Rroxscaffold_6G00430390

Belongs to the DHHC palmitoyltransferase family

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_roxburghii
GWHEROQ00000006
OG0006568
Physical Location & Seq
Reverse (-)
50546415 .. 50550335
3921 bp
Loading structure...
UTR
Exon/CDS
Intron
Rroxscaffold_6G00430390.1

Sequence Viewer

Length: 1170 bp
ATGGGTGTGCAGTGGCTTCTGGTGTGCCATGGTTTGGTTACTCTACTCGTTTTAGTCTCCTTCCTCTGCGGCCAATGGCCCATCTTCGACGGCACCCCTATCCAACGCATCAATCACTTCCTCCACTTCGGCATCTGCGATTACTTCCAGCGGTTCGTTGGGTTTGTGTTTGGTGCCAAGGGGACTAATGCGATTCAGTCCGTCGAGTATTTCTGCTGTGATCGGCCCAATCCAATTTTGCAGGTTTTGTATCTTGCTATTATTGGAGGAACCTATTACTTAGTTGCAACTTCTTCCTTCTGTTATATTCCTGGCTATTATATAGGTGAAGTTCACAGGTACATAAGCTTCTTCGCTGTTGGCGTCGGTGTTCTGCTGTTTCTATTAACTAGCCTTTCCGATCCAGGAACAGTGAAGTCTGATAATGTTTCAGTTTATATCTCTGCTTACCCGTATGACAATGTGATATATTCTGAGAAAGAATGTTCAACGTGCAAAATTCCAAAACCTGCTAGGTCTAAGCATTGCAGCATATGCGGTCGCTGTGTTGCTCGCTTTGACCATCATTGTGGATGGATGAATAATTGTATAGGCGAGAGAAACATCCATTACTTTATGGCTTTTCTTTTCTGGCACACTTTACTTTGCATATATGGAACAGTTGCAATTGGGTTAATTCTTGCTGGACAAATTAAAGAATTTAGAGTTATTGATATTCTAACTGTTTATTATGGTGTAGAGAATTCATTTGTTAGTTTATCACCACATGTTATACAGTGGTTGGTGGGGTCCTACAATACTCAAATACTTCTGATGATGTTTCTTGCAATAGTGGCATTGTTAATAGCGGGTTTCTTTGGTTACCATGCAAAACTCTGTCTCACAAATACTACCACTAATGAGACTTTCAAGTGGCAAGACTATATAAACTGGCAGAGGAAGTTGAGTGAAGCAAGGGCGAGTTCTGCAGCACTCAAAGCAAGTATAAATGGGTTCACTAGTGAAAGAAAACCTCCAGAGAGCAAATGGAGAACCCTATTCCGAAGATCTCCACTCGAAGATGTCGAGGTTGTGGTTAAGAATAACATTTATGATAAAGGGTTCTTTCTGAACGTTCTTGAGATCATCTTCCCCTATCAAGAAGAAGGTTGTATGCGGGAACCAAATTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
DHHC

Protein Analysis

389

Amino Acids

44.31

Weight (kDa)

8.08

Isoelectric Point (pI)

