Basic Information

Type: gene

Biological Identity

Species

rosa_rugosa

Chromosome

GWHBQTZ00000002

Orthogroup ID

OG0006568

Physical Location & Seq

Genomic Coordinates Forward (+)

75794013 .. 75796619

Gene Structure 2607 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rorug02G0648800.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1464 bp

ATGTATAAGAACCAGCTGCAGGAGCTTGCACAGAGAAGCTGTTTCAACCTGCCTTCATATTCTTGCATCATAGAAGGACCAAATCATGCACCAAGATTCAAAGCTTCTGTTAACTTCAACGGTGAGATCTTCGACAGCCCAAACTACTGCACCACACTGAGACAAGCAGAGCATTCTGCTGCTGAAGTAGCCGTCAATGTTCTTTCCACTAGAGGCCCTTCAAGGTCTTTAACTGCAAGAGTTCTTGATGAAACTGGAATATACAAAAACCTGCTTCAAGAAACTGCTCGCAGAGCTGGGCTGAAGCTGCCTGTATACACTATTGTGAGATCAGGGCCAGGGCATGTCCCAACTTTCACTTGTAGTGTAGAGCTTGCTGGCATGAATTTTAATGGGGAGGCAGCAAAGACCAAGAAGCAAGCTGAAAAGAATGCAGCAATTGCTGCCTGGTCTGCTTTGAAAAGAATCTCACTGGTGACAAACAAAGAAGGAGAGAGTAGTGGTGATCAAGAACAGCAGGAGCAAGCAGTTGTGACAAGGCTGCTCTCAAATTTTAGACTCTCAAACAAAGAAGACCATAGCAGACAGTTGAGGAGGAGACCAGATCATCAAACTCAAGCAAGGAGAAGAACTGTGAGGGGTGCTCATAATCATAGTCATAGTTATAGGGACAACAATGCCTCCACCTCCACAAACTCTCTAGTACAGAACCTACAGCATTGGAGGCTCATAGATGATCTGTTAACGGATTTGGTTCCTCGAGTTTCAAGTAATTCACAGAAACAAAGCAGCTTTGCGTCTCTTCTCCCTCCACCGCCACCGCGAAAGGAGTCCAAGATTTTGCCACCAATAGTTACACTCAACAAATCAAACAATTCCTCCTACTACAATTCCAGTTATAATAGGCCTATTCCTGTCCAAATGAGGGGTAGTGGTAGATCACAGGTTGTTCCACCTCCATTGGAAGACCACCAAAAGGATGAGGAAGAATGGCTTGGTACAAAGTCAGATAGCTTGATCAGTAAGATGCCCAATACTGAAAAGGAAGGTCATAGTCGTAGCCCTAGTAATTATTTTTCAAATCCAAGGAGTCCTGTATTTGGTTCCAGTGTTGCACACATCAGGCAATTTCCAATGTCCCCAAATCCAGTTACGGCACCAACTACTAGTGCAAGTGCAAGTTCAAGTTCAAGTTCCCTCCTGGGCAGAAGAAGCATGTACACTCAAGGGTTCAATCCTTACAGTCATAGGGTTGCCCCAGCAGTTCATATCAGATCGGTGATTCCTGTTTGTGCAGCACCATCTGTAGCAGTGAGGCCCTTAGTAGTAACTCCATCAAACCCACCACCATTACCAATATTACCAAGAATGAAAGAAACTTGTAGTACCAGTCCCAGTCCTGGTACTAGTGCTAGTACTAGTTCACAACCAGCAGCAGTAGCAGTCCTGAAATTAAGAGAGTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

DHHC

Protein Analysis

487

Amino Acids

53.47

Weight (kDa)

9.94

Isoelectric Point (pI)

67.85

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
dsrm	PF00035	2 - 68	5.7e-14	Double-stranded RNA binding motif
dsrm	PF00035	88 - 152	1.2e-15	Double-stranded RNA binding motif

