FvH4_6g04920

Belongs to the DHHC palmitoyltransferase family

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
fragaria_vesca
Fvb6
OG0006568
Physical Location & Seq
Reverse (-)
2718835 .. 2725473
6639 bp
Loading structure...
UTR
Exon/CDS
Intron
FvH4_6g04920.t2

Sequence Viewer

Length: 1182 bp
ATGGGCGTACAGTGGCTTCTGGTGTGTCATGGTTTACTTACTCTACTTGTCTTGGTCTCTTTCCTCTGCGGCAATTGGCCCATCTTCGACGGCACTCCAATCCAACGCATCAATCACTTCCTCACCTTCGGCATCTGCGATTACTTCCAGCGGTTTGTTGGGTTTGTGTTTGGGGCGAAGGGGACCAATGCGATTCAGACTGTCGAGTATTTCTGCTGTGATCGACCCAATCCAACTTTGCAGGTTATATATCTTGCTATTATTGGAGGAACCTATTACTTAGTTGCAACTTCTTCCTTTCATTATATTCCTGGCTATTATATAGGTGAAGTCCATAGGTACATAAGCTTCTTGGCTGTTGGTGTCGGTGTTCTGCTATTTCTATTAACTAGCCTTTCCGATCCGGGAACAGTGAATTCTGATAATGTTTCAGATTATCTCTCTGCTTACCCGTATGACAATGTGATATATAATGAGAAAGAATGTTCAACTTGCAAAATTCCAAAACCTGCGAGGTCTAAGCATTGCAGCATATGTGGTCGCTGTGTTGCTCGCTTTGACCATCATTGTGGATGGATGAATAATTGTATAGGTGAGAGAAACATCCATTACTTCATGGCTTTTCTTTTGTGGCACACTTTACTCTGCATATATGGAACAGTTGCCGTTGGGTTAATTCTAGCTGGTCAAGTTAGAGAATTTAGAGTTATTGATATTCTAATTGTTTATTATCGTGTAGAGAATTCATTTATTAGTTTATCACCACATGTAATACAGTGGTTGGTGGGGGCATACAATACTCAAATACTACTGATGATGTTTCTTGCAATAGTGGCATTGTTAATCGCGGGTTTCTTTGGTTACCATGCAAAACTCTGTCTCACAAATACTACCACCAACGAGACTTTCAAGTGGCAAGACTATATAAACTGGCAGCGGAAGCTGAGTGAAGCAAAGGCGAGTTCTGCAGCACTCAAAGCAAGTATTAATGGGATAACTAGTGAAAGAAAACCTCCAGAGAGCAAATGGAGAACCCTATTCCGAAGATCTCCACTCGAAGATGTCGAGGTTGTGGTTAAGAATAACATTTATGATAAAGGGTTCTTTCAGAATTTTCTTGAGATCATCTTCCCCCTATCGAGAAGAAGGGTGTATGCCAACACCAAATTAAAGTCTGGCTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
DHHC

Protein Analysis

394

Amino Acids

44.77

Weight (kDa)

8.83

Isoelectric Point (pI)

