RchiOBHm_Chr3g0453421

Belongs to the DHHC palmitoyltransferase family

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_chinensis
3
OG0006568
Physical Location & Seq
Reverse (-)
3860243 .. 3864768
4526 bp
Loading structure...
UTR
Exon/CDS
Intron
PRQ42050

Sequence Viewer

Length: 1182 bp
ATGGGTGTGCAGTGGCTTCTGGTGTGCCATGGTTTGGTTACTCTACTCGTCTTAGTCTCCTTCCTCTGCGGCCAATGGCCCATCTTCGACGGCACCCCTATCCAACGCATCAATCACTTCCTCCACTTCGGCATCTGCGATTACTTCCAGCGGTTCGTTGGGTTTGTGTTTGGTGCCAAGGGGACTAATGCGATTCAGTCCGTCGAGTATTTCTGCTGTGATCGGCCCAATCCAATTTTGCAGGTCTTATATCTTGCTATTATTGGAGGAACCTATTACTTAGTTGCAACTTCTTCCTTCCGTTATATTCCTGGCTATTATATAGGTGAAGTTCACAGGTACATAAGCTTCTTCGCTGTTGGCGTCGGTGTTCTGCTGTTTCTATTAACTAGCCTTTCCGATCCAGGAACAGTGAAGTCTGATAATGTTTCAGTTTATCTCTCTGCTTACCCGTATGACAATGTGATATATTCTGAGAAAGAATGTTCAACATGCAAAATTCTAAAACCTGCTAGGTCTAAGCATTGCAGCATATGTGGTCGCTGTGTTGCTCGCTTTGACCATCATTGTGGATGGATGAATAATTGTATAGGCGAGAGAAACATCCATTACTTTATGGCTTTTCTTTTGTGGCACACTTTACTTTGCATATATGGAGCAGTTGCCATCGGGTTAATTCTTGCTGGACAAGTTAAAGAATTTAGAGTTATTGATATTCTAACTGTTTATTATGGTGTACAGAATTCATTTGTTAGTTTATCACCACATGTTATACAGTGGTTGGTAGGGGCATACAACACTCAAATACTACTGATGATGTTTCTTGCAATAGTGGCATTGTTAATCGCGGGTTTCTTTGGTTACCATGCAAAACTCTGTCTTACAAATACTACTACTAATGAGACTTTCAAGTGGCAAGACTATATAAACTGGCAGAGGAAGCTGAGTGAAGCAAGGGCGAGTTCTGCAGCACTCAAAGCAAGTATAAATGGCCTCACTAATGAAAGAAAACCCCCAGAGAGCAAATGGAGAACCATATTCCGAAGATCTCCACTCGAAGATGTCGAGGTTGTGGTTAAGAATAACATTTATGATAAAGGATTCTTTCTGAATGTTCTTGAGATCATCTTCCCCCTATCGAGAAGAAGGTTGTATGCAAACACCAAATTAAAGTCCGGCTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
DHHC

Protein Analysis

393

Amino Acids

44.68

Weight (kDa)

9.03

Isoelectric Point (pI)