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0006568)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G04970 AT3G04970 AT3G04970
fragaria_vesca	FvH4_6g04920 FvH4_6g04920 FvH4_6g04920 FvH4_6g04920 FvH4_6g04920 FvH4_6g04920
malus_domestica	MD04G1213200.v1.1 MD12G1227400.v1.1
prunus_persica	Prupe.6G333100_v2.0.a1
pyrus_communis	pycom04g18880 pycom12g21220
rosa_chinensis	RchiOBHm_Chr3g0453421
rosa_laevigata	RLG00000025516
rosa_multiflora	Rmu_sc0000510.1_g000004 Rmu_sc0010297.1_g000001
rosa_roxburghii	Rroxscaffold_6G00430390
rosa_rugosa	Rorug02G0648800 Rorug02G0648800
rosa_samantha	Rh3AG051700 Rh3BG053100 Rh3CG052400 Rh3DG053200
rosa_wichuraiana	Rw3G003970

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	900
Acc36I	ACCTGC	2 cut(s)	57, 279
AccB1I	GGYRCC	1 cut(s)	1156
AccI	GTMKAC	1 cut(s)	315
AccII	CGCG	1 cut(s)	823
AciI	CCGC	2 cut(s)	815, 821
AcsI	RAATTY	2 cut(s)	385, 550
AcuI	CTGAAG	2 cut(s)	204, 323
AfaI	GTAC	6 cut(s)	705, 1000, 1220, 1387, 1405, 1417
AfiI	CCNNNNNNNGG	5 cut(s)	19, 925, 976, 1100, 1400
AhlI	ACTAGT	3 cut(s)	1166, 1406, 1418
AjnI	CCWGG	4 cut(s)	337, 446, 1200, 1399
AjuI	GAANNNNNNNTTGG	2 cut(s)	978, 1010
AleI	CACNNNNGTG	1 cut(s)	323
Alw21I	GWGCWC	1 cut(s)	646
Alw26I	GTCTC	3 cut(s)	154, 592, 804
Ama87I	CYCGRG	1 cut(s)	759
AoxI	GGCC	4 cut(s)	214, 335, 905, 1316
ApoI	RAATTY	2 cut(s)	385, 550
AspS9I	GGNCC	4 cut(s)	77, 215, 335, 1317
AsuHPI	GGTGA	4 cut(s)	134, 487, 515, 1291
AvaI	CYCGRG	1 cut(s)	759
AvaII	GGWCC	1 cut(s)	77
BanI	GGYRCC	1 cut(s)	1156
BbsI	GAAGAC	2 cut(s)	579, 972
Bbv12I	GWGCWC	1 cut(s)	646
BccI	CCATC	2 cut(s)	1309, 1342
BceAI	ACGGC	2 cut(s)	176, 1170
BciT130I	CCWGG	4 cut(s)	339, 448, 1202, 1401
BclI	TGATCA	2 cut(s)	505, 1017
BcoDI	GTCTC	3 cut(s)	154, 592, 804
BcuI	ACTAGT	3 cut(s)	1166, 1406, 1418
BfaI	CTAG	7 cut(s)	210, 701, 1065, 1167, 1407, 1413, 1419
BfmI	CTRYAG	3 cut(s)	17, 713, 1305
BfuAI	ACCTGC	2 cut(s)	57, 279
BglII	AGATCT	1 cut(s)	126
BmcAI	AGTACT	1 cut(s)	1417
Bme1390I	CCNGG	4 cut(s)	339, 448, 1202, 1401
Bme18I	GGWCC	1 cut(s)	77
BmeT110I	CYCGRG	1 cut(s)	759
