCTCCAGAGAGCAAATGGAGAGCCATTTTCCGAAGATCACCACTCAAAGAGGTGGACGTTGTGGTTAAGAATAACATGTACGATAAAGGATTCTTCCAGAATATTCTTGAGGTCATTGTTCCCCTCTCAAGAAGGCAGCTGGCTTCGCAAACCAAATCAAAGTCTGGCTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

DHHC

Protein Analysis

397

Amino Acids

44.92

Weight (kDa)

9.02

Isoelectric Point (pI)

30.21

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0006568)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G04970 AT3G04970 AT3G04970
fragaria_vesca	FvH4_6g04920 FvH4_6g04920 FvH4_6g04920 FvH4_6g04920 FvH4_6g04920 FvH4_6g04920
malus_domestica	MD04G1213200.v1.1 MD12G1227400.v1.1
prunus_persica	Prupe.6G333100_v2.0.a1
pyrus_communis	pycom04g18880 pycom12g21220
rosa_chinensis	RchiOBHm_Chr3g0453421
rosa_laevigata	RLG00000025516
rosa_multiflora	Rmu_sc0000510.1_g000004 Rmu_sc0010297.1_g000001
rosa_roxburghii	Rroxscaffold_6G00430390
rosa_rugosa	Rorug02G0648800 Rorug02G0648800
rosa_samantha	Rh3AG051700 Rh3BG053100 Rh3CG052400 Rh3DG053200
rosa_wichuraiana	Rw3G003970