30.83

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
DHHC PF01529 158 - 240 2.7e-31 DHHC palmitoyltransferase
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc36I ACCTGC 2 cut(s) 232, 517
AccII CGCG 1 cut(s) 848
AciI CCGC 4 cut(s) 69, 151, 848, 937
AclWI GGATC 1 cut(s) 395
AcsI RAATTY 5 cut(s) 415, 498, 698, 742, 1111
AfaI GTAC 2 cut(s) 9, 341
AflIII ACRYGT 1 cut(s) 766
AgsI TTSAA 2 cut(s) 489, 910
AhlI ACTAGT 1 cut(s) 998
AjnI CCWGG 1 cut(s) 310
AjuI GAANNNNNNNTTGG 2 cut(s) 890, 922
AluBI AGCT 3 cut(s) 348, 683, 943
AluI AGCT 3 cut(s) 348, 683, 943
Alw26I GTCTC 3 cut(s) 61, 884, 896
AlwI GGATC 1 cut(s) 395
AoxI GGCC 1 cut(s) 77
ApeKI GCWGC 3 cut(s) 528, 934, 968
ApoI RAATTY 5 cut(s) 415, 498, 698, 742, 1111
AseI ATTAAT 1 cut(s) 987
AspS9I GGNCC 2 cut(s) 78, 183
AsuC2I CCSGG 1 cut(s) 405
AsuHPI GGTGA 4 cut(s) 115, 338, 605, 753
AvaII GGWCC 1 cut(s) 183
BarI GAAGNNNNNNTAC 3 cut(s) 32, 332, 364
BbvI GCAGC 3 cut(s) 540, 946, 980
BccI CCATC 3 cut(s) 89, 567, 570
BceAI ACGGC 2 cut(s) 106, 650
BciT130I CCWGG 1 cut(s) 312
BcnI CCSGG 1 cut(s) 405
BcoDI GTCTC 3 cut(s) 61, 884, 896
BcuI ACTAGT 1 cut(s) 998
BfaI CTAG 3 cut(s) 390, 680, 999
BfmI CTRYAG 1 cut(s) 966
BfuAI ACCTGC 2 cut(s) 232, 517
BglII AGATCT 1 cut(s) 1046
BisI GCNGC 4 cut(s) 70, 529, 935, 969
BlsI GCNGC 4 cut(s) 71, 530, 936, 970
Bme1390I CCNGG 2 cut(s) 312, 405
Bme18I GGWCC 1 cut(s) 183
BmgT120I GGNCC 2 cut(s) 78, 183
BmiI GGNNCC 2 cut(s) 184, 271
BmrFI CCNGG 2 cut(s) 312, 405
BmsI GCATC 2 cut(s) 117, 141
BpmI CTGGAG 1 cut(s) 999
BpuEI CTTGAG 1 cut(s) 1139
BpuMI CCSGG 1 cut(s) 405
BsaI GGTCTC 1 cut(s) 61
Bse1I ACTGG 1 cut(s) 935
Bse3DI GCAATG 1 cut(s) 523
BseBI CCWGG 1 cut(s) 312
BseGI GGATG 3 cut(s) 578, 582, 603
BseMI GCAATG 1 cut(s) 523
BseMII CTCAG 1 cut(s) 935
BseNI ACTGG 1 cut(s) 935
BseXI GCAGC 3 cut(s) 540, 946, 980
Bsh1236I CGCG 1 cut(s) 848
BshFI GGCC 1 cut(s) 79
BsiSI CCGG 1 cut(s) 404
BslFI GGGAC 1 cut(s) 196
BsmAI GTCTC 3 cut(s) 61, 884, 896
BsmFI GGGAC 1 cut(s) 196
BsnI GGCC 1 cut(s) 79
Bso31I GGTCTC 1 cut(s) 61
Bsp143I GATC 4 cut(s) 220, 400, 1046, 1122
BspACI CCGC 4 cut(s) 69, 151, 848, 937
BspANI GGCC 1 cut(s) 79
BspCNI CTCAG 1 cut(s) 936
BspFNI CGCG 1 cut(s) 848
BspLI GGNNCC 2 cut(s) 184, 271
BspMAI CTGCAG 1 cut(s) 970
BspMI ACCTGC 2 cut(s) 232, 517
BspPI GGATC 1 cut(s) 395
BspTNI GGTCTC 1 cut(s) 61
BsrDI GCAATG 1 cut(s) 523
BsrI ACTGG 1 cut(s) 935