BmgT120I	GGNCC	4 cut(s)	77, 215, 335, 1317
BmiI	GGNNCC	3 cut(s)	756, 1105, 1158
BmrFI	CCNGG	4 cut(s)	339, 448, 1202, 1401
BmrI	ACTGGG	1 cut(s)	1389
BmsI	GCATC	2 cut(s)	75, 1017
BmuI	ACTGGG	1 cut(s)	1389
BpiI	GAAGAC	2 cut(s)	579, 972
BplI	GAGNNNNNCTC	2 cut(s)	628, 660
BpuEI	CTTGAG	2 cut(s)	600, 1209
BsaI	GGTCTC	1 cut(s)	592
BsaJI	CCNNGG	3 cut(s)	338, 1085, 1201
BsaXI	ACNNNNNCTCC	4 cut(s)	665, 695, 863, 893
Bsc4I	CCNNNNNNNGG	5 cut(s)	19, 925, 976, 1100, 1400
Bse1I	ACTGG	7 cut(s)	259, 477, 894, 1107, 1148, 1389, 1395
BseBI	CCWGG	4 cut(s)	339, 448, 1202, 1401
BseDI	CCNNGG	3 cut(s)	338, 1085, 1201
BseGI	GGATG	1 cut(s)	985
BseLI	CCNNNNNNNGG	5 cut(s)	19, 925, 976, 1100, 1400
BseMII	CTCAG	1 cut(s)	149
BseNI	ACTGG	7 cut(s)	259, 477, 894, 1107, 1148, 1389, 1395
BseRI	GAGGAG	2 cut(s)	607, 610
BseYI	CCCAGC	2 cut(s)	296, 1258
BsgI	GTGCAG	2 cut(s)	133, 1314
Bsh1236I	CGCG	1 cut(s)	823
BshFI	GGCC	4 cut(s)	216, 337, 907, 1318
BshNI	GGYRCC	1 cut(s)	1156
BsiHKAI	GWGCWC	1 cut(s)	646
BsiHKCI	CYCGRG	1 cut(s)	759
BslFI	GGGAC	4 cut(s)	332, 683, 1123, 1377
BslI	CCNNNNNNNGG	5 cut(s)	19, 925, 976, 1100, 1400
BsmAI	GTCTC	3 cut(s)	154, 592, 804
BsmBI	CGTCTC	1 cut(s)	804
BsmFI	GGGAC	4 cut(s)	332, 683, 1123, 1377
BsmI	GAATGC	2 cut(s)	172, 436
BsnI	GGCC	4 cut(s)	216, 337, 907, 1318
Bso31I	GGTCTC	1 cut(s)	592
BsoBI	CYCGRG	1 cut(s)	759
Bsp1286I	GDGCHC	1 cut(s)	646
Bsp1407I	TGTACA	1 cut(s)	1218
Bsp143I	GATC	8 cut(s)	126, 329, 505, 604, 736, 938, 1017, 1274
BspACI	CCGC	2 cut(s)	815, 821
BspANI	GGCC	4 cut(s)	216, 337, 907, 1318
BspCNI	CTCAG	1 cut(s)	150
BspFNI	CGCG	1 cut(s)	823
BspLI	GGNNCC	3 cut(s)	756, 1105, 1158
BspMAI	CTGCAG	1 cut(s)	21
BspMI	ACCTGC	2 cut(s)	57, 279
BspT107I	GGYRCC	1 cut(s)	1156
BspTNI	GGTCTC	1 cut(s)	592
BsrGI	TGTACA	1 cut(s)	1218
BsrI	ACTGG	7 cut(s)	259, 477, 894, 1107, 1148, 1389, 1395
BssECI	CCNNGG	3 cut(s)	338, 1085, 1201
BssMI	GATC	8 cut(s)	126, 329, 505, 604, 736, 938, 1017, 1274
BssNAI	GTATAC	1 cut(s)	316
BssT1I	CCWWGG	1 cut(s)	1085
Bst1107I	GTATAC	1 cut(s)	316
Bst2UI	CCWGG	4 cut(s)	339, 448, 1202, 1401