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc36I	ACCTGC	1 cut(s)	517
AccB1I	GGYRCC	3 cut(s)	92, 131, 797
AccII	CGCG	1 cut(s)	762
AciI	CCGC	5 cut(s)	69, 201, 762, 773, 857
AclWI	GGATC	1 cut(s)	395
AcoI	YGGCCR	2 cut(s)	70, 672
AcsI	RAATTY	3 cut(s)	330, 498, 707
AcyI	GRCGYC	2 cut(s)	132, 798
AfaI	GTAC	3 cut(s)	9, 620, 1100
AflIII	ACRYGT	1 cut(s)	1095
AgsI	TTSAA	4 cut(s)	149, 489, 712, 919
AjnI	CCWGG	3 cut(s)	176, 310, 403
AloI	GAACNNNNNNTCC	2 cut(s)	354, 386
AluBI	AGCT	7 cut(s)	348, 393, 419, 629, 939, 952, 1159
AluI	AGCT	7 cut(s)	348, 393, 419, 629, 939, 952, 1159
Alw26I	GTCTC	3 cut(s)	61, 893, 905
AlwI	GGATC	1 cut(s)	395
AlwNI	CAGNNNCTG	1 cut(s)	410
AoxI	GGCC	3 cut(s)	70, 77, 672
ApeKI	GCWGC	4 cut(s)	216, 528, 977, 1156
ApoI	RAATTY	3 cut(s)	330, 498, 707
AspLEI	GCGC	2 cut(s)	134, 800
AspS9I	GGNCC	1 cut(s)	78
AsuC2I	CCSGG	1 cut(s)	616
AsuHPI	GGTGA	3 cut(s)	115, 614, 1050
AsuNHI	GCTAGC	1 cut(s)	389
BalI	TGGCCA	1 cut(s)	674
BanI	GGYRCC	3 cut(s)	92, 131, 797
BbvI	GCAGC	4 cut(s)	203, 540, 989, 1168
BccI	CCATC	2 cut(s)	89, 571
BceAI	ACGGC	1 cut(s)	106
BciT130I	CCWGG	3 cut(s)	178, 312, 405
BcnI	CCSGG	1 cut(s)	616
BcoDI	GTCTC	3 cut(s)	61, 893, 905
BfaI	CTAG	3 cut(s)	53, 390, 513
BfmI	CTRYAG	1 cut(s)	975
BfoI	RGCGCY	2 cut(s)	135, 801
BfuAI	ACCTGC	1 cut(s)	517
BisI	GCNGC	5 cut(s)	70, 217, 529, 978, 1157
BlsI	GCNGC	5 cut(s)	71, 218, 530, 979, 1158
Bme1390I	CCNGG	4 cut(s)	178, 312, 405, 616
BmgT120I	GGNCC	1 cut(s)	78
BmiI	GGNNCC	5 cut(s)	94, 133, 175, 271, 799
BmrFI	CCNGG	4 cut(s)	178, 312, 405, 616
BmsI	GCATC	1 cut(s)	117
BmtI	GCTAGC	1 cut(s)	393
BpmI	CTGGAG	1 cut(s)	1008
BpuEI	CTTGAG	2 cut(s)	1132, 1148
BpuMI	CCSGG	1 cut(s)	616
Bsa29I	ATCGAT	2 cut(s)	541, 562
BsaHI	GRCGYC	2 cut(s)	132, 798
BsaJI	CCNNGG	2 cut(s)	28, 177
BsaXI	ACNNNNNCTCC	3 cut(s)	26, 354, 384
Bse1I	ACTGG	1 cut(s)	73
Bse3DI	GCAATG	1 cut(s)	523
BseBI	CCWGG	3 cut(s)	178, 312, 405
BseCI	ATCGAT	2 cut(s)	541, 562
BseDI	CCNNGG	2 cut(s)	28, 177
BseGI	GGATG	2 cut(s)	582, 586
BseMI	GCAATG	1 cut(s)	523
BseMII	CTCAG	1 cut(s)	465
BseNI	ACTGG	1 cut(s)	73
BseXI	GCAGC	4 cut(s)	203, 540, 989, 1168
BsgI	GTGCAG	2 cut(s)	605, 803
Bsh1236I	CGCG	1 cut(s)	762
Bsh1285I	CGRYCG	1 cut(s)	223
BshFI	GGCC	3 cut(s)	72, 79, 674
BshNI	GGYRCC	3 cut(s)	92, 131, 797
BshVI	ATCGAT	2 cut(s)	541, 562
BsiEI	CGRYCG	1 cut(s)	223
BsiSI	CCGG	1 cut(s)	616
BslFI	GGGAC	2 cut(s)	196, 1015
BsmAI	GTCTC	3 cut(s)	61, 893, 905
BsmFI	GGGAC	2 cut(s)	196, 1015