31.88

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
DHHC PF01529 158 - 306 3.8e-37 DHHC palmitoyltransferase
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc36I ACCTGC 2 cut(s) 232, 517
AccB1I GGYRCC 2 cut(s) 92, 173
AccB7I CCANNNNNTGG 1 cut(s) 34
AccII CGCG 1 cut(s) 848
AciI CCGC 3 cut(s) 69, 151, 848
AclWI GGATC 1 cut(s) 395
AcoI YGGCCR 1 cut(s) 70
AcsI RAATTY 3 cut(s) 498, 698, 742
AcyI GRCGYC 1 cut(s) 363
AfaI GTAC 2 cut(s) 341, 738
AfiI CCNNNNNNNGG 1 cut(s) 34
AflIII ACRYGT 1 cut(s) 766
AgsI TTSAA 2 cut(s) 489, 910
AjnI CCWGG 2 cut(s) 310, 403
AluBI AGCT 2 cut(s) 348, 943
AluI AGCT 2 cut(s) 348, 943
Alw26I GTCTC 2 cut(s) 61, 896
AlwI GGATC 1 cut(s) 395
AoxI GGCC 4 cut(s) 70, 77, 224, 991
ApeKI GCWGC 2 cut(s) 528, 968
ApoI RAATTY 3 cut(s) 498, 698, 742
AspS9I GGNCC 2 cut(s) 78, 225
AsuHPI GGTGA 2 cut(s) 338, 753
BanI GGYRCC 2 cut(s) 92, 173
BarI GAAGNNNNNNTAC 2 cut(s) 332, 364
BbvI GCAGC 2 cut(s) 540, 980
BccI CCATC 4 cut(s) 89, 567, 570, 674
BceAI ACGGC 1 cut(s) 106
BciT130I CCWGG 2 cut(s) 312, 405
BcoDI GTCTC 2 cut(s) 61, 896
BfaI CTAG 2 cut(s) 390, 513
BfmI CTRYAG 1 cut(s) 966
BfuAI ACCTGC 2 cut(s) 232, 517
BglII AGATCT 1 cut(s) 1046
BisI GCNGC 3 cut(s) 70, 529, 969
BlsI GCNGC 3 cut(s) 71, 530, 970
Bme1390I CCNGG 2 cut(s) 312, 405
BmgT120I GGNCC 2 cut(s) 78, 225
BmiI GGNNCC 3 cut(s) 94, 175, 271
BmrFI CCNGG 2 cut(s) 312, 405
BmsI GCATC 2 cut(s) 117, 141
BpuEI CTTGAG 1 cut(s) 1139
BsaHI GRCGYC 1 cut(s) 363
BsaJI CCNNGG 2 cut(s) 28, 177
Bsc4I CCNNNNNNNGG 1 cut(s) 34
Bse1I ACTGG 1 cut(s) 935
Bse3DI GCAATG 1 cut(s) 523
BseBI CCWGG 2 cut(s) 312, 405
BseDI CCNNGG 2 cut(s) 28, 177
BseGI GGATG 3 cut(s) 578, 582, 603
BseLI CCNNNNNNNGG 1 cut(s) 34
BseMI GCAATG 1 cut(s) 523
BseMII CTCAG 2 cut(s) 465, 935
BseNI ACTGG 1 cut(s) 935
BseXI GCAGC 2 cut(s) 540, 980
BsgI GTGCAG 1 cut(s) 29
Bsh1236I CGCG 1 cut(s) 848
BshFI GGCC 4 cut(s) 72, 79, 226, 993
BshNI GGYRCC 2 cut(s) 92, 173
BsiSI CCGG 1 cut(s) 1176
BslFI GGGAC 1 cut(s) 196
BslI CCNNNNNNNGG 1 cut(s) 34
BsmAI GTCTC 2 cut(s) 61, 896
BsmFI GGGAC 1 cut(s) 196
BsnI GGCC 4 cut(s) 72, 79, 226, 993
Bsp1407I TGTACA 1 cut(s) 736
Bsp143I GATC 4 cut(s) 220, 400, 1046, 1122
Bsp19I CCATGG 1 cut(s) 28
BspACI CCGC 3 cut(s) 69, 151, 848
BspANI GGCC 4 cut(s) 72, 79, 226, 993
BspCNI CTCAG 2 cut(s) 466, 936
BspFNI CGCG 1 cut(s) 848
BspLI GGNNCC 3 cut(s) 94, 175, 271
BspMAI CTGCAG 1 cut(s) 970
BspMI ACCTGC 2 cut(s) 232, 517
BspPI GGATC 1 cut(s) 395
BspT107I GGYRCC 2 cut(s) 92, 173
BsrDI GCAATG 1 cut(s) 523
BsrGI TGTACA 1 cut(s) 736
BsrI ACTGG 1 cut(s) 935
BssECI CCNNGG 2 cut(s) 28, 177