Bst4CI	ACNGT	4 cut(s)	122, 588, 634, 1244
Bst6I	CTCTTC	1 cut(s)	807
BstAPI	GCANNNNNTGC	2 cut(s)	440, 443
BstAUI	TGTACA	1 cut(s)	1218
BstC8I	GCNNGC	6 cut(s)	27, 289, 375, 379, 420, 525
BstDEI	CTNAG	2 cut(s)	158, 1321
BstF5I	GGATG	1 cut(s)	985
BstFNI	CGCG	1 cut(s)	823
BstKTI	GATC	8 cut(s)	129, 332, 508, 607, 739, 941, 1020, 1277
BstMAI	GTCTC	3 cut(s)	154, 592, 804
BstMBI	GATC	8 cut(s)	126, 329, 505, 604, 736, 938, 1017, 1274
BstNI	CCWGG	4 cut(s)	339, 448, 1202, 1401
BstNSI	RCATGY	2 cut(s)	347, 1219
BstSCI	CCNGG	4 cut(s)	337, 446, 1200, 1399
BstSFI	CTRYAG	3 cut(s)	17, 713, 1305
BstUI	CGCG	1 cut(s)	823
BstV2I	GAAGAC	2 cut(s)	579, 972
BstX2I	RGATCY	1 cut(s)	126
BstYI	RGATCY	1 cut(s)	126
BstZ17I	GTATAC	1 cut(s)	316
BsuRI	GGCC	4 cut(s)	216, 337, 907, 1318
BtsCI	GGATG	1 cut(s)	985
BtsI	GCAGTG	1 cut(s)	1317
BtsIMutI	CAGTG	4 cut(s)	155, 470, 1114, 1317
BveI	ACCTGC	2 cut(s)	57, 279
Cac8I	GCNNGC	6 cut(s)	27, 289, 375, 379, 420, 525
Cfr13I	GGNCC	4 cut(s)	77, 215, 335, 1317
CseI	GACGC	1 cut(s)	786
Csp6I	GTAC	6 cut(s)	704, 999, 1219, 1386, 1404, 1416
CspCI	CAANNNNNGTGG	2 cut(s)	942, 977
CviAII	CATG	4 cut(s)	86, 344, 382, 1216
CviQI	GTAC	6 cut(s)	704, 999, 1219, 1386, 1404, 1416
DdeI	CTNAG	2 cut(s)	158, 1321
DpnI	GATC	8 cut(s)	128, 331, 507, 606, 738, 940, 1019, 1276
DpnII	GATC	8 cut(s)	126, 329, 505, 604, 736, 938, 1017, 1274
Eam1104I	CTCTTC	1 cut(s)	807
EarI	CTCTTC	1 cut(s)	807
Eco130I	CCWWGG	1 cut(s)	1085
Eco147I	AGGCCT	1 cut(s)	907
Eco31I	GGTCTC	1 cut(s)	592
Eco47I	GGWCC	1 cut(s)	77
Eco57I	CTGAAG	2 cut(s)	204, 323
Eco88I	CYCGRG	1 cut(s)	759
EcoO109I	RGGNCCY	2 cut(s)	215, 1317
EcoRII	CCWGG	4 cut(s)	337, 446, 1200, 1399
EcoT14I	CCWWGG	1 cut(s)	1085
ErhI	CCWWGG	1 cut(s)	1085
Esp3I	CGTCTC	1 cut(s)	804
FaeI	CATG	4 cut(s)	89, 347, 385, 1219
FalI	AAGNNNNNCTT	2 cut(s)	978, 1010
FaqI	GGGAC	4 cut(s)	332, 683, 1123, 1377
FatI	CATG	4 cut(s)	85, 343, 381, 1215
FbaI	TGATCA	2 cut(s)	505, 1017
FblI	GTMKAC	1 cut(s)	315
FokI	GGATG	1 cut(s)	992
FspBI	CTAG	7 cut(s)	210, 701, 1065, 1167, 1407, 1413, 1419
GsaI	CCCAGC	2 cut(s)	300, 1262