BsnI	GGCC	3 cut(s)	72, 79, 674
Bsp143I	GATC	7 cut(s)	220, 243, 400, 538, 559, 563, 1055
Bsp19I	CCATGG	1 cut(s)	28
BspACI	CCGC	5 cut(s)	69, 201, 762, 773, 857
BspANI	GGCC	3 cut(s)	72, 79, 674
BspCNI	CTCAG	1 cut(s)	466
BspDI	ATCGAT	2 cut(s)	541, 562
BspFNI	CGCG	1 cut(s)	762
BspLI	GGNNCC	5 cut(s)	94, 133, 175, 271, 799
BspMAI	CTGCAG	1 cut(s)	979
BspMI	ACCTGC	1 cut(s)	517
BspOI	GCTAGC	1 cut(s)	393
BspPI	GGATC	1 cut(s)	395
BspT107I	GGYRCC	3 cut(s)	92, 131, 797
BsrDI	GCAATG	1 cut(s)	523
BsrI	ACTGG	1 cut(s)	73
BssECI	CCNNGG	2 cut(s)	28, 177
BssMI	GATC	7 cut(s)	220, 243, 400, 538, 559, 563, 1055
BssNI	GRCGYC	2 cut(s)	132, 798
BssT1I	CCWWGG	1 cut(s)	28
Bst2UI	CCWGG	3 cut(s)	178, 312, 405
Bst4CI	ACNGT	6 cut(s)	12, 153, 412, 485, 670, 733
BstACI	GRCGYC	2 cut(s)	132, 798
BstAPI	GCANNNNNTGC	1 cut(s)	781
BstC8I	GCNNGC	4 cut(s)	346, 391, 941, 1161
BstDEI	CTNAG	1 cut(s)	474
BstDSI	CCRYGG	1 cut(s)	28
BstEII	GGTNACC	1 cut(s)	869
BstF5I	GGATG	2 cut(s)	582, 586
BstFNI	CGCG	1 cut(s)	762
BstH2I	RGCGCY	2 cut(s)	135, 801
BstHHI	GCGC	2 cut(s)	134, 800
BstKTI	GATC	7 cut(s)	223, 246, 403, 541, 562, 566, 1058
BstMAI	GTCTC	3 cut(s)	61, 893, 905
BstMBI	GATC	7 cut(s)	220, 243, 400, 538, 559, 563, 1055
BstMCI	CGRYCG	1 cut(s)	223
BstMWI	GCNNNNNNNGC	5 cut(s)	781, 949, 974, 986, 1165
BstNI	CCWGG	3 cut(s)	178, 312, 405
BstNSI	RCATGY	3 cut(s)	495, 779, 1099
BstPI	GGTNACC	1 cut(s)	869
BstSCI	CCNGG	4 cut(s)	176, 310, 403, 614
BstSFI	CTRYAG	1 cut(s)	975
BstUI	CGCG	1 cut(s)	762
BstV1I	GCAGC	4 cut(s)	203, 540, 989, 1168
Bsu15I	ATCGAT	2 cut(s)	541, 562
BsuRI	GGCC	3 cut(s)	72, 79, 674
BsuTUI	ATCGAT	2 cut(s)	541, 562
BtgI	CCRYGG	1 cut(s)	28
BtsCI	GGATG	2 cut(s)	582, 586
BtsI	GCAGTG	2 cut(s)	41, 791
BtsIMutI	CAGTG	5 cut(s)	17, 41, 80, 675, 791
BveI	ACCTGC	1 cut(s)	517
Cac8I	GCNNGC	4 cut(s)	346, 391, 941, 1161
CaiI	CAGNNNCTG	1 cut(s)	410
CfoI	GCGC	2 cut(s)	134, 800
Cfr13I	GGNCC	1 cut(s)	78
ClaI	ATCGAT	2 cut(s)	541, 562
Csp6I	GTAC	3 cut(s)	8, 619, 1099
CviAII	CATG	6 cut(s)	29, 247, 492, 776, 875, 1096
CviQI	GTAC	3 cut(s)	8, 619, 1099
DdeI	CTNAG	1 cut(s)	474
DinI	GGCGCC	2 cut(s)	133, 799
DpnI	GATC	7 cut(s)	222, 245, 402, 540, 561, 565, 1057
DpnII	GATC	7 cut(s)	220, 243, 400, 538, 559, 563, 1055
EaeI	YGGCCR	2 cut(s)	70, 672
Eco130I	CCWWGG	1 cut(s)	28
Eco91I	GGTNACC	1 cut(s)	869
EcoO65I	GGTNACC	1 cut(s)	869
EcoRI	GAATTC	1 cut(s)	707
EcoRII	CCWGG	3 cut(s)	176, 310, 403
EcoT14I	CCWWGG	1 cut(s)	28
EgeI	GGCGCC	2 cut(s)	133, 799
EheI	GGCGCC	2 cut(s)	133, 799
