Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0000510.1

Orthogroup ID

OG0006568

Physical Location & Seq

Genomic Coordinates Reverse (-)

12361 .. 16207

Gene Structure 3847 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_sc0000510.1_g000004.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1182 bp

atgggtgtgcagtggcttctggtgtgccatggtttggttactctactcgtcttagtctccttcctctgcggccaatggcccatcttcgacggcacccctatccaacgcatcaatcacttcctccacttcggcatctgcgattacttccagcggttcgttgggtttgtgtttggtgccaaggggactaatgcgattcagtccgtcgagtatttctgctgtgatcggcccaatccaattttgcaggtcttatatcttgctattattggaggaacctattacttagttgcaacttcttccttccgttatattcctggctattatataggtgaagttcacaggtacataagcttcttcgctgttggcgttggtgttctgctgtttctattaactagcctttccgatccaggaacagtgaagtctgataatgtttcagtttatctctctgcttacccgtatgacaatgtgatatattctgagaaagaatgttcaacatgcaaaattctaaaacctgctaggtctaagcattgcagcatatgtggtcgctgtgttgctcgctttgaccatcattgtggatggatgaataattgtataggggagagaaacatccattactttatggcttttcttttgtggcacactttactctgcatatatggagcagttgccatcgggttaattcttgctggacaagttaaagaatttagagttattgatattctaactgtttattatggtgtaaagaattcatttgttagtttatcaccacatgttatacagtggttggtaggggcatacaacactcaaatactactgatgatgtttcttgcaatagtggcattgttaatcgcgggtttctttggttaccatgcaaaactctgtcttacaaatactactactaatgagactttcaagtggcaagactatataaactggcagaggaagctgagtgaagcaagggcgagttctgcagcactcaaagcaagtataaatggcctcactagtgaaagaaaacccccagagagcaaatggagaaccatattccgaagatctccacttgaagatgtcgaggttgtggttaagaataacatttatgataaaggattctttctgaatgttcttgagatcatcttccccctatcgagaagaaggttgtatgcaaacaccaaattaaagtccggctaa

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

DHHC

Protein Analysis

393

Amino Acids

44.65

Weight (kDa)

9.08

Isoelectric Point (pI)

32.68

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0006568)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G04970 AT3G04970 AT3G04970
fragaria_vesca	FvH4_6g04920 FvH4_6g04920 FvH4_6g04920 FvH4_6g04920 FvH4_6g04920 FvH4_6g04920
malus_domestica	MD04G1213200.v1.1 MD12G1227400.v1.1
prunus_persica	Prupe.6G333100_v2.0.a1
pyrus_communis	pycom04g18880 pycom12g21220
rosa_chinensis	RchiOBHm_Chr3g0453421
rosa_laevigata	RLG00000025516
rosa_multiflora	Rmu_sc0000510.1_g000004 Rmu_sc0010297.1_g000001
rosa_roxburghii	Rroxscaffold_6G00430390
rosa_rugosa	Rorug02G0648800 Rorug02G0648800
rosa_samantha	Rh3AG051700 Rh3BG053100 Rh3CG052400 Rh3DG053200
rosa_wichuraiana	Rw3G003970