BssMI GATC 4 cut(s) 220, 400, 1046, 1122
Bst2UI CCWGG 1 cut(s) 312
Bst4CI ACNGT 5 cut(s) 12, 202, 412, 661, 777
BstC8I GCNNGC 1 cut(s) 553
BstDEI CTNAG 3 cut(s) 280, 519, 944
BstEII GGTNACC 1 cut(s) 860
BstF5I GGATG 3 cut(s) 578, 582, 603
BstFNI CGCG 1 cut(s) 848
BstKTI GATC 4 cut(s) 223, 403, 1049, 1125
BstMAI GTCTC 3 cut(s) 61, 884, 896
BstMBI GATC 4 cut(s) 220, 400, 1046, 1122
BstMWI GCNNNNNNNGC 4 cut(s) 833, 940, 965, 977
BstNI CCWGG 1 cut(s) 312
BstNSI RCATGY 1 cut(s) 770
BstPI GGTNACC 1 cut(s) 860
BstSCI CCNGG 2 cut(s) 310, 403
BstSFI CTRYAG 1 cut(s) 966
BstUI CGCG 1 cut(s) 848
BstV1I GCAGC 3 cut(s) 540, 946, 980
BstX2I RGATCY 1 cut(s) 1046
BstXI CCANNNNNNTGG 1 cut(s) 569
BstYI RGATCY 1 cut(s) 1046
BsuRI GGCC 1 cut(s) 79
BtsCI GGATG 3 cut(s) 578, 582, 603
BtsIMutI CAGTG 3 cut(s) 17, 417, 782
BveI ACCTGC 2 cut(s) 232, 517
Cac8I GCNNGC 1 cut(s) 553
Cfr13I GGNCC 2 cut(s) 78, 183
Csp6I GTAC 2 cut(s) 8, 340
CviAII CATG 4 cut(s) 29, 616, 767, 866
CviQI GTAC 2 cut(s) 8, 340
DdeI CTNAG 3 cut(s) 280, 519, 944
DpnI GATC 4 cut(s) 222, 402, 1048, 1124
DpnII GATC 4 cut(s) 220, 400, 1046, 1122
Eco31I GGTCTC 1 cut(s) 61
Eco47I GGWCC 1 cut(s) 183
Eco91I GGTNACC 1 cut(s) 860
EcoO65I GGTNACC 1 cut(s) 860
EcoRI GAATTC 2 cut(s) 415, 742
EcoRII CCWGG 1 cut(s) 310
FaeI CATG 4 cut(s) 32, 619, 770, 869
FaqI GGGAC 1 cut(s) 196
FatI CATG 4 cut(s) 28, 615, 766, 865
FauI CCCGC 1 cut(s) 841
FauNDI CATATG 1 cut(s) 533
Fnu4HI GCNGC 4 cut(s) 70, 529, 935, 969
FokI GGATG 3 cut(s) 585, 589, 590
Fsp4HI GCNGC 4 cut(s) 70, 529, 935, 969
FspBI CTAG 3 cut(s) 390, 680, 999
GluI GCNGC 4 cut(s) 70, 529, 935, 969
GsuI CTGGAG 1 cut(s) 999
HaeIII GGCC 1 cut(s) 79
HapII CCGG 1 cut(s) 404
Hin1II CATG 4 cut(s) 32, 619, 770, 869
HindIII AAGCTT 1 cut(s) 346
HinfI GANTC 1 cut(s) 193
HpaII CCGG 1 cut(s) 404
HphI GGTGA 4 cut(s) 115, 338, 605, 753
Hpy166II GTNNAC 1 cut(s) 35
Hpy188I TCNGA 6 cut(s) 198, 400, 421, 433, 1043, 1110
Hpy188III TCNNGA 3 cut(s) 1016, 1118, 1140
Hpy8I GTNNAC 1 cut(s) 35
Hpy99I CGWCG 1 cut(s) 92
HpyAV CCTTC 3 cut(s) 136, 172, 1140
HpyCH4III ACNGT 5 cut(s) 12, 202, 412, 661, 777
HpyCH4V TGCA 8 cut(s) 241, 287, 495, 528, 648, 827, 869, 968
HpyF10VI GCNNNNNNNGC 4 cut(s) 833, 940, 965, 977
HpyF3I CTNAG 3 cut(s) 280, 519, 944
Hsp92II CATG 4 cut(s) 32, 619, 770, 869
Kzo9I GATC 4 cut(s) 220, 400, 1046, 1122
Lsp1109I GCAGC 3 cut(s) 540, 946, 980
LweI GCATC 2 cut(s) 117, 141