31.57

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
DHHC PF01529 158 - 306 1e-37 DHHC palmitoyltransferase
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc36I ACCTGC 2 cut(s) 232, 517
AccB1I GGYRCC 2 cut(s) 92, 173
AccB7I CCANNNNNTGG 1 cut(s) 34
AciI CCGC 5 cut(s) 69, 151, 537, 848, 1156
AclI AACGTT 1 cut(s) 1113
AclWI GGATC 1 cut(s) 395
AcoI YGGCCR 1 cut(s) 70
AcsI RAATTY 3 cut(s) 498, 698, 742
AcyI GRCGYC 1 cut(s) 363
AfaI GTAC 1 cut(s) 341
AfiI CCNNNNNNNGG 1 cut(s) 34
AflIII ACRYGT 1 cut(s) 766
AgsI TTSAA 2 cut(s) 489, 910
AhlI ACTAGT 1 cut(s) 998
AjnI CCWGG 2 cut(s) 310, 403
AluBI AGCT 1 cut(s) 348
AluI AGCT 1 cut(s) 348
Alw26I GTCTC 3 cut(s) 61, 884, 896
AlwI GGATC 1 cut(s) 395
AoxI GGCC 3 cut(s) 70, 77, 224
ApeKI GCWGC 2 cut(s) 528, 968
ApoI RAATTY 3 cut(s) 498, 698, 742
AspS9I GGNCC 3 cut(s) 78, 225, 789
AsuHPI GGTGA 2 cut(s) 338, 753
AvaII GGWCC 1 cut(s) 789
BanI GGYRCC 2 cut(s) 92, 173
BarI GAAGNNNNNNTAC 2 cut(s) 332, 364
BbvI GCAGC 2 cut(s) 540, 980
BccI CCATC 3 cut(s) 89, 567, 570
BceAI ACGGC 1 cut(s) 106
BciT130I CCWGG 2 cut(s) 312, 405
BcoDI GTCTC 3 cut(s) 61, 884, 896
BcuI ACTAGT 1 cut(s) 998
BfaI CTAG 3 cut(s) 390, 513, 999
BfmI CTRYAG 1 cut(s) 966
BfuAI ACCTGC 2 cut(s) 232, 517
BglII AGATCT 1 cut(s) 1046
BisI GCNGC 3 cut(s) 70, 529, 969
BlsI GCNGC 3 cut(s) 71, 530, 970
Bme1390I CCNGG 2 cut(s) 312, 405
Bme18I GGWCC 1 cut(s) 789
BmgT120I GGNCC 3 cut(s) 78, 225, 789
BmiI GGNNCC 5 cut(s) 94, 175, 271, 790, 1161
BmrFI CCNGG 2 cut(s) 312, 405
BmsI GCATC 2 cut(s) 117, 141
BpmI CTGGAG 1 cut(s) 999
BpuEI CTTGAG 1 cut(s) 1139
BsaHI GRCGYC 1 cut(s) 363
BsaJI CCNNGG 2 cut(s) 28, 177
Bsc4I CCNNNNNNNGG 1 cut(s) 34
Bse1I ACTGG 1 cut(s) 935
Bse3DI GCAATG 1 cut(s) 523
BseBI CCWGG 2 cut(s) 312, 405
BseDI CCNNGG 2 cut(s) 28, 177
BseGI GGATG 3 cut(s) 578, 582, 603
BseLI CCNNNNNNNGG 1 cut(s) 34
BseMI GCAATG 1 cut(s) 523
BseMII CTCAG 1 cut(s) 465
BseNI ACTGG 1 cut(s) 935
BseXI GCAGC 2 cut(s) 540, 980
BsgI GTGCAG 1 cut(s) 29
Bsh1285I CGRYCG 1 cut(s) 541
BshFI GGCC 3 cut(s) 72, 79, 226
BshNI GGYRCC 2 cut(s) 92, 173
BsiEI CGRYCG 1 cut(s) 541
BslFI GGGAC 1 cut(s) 196
BslI CCNNNNNNNGG 1 cut(s) 34
BsmAI GTCTC 3 cut(s) 61, 884, 896
BsmFI GGGAC 1 cut(s) 196
BsnI GGCC 3 cut(s) 72, 79, 226
Bsp143I GATC 4 cut(s) 220, 400, 1046, 1122
Bsp19I CCATGG 1 cut(s) 28
BspACI CCGC 5 cut(s) 69, 151, 537, 848, 1156
BspANI GGCC 3 cut(s) 72, 79, 226
BspCNI CTCAG 1 cut(s) 466
BspLI GGNNCC 5 cut(s) 94, 175, 271, 790, 1161
BspMAI CTGCAG 1 cut(s) 970
BspMI ACCTGC 2 cut(s) 232, 517
BspPI GGATC 1 cut(s) 395
BspT107I GGYRCC 2 cut(s) 92, 173
BsrDI GCAATG 1 cut(s) 523
BsrI ACTGG 1 cut(s) 935
BssECI CCNNGG 2 cut(s) 28, 177
BssMI GATC 4 cut(s) 220, 400, 1046, 1122
BssNI GRCGYC 1 cut(s) 363
BssT1I CCWWGG 2 cut(s) 28, 177