HaeIII	GGCC	4 cut(s)	216, 337, 907, 1318
HgaI	GACGC	1 cut(s)	786
Hin1II	CATG	4 cut(s)	89, 347, 385, 1219
HincII	GTYRAC	2 cut(s)	112, 744
HindII	GTYRAC	2 cut(s)	112, 744
HindIII	AAGCTT	1 cut(s)	102
HinfI	GANTC	6 cut(s)	96, 465, 558, 830, 1090, 1282
HpaI	GTTAAC	2 cut(s)	112, 744
HphI	GGTGA	4 cut(s)	134, 487, 515, 1291
Hpy166II	GTNNAC	5 cut(s)	112, 316, 744, 1221, 1424
Hpy188I	TCNGA	2 cut(s)	1009, 1274
Hpy188III	TCNNGA	4 cut(s)	245, 278, 509, 1447
Hpy8I	GTNNAC	5 cut(s)	112, 316, 744, 1221, 1424
HpyAV	CCTTC	5 cut(s)	63, 68, 228, 482, 1040
HpyCH4III	ACNGT	4 cut(s)	122, 588, 634, 1244
HpyF3I	CTNAG	2 cut(s)	158, 1321
Hsp92II	CATG	4 cut(s)	89, 347, 385, 1219
Ksp22I	TGATCA	2 cut(s)	505, 1017
KspAI	GTTAAC	2 cut(s)	112, 744
Kzo9I	GATC	8 cut(s)	126, 329, 505, 604, 736, 938, 1017, 1274
LmnI	GCTCC	2 cut(s)	22, 520
LweI	GCATC	2 cut(s)	75, 1017
MaeI	CTAG	7 cut(s)	210, 701, 1065, 1167, 1407, 1413, 1419
MaeIII	GTNAC	5 cut(s)	475, 532, 853, 1150, 1327
MalI	GATC	8 cut(s)	128, 331, 507, 606, 738, 940, 1019, 1276
MboI	GATC	8 cut(s)	126, 329, 505, 604, 736, 938, 1017, 1274
MboII	GAAGA	7 cut(s)	121, 584, 639, 794, 977, 998, 1221
MfeI	CAATTG	1 cut(s)	438
MflI	RGATCY	1 cut(s)	126
MhlI	GDGCHC	1 cut(s)	646
MluCI	AATT	9 cut(s)	385, 438, 550, 772, 874, 889, 1069, 1127, 1451
MlyI	GAGTC	3 cut(s)	552, 839, 1099
MseI	TTAA	5 cut(s)	111, 230, 390, 743, 1454
MslI	CAYNNNNRTG	1 cut(s)	323
MspA1I	CMGCKG	1 cut(s)	16
MspR9I	CCNGG	4 cut(s)	339, 448, 1202, 1401
MunI	CAATTG	1 cut(s)	438
Mva1269I	GAATGC	2 cut(s)	172, 436
MvaI	CCWGG	4 cut(s)	339, 448, 1202, 1401
MvnI	CGCG	1 cut(s)	823
NdeII	GATC	8 cut(s)	126, 329, 505, 604, 736, 938, 1017, 1274
NlaIII	CATG	4 cut(s)	89, 347, 385, 1219
NlaIV	GGNNCC	3 cut(s)	756, 1105, 1158
NmuCI	GTSAC	2 cut(s)	475, 532
NspI	RCATGY	2 cut(s)	347, 1219
OliI	CACNNNNGTG	1 cut(s)	323
PaeR7I	CTCGAG	1 cut(s)	759
PceI	AGGCCT	1 cut(s)	907
PctI	GAATGC	2 cut(s)	172, 436
PfeI	GAWTC	3 cut(s)	96, 465, 1282
PleI	GAGTC	3 cut(s)	552, 838, 1098
PpsI	GAGTC	3 cut(s)	552, 838, 1098
PsiI	TTATAA	1 cut(s)	900
Psp6I	CCWGG	4 cut(s)	337, 446, 1200, 1399