BssMI GATC 4 cut(s) 220, 400, 1046, 1122
BssNI GRCGYC 1 cut(s) 363
BssT1I CCWWGG 2 cut(s) 28, 177
Bst2UI CCWGG 2 cut(s) 312, 405
Bst4CI ACNGT 3 cut(s) 412, 724, 777
BstACI GRCGYC 1 cut(s) 363
BstAUI TGTACA 1 cut(s) 736
BstC8I GCNNGC 1 cut(s) 553
BstDEI CTNAG 5 cut(s) 52, 280, 474, 519, 944
BstDSI CCRYGG 1 cut(s) 28
BstEII GGTNACC 1 cut(s) 860
BstF5I GGATG 3 cut(s) 578, 582, 603
BstFNI CGCG 1 cut(s) 848
BstKTI GATC 4 cut(s) 223, 403, 1049, 1125
BstMAI GTCTC 2 cut(s) 61, 896
BstMBI GATC 4 cut(s) 220, 400, 1046, 1122
BstMWI GCNNNNNNNGC 4 cut(s) 833, 940, 965, 977
BstNI CCWGG 2 cut(s) 312, 405
BstNSI RCATGY 2 cut(s) 495, 770
BstPI GGTNACC 1 cut(s) 860
BstSCI CCNGG 2 cut(s) 310, 403
BstSFI CTRYAG 1 cut(s) 966
BstUI CGCG 1 cut(s) 848
BstV1I GCAGC 2 cut(s) 540, 980
BstX2I RGATCY 1 cut(s) 1046
BstXI CCANNNNNNTGG 1 cut(s) 569
BstYI RGATCY 1 cut(s) 1046
BsuRI GGCC 4 cut(s) 72, 79, 226, 993
BtgI CCRYGG 1 cut(s) 28
BtsCI GGATG 3 cut(s) 578, 582, 603
BtsI GCAGTG 1 cut(s) 17
BtsIMutI CAGTG 3 cut(s) 17, 417, 782
BveI ACCTGC 2 cut(s) 232, 517
Cac8I GCNNGC 1 cut(s) 553
Cfr13I GGNCC 2 cut(s) 78, 225
CseI GACGC 1 cut(s) 352
Csp6I GTAC 2 cut(s) 340, 737
CviAII CATG 4 cut(s) 29, 492, 767, 866
CviQI GTAC 2 cut(s) 340, 737
DdeI CTNAG 5 cut(s) 52, 280, 474, 519, 944
DpnI GATC 4 cut(s) 222, 402, 1048, 1124
DpnII GATC 4 cut(s) 220, 400, 1046, 1122
EaeI YGGCCR 1 cut(s) 70
Eco130I CCWWGG 2 cut(s) 28, 177
Eco91I GGTNACC 1 cut(s) 860
EcoO65I GGTNACC 1 cut(s) 860
EcoRI GAATTC 1 cut(s) 742
EcoRII CCWGG 2 cut(s) 310, 403
EcoT14I CCWWGG 2 cut(s) 28, 177
ErhI CCWWGG 2 cut(s) 28, 177
FaeI CATG 4 cut(s) 32, 495, 770, 869
FaqI GGGAC 1 cut(s) 196
FatI CATG 4 cut(s) 28, 491, 766, 865
FauI CCCGC 1 cut(s) 841
FauNDI CATATG 1 cut(s) 533
Fnu4HI GCNGC 3 cut(s) 70, 529, 969
FokI GGATG 3 cut(s) 585, 589, 590
Fsp4HI GCNGC 3 cut(s) 70, 529, 969
FspBI CTAG 2 cut(s) 390, 513
GluI GCNGC 3 cut(s) 70, 529, 969
HaeIII GGCC 4 cut(s) 72, 79, 226, 993
HapII CCGG 1 cut(s) 1176
HgaI GACGC 1 cut(s) 352
Hin1I GRCGYC 1 cut(s) 363
Hin1II CATG 4 cut(s) 32, 495, 770, 869
HindIII AAGCTT 1 cut(s) 346
HinfI GANTC 2 cut(s) 193, 1101
HpaII CCGG 1 cut(s) 1176
HphI GGTGA 2 cut(s) 338, 753
Hpy166II GTNNAC 2 cut(s) 334, 737
Hpy188I TCNGA 5 cut(s) 400, 421, 475, 1043, 1110
Hpy188III TCNNGA 2 cut(s) 1118, 1140
Hpy8I GTNNAC 2 cut(s) 334, 737
Hpy99I CGWCG 3 cut(s) 92, 206, 368
HpyAV CCTTC 3 cut(s) 70, 307, 1140
HpyCH4III ACNGT 3 cut(s) 412, 724, 777
HpyF10VI GCNNNNNNNGC 4 cut(s) 833, 940, 965, 977
HpyF3I CTNAG 5 cut(s) 52, 280, 474, 519, 944
Hsp92I GRCGYC 1 cut(s) 363
Hsp92II CATG 4 cut(s) 32, 495, 770, 869
Kzo9I GATC 4 cut(s) 220, 400, 1046, 1122