Bst2UI CCWGG 2 cut(s) 312, 405
Bst4CI ACNGT 4 cut(s) 412, 661, 724, 777
BstACI GRCGYC 1 cut(s) 363
BstAPI GCANNNNNTGC 1 cut(s) 534
BstC8I GCNNGC 1 cut(s) 553
BstDEI CTNAG 3 cut(s) 280, 474, 519
BstDSI CCRYGG 1 cut(s) 28
BstEII GGTNACC 1 cut(s) 860
BstF5I GGATG 3 cut(s) 578, 582, 603
BstKTI GATC 4 cut(s) 223, 403, 1049, 1125
BstMAI GTCTC 3 cut(s) 61, 884, 896
BstMBI GATC 4 cut(s) 220, 400, 1046, 1122
BstMCI CGRYCG 1 cut(s) 541
BstMWI GCNNNNNNNGC 4 cut(s) 534, 833, 965, 977
BstNI CCWGG 2 cut(s) 312, 405
BstNSI RCATGY 1 cut(s) 770
BstPI GGTNACC 1 cut(s) 860
BstSCI CCNGG 2 cut(s) 310, 403
BstSFI CTRYAG 1 cut(s) 966
BstV1I GCAGC 2 cut(s) 540, 980
BstX2I RGATCY 1 cut(s) 1046
BstXI CCANNNNNNTGG 1 cut(s) 569
BstYI RGATCY 1 cut(s) 1046
BsuRI GGCC 3 cut(s) 72, 79, 226
BtgI CCRYGG 1 cut(s) 28
BtsCI GGATG 3 cut(s) 578, 582, 603
BtsI GCAGTG 1 cut(s) 17
BtsIMutI CAGTG 3 cut(s) 17, 417, 782
BveI ACCTGC 2 cut(s) 232, 517
Cac8I GCNNGC 1 cut(s) 553
Cfr13I GGNCC 3 cut(s) 78, 225, 789
CseI GACGC 1 cut(s) 352
Csp6I GTAC 1 cut(s) 340
CviAII CATG 3 cut(s) 29, 767, 866
CviJI RGCY 8 cut(s) 16, 72, 79, 226, 315, 348, 393, 620
CviKI_1 RGCY 8 cut(s) 16, 72, 79, 226, 315, 348, 393, 620
CviQI GTAC 1 cut(s) 340
DdeI CTNAG 3 cut(s) 280, 474, 519
DpnI GATC 4 cut(s) 222, 402, 1048, 1124
DpnII GATC 4 cut(s) 220, 400, 1046, 1122
EaeI YGGCCR 1 cut(s) 70
Eco130I CCWWGG 2 cut(s) 28, 177
Eco47I GGWCC 1 cut(s) 789
Eco91I GGTNACC 1 cut(s) 860
EcoO109I RGGNCCY 1 cut(s) 789
EcoO65I GGTNACC 1 cut(s) 860
EcoRI GAATTC 1 cut(s) 742
EcoRII CCWGG 2 cut(s) 310, 403
EcoT14I CCWWGG 2 cut(s) 28, 177
ErhI CCWWGG 2 cut(s) 28, 177
FaeI CATG 3 cut(s) 32, 770, 869
FaqI GGGAC 1 cut(s) 196
FatI CATG 3 cut(s) 28, 766, 865
FauI CCCGC 2 cut(s) 841, 1149
FauNDI CATATG 1 cut(s) 533
Fnu4HI GCNGC 3 cut(s) 70, 529, 969
FokI GGATG 3 cut(s) 585, 589, 590
Fsp4HI GCNGC 3 cut(s) 70, 529, 969
FspBI CTAG 3 cut(s) 390, 513, 999
GluI GCNGC 3 cut(s) 70, 529, 969
GsuI CTGGAG 1 cut(s) 999
HaeIII GGCC 3 cut(s) 72, 79, 226
HgaI GACGC 1 cut(s) 352
Hin1I GRCGYC 1 cut(s) 363
Hin1II CATG 3 cut(s) 32, 770, 869
HindIII AAGCTT 1 cut(s) 346
HinfI GANTC 1 cut(s) 193
HphI GGTGA 2 cut(s) 338, 753
Hpy166II GTNNAC 2 cut(s) 334, 996
Hpy188I TCNGA 6 cut(s) 400, 421, 475, 813, 1043, 1110
Hpy188III TCNNGA 3 cut(s) 1016, 1118, 1139
Hpy8I GTNNAC 2 cut(s) 334, 996
Hpy99I CGWCG 3 cut(s) 92, 206, 368
HpyAV CCTTC 3 cut(s) 70, 307, 1139
HpyCH4III ACNGT 4 cut(s) 412, 661, 724, 777
HpyCH4IV ACGT 2 cut(s) 491, 1113
HpyF10VI GCNNNNNNNGC 4 cut(s) 534, 833, 965, 977
HpyF3I CTNAG 3 cut(s) 280, 474, 519
HpySE526I ACGT 2 cut(s) 491, 1113
Hsp92I GRCGYC 1 cut(s) 363
Hsp92II CATG 3 cut(s) 32, 770, 869
Kzo9I GATC 4 cut(s) 220, 400, 1046, 1122
Lsp1109I GCAGC 2 cut(s) 540, 980
LweI GCATC 2 cut(s) 117, 141
MaeI CTAG 3 cut(s) 390, 513, 999