PspFI	CCCAGC	2 cut(s)	296, 1258
PspGI	CCWGG	4 cut(s)	337, 446, 1200, 1399
PspN4I	GGNNCC	3 cut(s)	756, 1105, 1158
PspPI	GGNCC	4 cut(s)	77, 215, 335, 1317
PspXI	VCTCGAGB	1 cut(s)	759
PstI	CTGCAG	1 cut(s)	21
PsuI	RGATCY	1 cut(s)	126
PvuII	CAGCTG	1 cut(s)	16
RsaI	GTAC	6 cut(s)	705, 1000, 1220, 1387, 1405, 1417
RsaNI	GTAC	6 cut(s)	704, 999, 1219, 1386, 1404, 1416
RseI	CAYNNNNRTG	1 cut(s)	323
SaqAI	TTAA	5 cut(s)	111, 230, 390, 743, 1454
Sau3AI	GATC	8 cut(s)	126, 329, 505, 604, 736, 938, 1017, 1274
Sau96I	GGNCC	4 cut(s)	77, 215, 335, 1317
ScaI	AGTACT	1 cut(s)	1417
SchI	GAGTC	3 cut(s)	552, 839, 1099
ScrFI	CCNGG	4 cut(s)	339, 448, 1202, 1401
SduI	GDGCHC	1 cut(s)	646
SfaNI	GCATC	2 cut(s)	75, 1017
SfcI	CTRYAG	3 cut(s)	17, 713, 1305
Sfr274I	CTCGAG	1 cut(s)	759
SinI	GGWCC	1 cut(s)	77
SlaI	CTCGAG	1 cut(s)	759
SmiMI	CAYNNNNRTG	1 cut(s)	323
SmlI	CTYRAG	3 cut(s)	615, 759, 1224
SmoI	CTYRAG	3 cut(s)	615, 759, 1224
SpeI	ACTAGT	3 cut(s)	1166, 1406, 1418
Sse9I	AATT	9 cut(s)	385, 438, 550, 772, 874, 889, 1069, 1127, 1451
SseBI	AGGCCT	1 cut(s)	907
SsiI	CCGC	2 cut(s)	815, 821
SspI	AATATT	1 cut(s)	1359
SspMI	CTAG	7 cut(s)	210, 701, 1065, 1167, 1407, 1413, 1419
StuI	AGGCCT	1 cut(s)	907
StyD4I	CCNGG	4 cut(s)	337, 446, 1200, 1399
StyI	CCWWGG	1 cut(s)	1085
TaaI	ACNGT	4 cut(s)	122, 588, 634, 1244
TaqI	TCGA	2 cut(s)	132, 760
TasI	AATT	9 cut(s)	385, 438, 550, 772, 874, 889, 1069, 1127, 1451
TatI	WGTACW	3 cut(s)	703, 1218, 1415
TfiI	GAWTC	3 cut(s)	96, 465, 1282
Tru1I	TTAA	5 cut(s)	111, 230, 390, 743, 1454
Tru9I	TTAA	5 cut(s)	111, 230, 390, 743, 1454
TscAI	CASTG	4 cut(s)	162, 477, 1114, 1317
TseFI	GTSAC	2 cut(s)	475, 532
Tsp45I	GTSAC	2 cut(s)	475, 532
TspDTI	ATGAA	5 cut(s)	45, 264, 398, 1256, 1385
TspGWI	ACGGA	1 cut(s)	761
TspRI	CASTG	4 cut(s)	162, 477, 1114, 1317
VpaK11BI	GGWCC	1 cut(s)	77
XapI	RAATTY	2 cut(s)	385, 550
XceI	RCATGY	2 cut(s)	347, 1219
XhoI	CTCGAG	1 cut(s)	759
XmiI	GTMKAC	1 cut(s)	315
XspI	CTAG	7 cut(s)	210, 701, 1065, 1167, 1407, 1413, 1419
ZrmI	AGTACT	1 cut(s)	1417

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.