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc36I	ACCTGC	2 cut(s)	232, 517
AccB1I	GGYRCC	2 cut(s)	92, 173
AccB7I	CCANNNNNTGG	1 cut(s)	34
AccII	CGCG	1 cut(s)	848
AciI	CCGC	3 cut(s)	69, 151, 848
AclWI	GGATC	1 cut(s)	395
AcoI	YGGCCR	1 cut(s)	70
AcsI	RAATTY	3 cut(s)	498, 698, 742
AfaI	GTAC	1 cut(s)	341
AfiI	CCNNNNNNNGG	1 cut(s)	34
AflIII	ACRYGT	1 cut(s)	766
AgsI	TTSAA	3 cut(s)	489, 910, 1058
AhlI	ACTAGT	1 cut(s)	998
AjnI	CCWGG	2 cut(s)	310, 403
AluBI	AGCT	2 cut(s)	348, 943
AluI	AGCT	2 cut(s)	348, 943
Alw26I	GTCTC	2 cut(s)	61, 896
AlwI	GGATC	1 cut(s)	395
AoxI	GGCC	4 cut(s)	70, 77, 224, 991
ApeKI	GCWGC	2 cut(s)	528, 968
ApoI	RAATTY	3 cut(s)	498, 698, 742
AspS9I	GGNCC	2 cut(s)	78, 225
AsuHPI	GGTGA	2 cut(s)	338, 753
BanI	GGYRCC	2 cut(s)	92, 173
BarI	GAAGNNNNNNTAC	2 cut(s)	332, 364
BbvI	GCAGC	2 cut(s)	540, 980
BccI	CCATC	4 cut(s)	89, 567, 570, 674
BceAI	ACGGC	1 cut(s)	106
BciT130I	CCWGG	2 cut(s)	312, 405
BcoDI	GTCTC	2 cut(s)	61, 896
BcuI	ACTAGT	1 cut(s)	998
BfaI	CTAG	3 cut(s)	390, 513, 999
BfmI	CTRYAG	1 cut(s)	966
BfuAI	ACCTGC	2 cut(s)	232, 517
BglII	AGATCT	1 cut(s)	1046
BisI	GCNGC	3 cut(s)	70, 529, 969
BlsI	GCNGC	3 cut(s)	71, 530, 970
Bme1390I	CCNGG	2 cut(s)	312, 405
BmgT120I	GGNCC	2 cut(s)	78, 225
BmiI	GGNNCC	3 cut(s)	94, 175, 271
BmrFI	CCNGG	2 cut(s)	312, 405
BmsI	GCATC	2 cut(s)	117, 141
BpuEI	CTTGAG	1 cut(s)	1139
BsaJI	CCNNGG	2 cut(s)	28, 177
Bsc4I	CCNNNNNNNGG	1 cut(s)	34
Bse1I	ACTGG	1 cut(s)	935
Bse3DI	GCAATG	1 cut(s)	523
BseBI	CCWGG	2 cut(s)	312, 405
BseDI	CCNNGG	2 cut(s)	28, 177
BseGI	GGATG	3 cut(s)	578, 582, 603
BseLI	CCNNNNNNNGG	1 cut(s)	34
BseMI	GCAATG	1 cut(s)	523
BseMII	CTCAG	2 cut(s)	465, 935
BseNI	ACTGG	1 cut(s)	935
BseXI	GCAGC	2 cut(s)	540, 980
BsgI	GTGCAG	1 cut(s)	29
Bsh1236I	CGCG	1 cut(s)	848
BshFI	GGCC	4 cut(s)	72, 79, 226, 993
BshNI	GGYRCC	2 cut(s)	92, 173
BsiSI	CCGG	1 cut(s)	1176
BslFI	GGGAC	1 cut(s)	196
BslI	CCNNNNNNNGG	1 cut(s)	34
BsmAI	GTCTC	2 cut(s)	61, 896
BsmFI	GGGAC	1 cut(s)	196
BsnI	GGCC	4 cut(s)	72, 79, 226, 993
Bsp143I	GATC	4 cut(s)	220, 400, 1046, 1122
Bsp19I	CCATGG	1 cut(s)	28
BspACI	CCGC	3 cut(s)	69, 151, 848
BspANI	GGCC	4 cut(s)	72, 79, 226, 993
BspCNI	CTCAG	2 cut(s)	466, 936
BspFNI	CGCG	1 cut(s)	848
BspLI	GGNNCC	3 cut(s)	94, 175, 271
BspMAI	CTGCAG	1 cut(s)	970
BspMI	ACCTGC	2 cut(s)	232, 517
BspPI	GGATC	1 cut(s)	395
BspT107I	GGYRCC	2 cut(s)	92, 173