MaeII ACGT 2 cut(s) 491, 1113
MaeIII GTNAC 2 cut(s) 37, 860
MalI GATC 4 cut(s) 222, 402, 1048, 1124
MboI GATC 4 cut(s) 220, 400, 1046, 1122
MboII GAAGA 7 cut(s) 76, 285, 343, 1056, 1070, 1120, 1154
MfeI CAATTG 1 cut(s) 666
MflI RGATCY 1 cut(s) 1046
MluCI AATT 9 cut(s) 234, 498, 583, 666, 675, 690, 698, 742, 1165
MmeI TCCRAC 1 cut(s) 127
MnlI CCTC 6 cut(s) 74, 131, 260, 930, 1023, 1060
MseI TTAA 6 cut(s) 386, 674, 693, 842, 1077, 1168
MslI CAYNNNNRTG 1 cut(s) 567
MspA1I CMGCKG 1 cut(s) 151
MspR9I CCNGG 2 cut(s) 312, 405
MunI CAATTG 1 cut(s) 666
MvaI CCWGG 2 cut(s) 312, 405
MwoI GCNNNNNNNGC 4 cut(s) 534, 833, 965, 977
NcoI CCATGG 1 cut(s) 28
NdeI CATATG 1 cut(s) 533
NdeII GATC 4 cut(s) 220, 400, 1046, 1122
NlaIII CATG 3 cut(s) 32, 770, 869
NlaIV GGNNCC 5 cut(s) 94, 175, 271, 790, 1161
NspI RCATGY 1 cut(s) 770
PciI ACATGT 1 cut(s) 766
PcsI WCGNNNNNNNCGW 3 cut(s) 135, 360, 1062
PfeI GAWTC 1 cut(s) 193
PflMI CCANNNNNTGG 1 cut(s) 34
PfoI TCCNGGA 1 cut(s) 403
PkrI GCNGC 3 cut(s) 71, 530, 970
PpuMI RGGWCCY 1 cut(s) 789
PscI ACATGT 1 cut(s) 766
Psp1406I AACGTT 1 cut(s) 1113
Psp5II RGGWCCY 1 cut(s) 789
Psp6I CCWGG 2 cut(s) 310, 403
PspEI GGTNACC 1 cut(s) 860
PspGI CCWGG 2 cut(s) 310, 403
PspN4I GGNNCC 5 cut(s) 94, 175, 271, 790, 1161
PspPI GGNCC 3 cut(s) 78, 225, 789
PspPPI RGGWCCY 1 cut(s) 789
PstI CTGCAG 1 cut(s) 970
PsuI RGATCY 1 cut(s) 1046
RsaI GTAC 1 cut(s) 341
RsaNI GTAC 1 cut(s) 340
RseI CAYNNNNRTG 1 cut(s) 567
SaqAI TTAA 6 cut(s) 386, 674, 693, 842, 1077, 1168
SatI GCNGC 3 cut(s) 70, 529, 969
Sau3AI GATC 4 cut(s) 220, 400, 1046, 1122
Sau96I GGNCC 3 cut(s) 78, 225, 789
ScrFI CCNGG 2 cut(s) 312, 405
SfaNI GCATC 2 cut(s) 117, 141
SfcI CTRYAG 1 cut(s) 966
SinI GGWCC 1 cut(s) 789
SmiMI CAYNNNNRTG 1 cut(s) 567
SmlI CTYRAG 1 cut(s) 1118
SmoI CTYRAG 1 cut(s) 1118
SpeI ACTAGT 1 cut(s) 998
Sse9I AATT 9 cut(s) 234, 498, 583, 666, 675, 690, 698, 742, 1165
SsiI CCGC 5 cut(s) 69, 151, 537, 848, 1156
SspMI CTAG 3 cut(s) 390, 513, 999
StyD4I CCNGG 2 cut(s) 310, 403
StyI CCWWGG 2 cut(s) 28, 177
TaaI ACNGT 4 cut(s) 412, 661, 724, 777
TaiI ACGT 2 cut(s) 494, 1116
TaqI TCGA 4 cut(s) 87, 204, 1056, 1065
TasI AATT 9 cut(s) 234, 498, 583, 666, 675, 690, 698, 742, 1165
TauI GCSGC 1 cut(s) 72
TfiI GAWTC 1 cut(s) 193
Tru1I TTAA 6 cut(s) 386, 674, 693, 842, 1077, 1168
Tru9I TTAA 6 cut(s) 386, 674, 693, 842, 1077, 1168
TscAI CASTG 3 cut(s) 17, 417, 782
TseI GCWGC 2 cut(s) 528, 968
TspDTI ATGAA 2 cut(s) 593, 735
TspGWI ACGGA 1 cut(s) 190
TspRI CASTG 3 cut(s) 17, 417, 782
Van91I CCANNNNNTGG 1 cut(s) 34
VpaK11BI GGWCC 1 cut(s) 789
XapI RAATTY 3 cut(s) 498, 698, 742
XceI RCATGY 1 cut(s) 770
XcmI CCANNNNNNNNNTGG 2 cut(s) 155, 1023
XspI CTAG 3 cut(s) 390, 513, 999
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.