MaeI CTAG 3 cut(s) 390, 680, 999
MaeIII GTNAC 1 cut(s) 860
MalI GATC 4 cut(s) 222, 402, 1048, 1124
MboI GATC 4 cut(s) 220, 400, 1046, 1122
MboII GAAGA 6 cut(s) 76, 285, 1056, 1070, 1120, 1155
MfeI CAATTG 1 cut(s) 73
MflI RGATCY 1 cut(s) 1046
MmeI TCCRAC 2 cut(s) 127, 257
MnlI CCTC 6 cut(s) 74, 131, 260, 507, 1023, 1060
MseI TTAA 6 cut(s) 386, 674, 842, 987, 1077, 1169
MslI CAYNNNNRTG 1 cut(s) 567
MspA1I CMGCKG 2 cut(s) 151, 937
MspI CCGG 1 cut(s) 404
MspR9I CCNGG 2 cut(s) 312, 405
MunI CAATTG 1 cut(s) 73
MvaI CCWGG 1 cut(s) 312
MvnI CGCG 1 cut(s) 848
MwoI GCNNNNNNNGC 4 cut(s) 833, 940, 965, 977
NciI CCSGG 1 cut(s) 405
NdeI CATATG 1 cut(s) 533
NdeII GATC 4 cut(s) 220, 400, 1046, 1122
NlaIII CATG 4 cut(s) 32, 619, 770, 869
NlaIV GGNNCC 2 cut(s) 184, 271
NspI RCATGY 1 cut(s) 770
PciI ACATGT 1 cut(s) 766
PcsI WCGNNNNNNNCGW 2 cut(s) 135, 1062
PfeI GAWTC 1 cut(s) 193
PfoI TCCNGGA 1 cut(s) 403
PkrI GCNGC 4 cut(s) 71, 530, 936, 970
PscI ACATGT 1 cut(s) 766
PshBI ATTAAT 1 cut(s) 987
Psp6I CCWGG 1 cut(s) 310
PspEI GGTNACC 1 cut(s) 860
PspGI CCWGG 1 cut(s) 310
PspN4I GGNNCC 2 cut(s) 184, 271
PspPI GGNCC 2 cut(s) 78, 183
PstI CTGCAG 1 cut(s) 970
PsuI RGATCY 1 cut(s) 1046
RsaI GTAC 2 cut(s) 9, 341
RsaNI GTAC 2 cut(s) 8, 340
RseI CAYNNNNRTG 1 cut(s) 567
SaqAI TTAA 6 cut(s) 386, 674, 842, 987, 1077, 1169
SatI GCNGC 4 cut(s) 70, 529, 935, 969
Sau3AI GATC 4 cut(s) 220, 400, 1046, 1122
Sau96I GGNCC 2 cut(s) 78, 183
ScrFI CCNGG 2 cut(s) 312, 405
SfaNI GCATC 2 cut(s) 117, 141
SfcI CTRYAG 1 cut(s) 966
SinI GGWCC 1 cut(s) 183
SmiMI CAYNNNNRTG 1 cut(s) 567
SmlI CTYRAG 1 cut(s) 1118
SmoI CTYRAG 1 cut(s) 1118
SpeI ACTAGT 1 cut(s) 998
SsiI CCGC 4 cut(s) 69, 151, 848, 937
SspMI CTAG 3 cut(s) 390, 680, 999
StyD4I CCNGG 2 cut(s) 310, 403
TaaI ACNGT 5 cut(s) 12, 202, 412, 661, 777
TaqI TCGA 6 cut(s) 87, 204, 223, 1056, 1065, 1139
TauI GCSGC 1 cut(s) 72
TfiI GAWTC 1 cut(s) 193
Tru1I TTAA 6 cut(s) 386, 674, 842, 987, 1077, 1169
Tru9I TTAA 6 cut(s) 386, 674, 842, 987, 1077, 1169
TscAI CASTG 3 cut(s) 17, 417, 782
TseI GCWGC 3 cut(s) 528, 934, 968
TspDTI ATGAA 4 cut(s) 290, 593, 604, 735
TspRI CASTG 3 cut(s) 17, 417, 782
VpaK11BI GGWCC 1 cut(s) 183
VspI ATTAAT 1 cut(s) 987
XapI RAATTY 5 cut(s) 415, 498, 698, 742, 1111
XceI RCATGY 1 cut(s) 770
XcmI CCANNNNNNNNNTGG 2 cut(s) 155, 1023
XspI CTAG 3 cut(s) 390, 680, 999
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.