ErhI	CCWWGG	1 cut(s)	28
FaeI	CATG	6 cut(s)	32, 250, 495, 779, 878, 1099
FaqI	GGGAC	2 cut(s)	196, 1015
FatI	CATG	6 cut(s)	28, 246, 491, 775, 874, 1095
FauI	CCCGC	1 cut(s)	850
FauNDI	CATATG	1 cut(s)	533
Fnu4HI	GCNGC	5 cut(s)	70, 217, 529, 978, 1157
FokI	GGATG	2 cut(s)	589, 593
Fsp4HI	GCNGC	5 cut(s)	70, 217, 529, 978, 1157
FspBI	CTAG	3 cut(s)	53, 390, 513
GlaI	GCGC	2 cut(s)	133, 799
GluI	GCNGC	5 cut(s)	70, 217, 529, 978, 1157
GsuI	CTGGAG	1 cut(s)	1008
HaeII	RGCGCY	2 cut(s)	135, 801
HaeIII	GGCC	3 cut(s)	72, 79, 674
HapII	CCGG	1 cut(s)	616
HhaI	GCGC	2 cut(s)	134, 800
Hin1I	GRCGYC	2 cut(s)	132, 798
Hin1II	CATG	6 cut(s)	32, 250, 495, 779, 878, 1099
Hin6I	GCGC	2 cut(s)	132, 798
HinP1I	GCGC	2 cut(s)	132, 798
HinfI	GANTC	3 cut(s)	16, 363, 1110
HpaII	CCGG	1 cut(s)	616
HphI	GGTGA	3 cut(s)	115, 614, 1050
Hpy166II	GTNNAC	1 cut(s)	1075
Hpy188I	TCNGA	3 cut(s)	400, 475, 1052
Hpy188III	TCNNGA	4 cut(s)	1025, 1117, 1127, 1149
Hpy8I	GTNNAC	1 cut(s)	1075
Hpy99I	CGWCG	1 cut(s)	92
HpyAV	CCTTC	4 cut(s)	70, 136, 307, 1146
HpyCH4III	ACNGT	6 cut(s)	12, 153, 412, 485, 670, 733
HpyCH4IV	ACGT	1 cut(s)	1077
HpyCH4V	TGCA	9 cut(s)	257, 287, 495, 528, 586, 657, 784, 878, 977
HpyF10VI	GCNNNNNNNGC	5 cut(s)	781, 949, 974, 986, 1165
HpyF3I	CTNAG	1 cut(s)	474
HpySE526I	ACGT	1 cut(s)	1077
Hsp92I	GRCGYC	2 cut(s)	132, 798
Hsp92II	CATG	6 cut(s)	32, 250, 495, 779, 878, 1099
HspAI	GCGC	2 cut(s)	132, 798
KasI	GGCGCC	2 cut(s)	131, 797
Kzo9I	GATC	7 cut(s)	220, 243, 400, 538, 559, 563, 1055
LmnI	GCTCC	1 cut(s)	173
Lsp1109I	GCAGC	4 cut(s)	203, 540, 989, 1168
LweI	GCATC	1 cut(s)	117
MaeI	CTAG	3 cut(s)	53, 390, 513
MaeII	ACGT	1 cut(s)	1077
MaeIII	GTNAC	3 cut(s)	37, 302, 869
MalI	GATC	7 cut(s)	222, 245, 402, 540, 561, 565, 1057
MboI	GATC	7 cut(s)	220, 243, 400, 538, 559, 563, 1055
MboII	GAAGA	4 cut(s)	76, 285, 1065, 1105
MfeI	CAATTG	1 cut(s)	837
MlsI	TGGCCA	1 cut(s)	674
MluCI	AATT	7 cut(s)	330, 498, 592, 684, 707, 751, 837
MluNI	TGGCCA	1 cut(s)	674
Mly113I	GGCGCC	2 cut(s)	132, 798
MlyI	GAGTC	1 cut(s)	372
MmeI	TCCRAC	2 cut(s)	127, 340
MnlI	CCTC	9 cut(s)	74, 131, 208, 260, 939, 1032, 1063, 1123, 1154
Mox20I	TGGCCA	1 cut(s)	674
MscI	TGGCCA	1 cut(s)	674
MseI	TTAA	4 cut(s)	683, 702, 767, 1086
MslI	CAYNNNNRTG	2 cut(s)	339, 571
Msp20I	TGGCCA	1 cut(s)	674
MspA1I	CMGCKG	1 cut(s)	1159
MspI	CCGG	1 cut(s)	616
MspR9I	CCNGG	4 cut(s)	178, 312, 405, 616
MunI	CAATTG	1 cut(s)	837
MvaI	CCWGG	3 cut(s)	178, 312, 405
MvnI	CGCG	1 cut(s)	762