LmnI GCTCC 1 cut(s) 656
Lsp1109I GCAGC 2 cut(s) 540, 980
LweI GCATC 2 cut(s) 117, 141
MaeI CTAG 2 cut(s) 390, 513
MaeIII GTNAC 2 cut(s) 37, 860
MalI GATC 4 cut(s) 222, 402, 1048, 1124
MboI GATC 4 cut(s) 220, 400, 1046, 1122
MboII GAAGA 7 cut(s) 76, 285, 343, 1056, 1070, 1120, 1155
MflI RGATCY 1 cut(s) 1046
MluCI AATT 7 cut(s) 234, 498, 583, 675, 698, 742, 1166
MmeI TCCRAC 1 cut(s) 127
MnlI CCTC 6 cut(s) 74, 131, 260, 930, 1004, 1060
MseI TTAA 6 cut(s) 386, 674, 693, 842, 1077, 1169
MslI CAYNNNNRTG 1 cut(s) 567
MspA1I CMGCKG 1 cut(s) 151
MspI CCGG 1 cut(s) 1176
MspR9I CCNGG 2 cut(s) 312, 405
MvaI CCWGG 2 cut(s) 312, 405
MvnI CGCG 1 cut(s) 848
MwoI GCNNNNNNNGC 4 cut(s) 833, 940, 965, 977
NcoI CCATGG 1 cut(s) 28
NdeI CATATG 1 cut(s) 533
NdeII GATC 4 cut(s) 220, 400, 1046, 1122
NlaIII CATG 4 cut(s) 32, 495, 770, 869
NlaIV GGNNCC 3 cut(s) 94, 175, 271
NspI RCATGY 2 cut(s) 495, 770
PciI ACATGT 1 cut(s) 766
PcsI WCGNNNNNNNCGW 3 cut(s) 135, 360, 1062
PfeI GAWTC 2 cut(s) 193, 1101
PflMI CCANNNNNTGG 1 cut(s) 34
PfoI TCCNGGA 1 cut(s) 403
PkrI GCNGC 3 cut(s) 71, 530, 970
PscI ACATGT 1 cut(s) 766
Psp6I CCWGG 2 cut(s) 310, 403
PspEI GGTNACC 1 cut(s) 860
PspGI CCWGG 2 cut(s) 310, 403
PspN4I GGNNCC 3 cut(s) 94, 175, 271
PspPI GGNCC 2 cut(s) 78, 225
PstI CTGCAG 1 cut(s) 970
PsuI RGATCY 1 cut(s) 1046
RsaI GTAC 2 cut(s) 341, 738
RsaNI GTAC 2 cut(s) 340, 737
RseI CAYNNNNRTG 1 cut(s) 567
SaqAI TTAA 6 cut(s) 386, 674, 693, 842, 1077, 1169
SatI GCNGC 3 cut(s) 70, 529, 969
Sau3AI GATC 4 cut(s) 220, 400, 1046, 1122
Sau96I GGNCC 2 cut(s) 78, 225
ScrFI CCNGG 2 cut(s) 312, 405
SfaNI GCATC 2 cut(s) 117, 141
SfcI CTRYAG 1 cut(s) 966
SmiMI CAYNNNNRTG 1 cut(s) 567
SmlI CTYRAG 1 cut(s) 1118
SmoI CTYRAG 1 cut(s) 1118
Sse9I AATT 7 cut(s) 234, 498, 583, 675, 698, 742, 1166
SsiI CCGC 3 cut(s) 69, 151, 848
SspMI CTAG 2 cut(s) 390, 513
StyD4I CCNGG 2 cut(s) 310, 403
StyI CCWWGG 2 cut(s) 28, 177
TaaI ACNGT 3 cut(s) 412, 724, 777
TaqI TCGA 5 cut(s) 87, 204, 1056, 1065, 1139
TasI AATT 7 cut(s) 234, 498, 583, 675, 698, 742, 1166
TatI WGTACW 1 cut(s) 736
TauI GCSGC 1 cut(s) 72
TfiI GAWTC 2 cut(s) 193, 1101
Tru1I TTAA 6 cut(s) 386, 674, 693, 842, 1077, 1169
Tru9I TTAA 6 cut(s) 386, 674, 693, 842, 1077, 1169
TscAI CASTG 3 cut(s) 17, 417, 782
TseI GCWGC 2 cut(s) 528, 968
TspDTI ATGAA 3 cut(s) 593, 735, 1017
TspGWI ACGGA 2 cut(s) 190, 290
TspRI CASTG 3 cut(s) 17, 417, 782
Van91I CCANNNNNTGG 1 cut(s) 34
XapI RAATTY 3 cut(s) 498, 698, 742
XceI RCATGY 2 cut(s) 495, 770
XcmI CCANNNNNNNNNTGG 2 cut(s) 155, 1023
XspI CTAG 2 cut(s) 390, 513
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.