MwoI	GCNNNNNNNGC	5 cut(s)	781, 949, 974, 986, 1165
NarI	GGCGCC	2 cut(s)	132, 798
NciI	CCSGG	1 cut(s)	616
NcoI	CCATGG	1 cut(s)	28
NdeI	CATATG	1 cut(s)	533
NdeII	GATC	7 cut(s)	220, 243, 400, 538, 559, 563, 1055
NheI	GCTAGC	1 cut(s)	389
NlaIII	CATG	6 cut(s)	32, 250, 495, 779, 878, 1099
NlaIV	GGNNCC	5 cut(s)	94, 133, 175, 271, 799
NmuCI	GTSAC	1 cut(s)	37
NspI	RCATGY	3 cut(s)	495, 779, 1099
PciI	ACATGT	1 cut(s)	1095
PcsI	WCGNNNNNNNCGW	1 cut(s)	135
PfeI	GAWTC	2 cut(s)	16, 1110
PfoI	TCCNGGA	1 cut(s)	403
PkrI	GCNGC	5 cut(s)	71, 218, 530, 979, 1158
Ple19I	CGATCG	1 cut(s)	223
PleI	GAGTC	1 cut(s)	371
PluTI	GGCGCC	2 cut(s)	135, 801
PpsI	GAGTC	1 cut(s)	371
PscI	ACATGT	1 cut(s)	1095
Psp6I	CCWGG	3 cut(s)	176, 310, 403
PspEI	GGTNACC	1 cut(s)	869
PspGI	CCWGG	3 cut(s)	176, 310, 403
PspN4I	GGNNCC	5 cut(s)	94, 133, 175, 271, 799
PspPI	GGNCC	1 cut(s)	78
PstI	CTGCAG	1 cut(s)	979
PstNI	CAGNNNCTG	1 cut(s)	410
PvuI	CGATCG	1 cut(s)	223
PvuII	CAGCTG	1 cut(s)	1159
RsaI	GTAC	3 cut(s)	9, 620, 1100
RsaNI	GTAC	3 cut(s)	8, 619, 1099
RseI	CAYNNNNRTG	2 cut(s)	339, 571
SaqAI	TTAA	4 cut(s)	683, 702, 767, 1086
SatI	GCNGC	5 cut(s)	70, 217, 529, 978, 1157
Sau3AI	GATC	7 cut(s)	220, 243, 400, 538, 559, 563, 1055
Sau96I	GGNCC	1 cut(s)	78
SchI	GAGTC	1 cut(s)	372
ScrFI	CCNGG	4 cut(s)	178, 312, 405, 616
SfaNI	GCATC	1 cut(s)	117
SfcI	CTRYAG	1 cut(s)	975
SfoI	GGCGCC	2 cut(s)	133, 799
SmiMI	CAYNNNNRTG	2 cut(s)	339, 571
SmlI	CTYRAG	2 cut(s)	1127, 1147
SmoI	CTYRAG	2 cut(s)	1127, 1147
Sse9I	AATT	7 cut(s)	330, 498, 592, 684, 707, 751, 837
SsiI	CCGC	5 cut(s)	69, 201, 762, 773, 857
SspDI	GGCGCC	2 cut(s)	131, 797
SspI	AATATT	2 cut(s)	463, 1123
SspMI	CTAG	3 cut(s)	53, 390, 513
StyD4I	CCNGG	4 cut(s)	176, 310, 403, 614
StyI	CCWWGG	1 cut(s)	28
TaaI	ACNGT	6 cut(s)	12, 153, 412, 485, 670, 733
TaiI	ACGT	1 cut(s)	1080
TaqI	TCGA	4 cut(s)	87, 223, 541, 562
TasI	AATT	7 cut(s)	330, 498, 592, 684, 707, 751, 837
TauI	GCSGC	1 cut(s)	72
TfiI	GAWTC	2 cut(s)	16, 1110
Tru1I	TTAA	4 cut(s)	683, 702, 767, 1086
Tru9I	TTAA	4 cut(s)	683, 702, 767, 1086
TscAI	CASTG	5 cut(s)	17, 48, 80, 675, 791
TseFI	GTSAC	1 cut(s)	37
TseI	GCWGC	4 cut(s)	216, 528, 977, 1156
Tsp45I	GTSAC	1 cut(s)	37
TspDTI	ATGAA	2 cut(s)	613, 972
TspGWI	ACGGA	1 cut(s)	290
TspRI	CASTG	5 cut(s)	17, 48, 80, 675, 791
XapI	RAATTY	3 cut(s)	330, 498, 707
XceI	RCATGY	3 cut(s)	495, 779, 1099
XcmI	CCANNNNNNNNNTGG	1 cut(s)	1032
XspI	CTAG	3 cut(s)	53, 390, 513

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.