BsrDI	GCAATG	1 cut(s)	523
BsrI	ACTGG	1 cut(s)	935
BssECI	CCNNGG	2 cut(s)	28, 177
BssMI	GATC	4 cut(s)	220, 400, 1046, 1122
BssT1I	CCWWGG	2 cut(s)	28, 177
Bst2UI	CCWGG	2 cut(s)	312, 405
Bst4CI	ACNGT	3 cut(s)	412, 724, 777
BstC8I	GCNNGC	1 cut(s)	553
BstDEI	CTNAG	5 cut(s)	52, 280, 474, 519, 944
BstDSI	CCRYGG	1 cut(s)	28
BstEII	GGTNACC	1 cut(s)	860
BstF5I	GGATG	3 cut(s)	578, 582, 603
BstFNI	CGCG	1 cut(s)	848
BstKTI	GATC	4 cut(s)	223, 403, 1049, 1125
BstMAI	GTCTC	2 cut(s)	61, 896
BstMBI	GATC	4 cut(s)	220, 400, 1046, 1122
BstMWI	GCNNNNNNNGC	4 cut(s)	833, 940, 965, 977
BstNI	CCWGG	2 cut(s)	312, 405
BstNSI	RCATGY	2 cut(s)	495, 770
BstPI	GGTNACC	1 cut(s)	860
BstSCI	CCNGG	2 cut(s)	310, 403
BstSFI	CTRYAG	1 cut(s)	966
BstUI	CGCG	1 cut(s)	848
BstV1I	GCAGC	2 cut(s)	540, 980
BstX2I	RGATCY	1 cut(s)	1046
BstXI	CCANNNNNNTGG	1 cut(s)	569
BstYI	RGATCY	1 cut(s)	1046
BsuRI	GGCC	4 cut(s)	72, 79, 226, 993
BtgI	CCRYGG	1 cut(s)	28
BtsCI	GGATG	3 cut(s)	578, 582, 603
BtsI	GCAGTG	1 cut(s)	17
BtsIMutI	CAGTG	3 cut(s)	17, 417, 782
BveI	ACCTGC	2 cut(s)	232, 517
Cac8I	GCNNGC	1 cut(s)	553
Cfr13I	GGNCC	2 cut(s)	78, 225
Csp6I	GTAC	1 cut(s)	340
CviAII	CATG	4 cut(s)	29, 492, 767, 866
CviQI	GTAC	1 cut(s)	340
DdeI	CTNAG	5 cut(s)	52, 280, 474, 519, 944
DpnI	GATC	4 cut(s)	222, 402, 1048, 1124
DpnII	GATC	4 cut(s)	220, 400, 1046, 1122
EaeI	YGGCCR	1 cut(s)	70
Eco130I	CCWWGG	2 cut(s)	28, 177
Eco91I	GGTNACC	1 cut(s)	860
EcoO65I	GGTNACC	1 cut(s)	860
EcoRI	GAATTC	1 cut(s)	742
EcoRII	CCWGG	2 cut(s)	310, 403
EcoT14I	CCWWGG	2 cut(s)	28, 177
ErhI	CCWWGG	2 cut(s)	28, 177
FaeI	CATG	4 cut(s)	32, 495, 770, 869
FaqI	GGGAC	1 cut(s)	196
FatI	CATG	4 cut(s)	28, 491, 766, 865
FauI	CCCGC	1 cut(s)	841
FauNDI	CATATG	1 cut(s)	533
Fnu4HI	GCNGC	3 cut(s)	70, 529, 969
FokI	GGATG	3 cut(s)	585, 589, 590
Fsp4HI	GCNGC	3 cut(s)	70, 529, 969
FspBI	CTAG	3 cut(s)	390, 513, 999
GluI	GCNGC	3 cut(s)	70, 529, 969
HaeIII	GGCC	4 cut(s)	72, 79, 226, 993
HapII	CCGG	1 cut(s)	1176
Hin1II	CATG	4 cut(s)	32, 495, 770, 869
HindIII	AAGCTT	1 cut(s)	346
HinfI	GANTC	2 cut(s)	193, 1101
HpaII	CCGG	1 cut(s)	1176
HphI	GGTGA	2 cut(s)	338, 753
Hpy166II	GTNNAC	1 cut(s)	334
Hpy188I	TCNGA	5 cut(s)	400, 421, 475, 1043, 1110
Hpy188III	TCNNGA	2 cut(s)	1118, 1140
Hpy8I	GTNNAC	1 cut(s)	334
Hpy99I	CGWCG	2 cut(s)	92, 206
HpyAV	CCTTC	3 cut(s)	70, 307, 1140
HpyCH4III	ACNGT	3 cut(s)	412, 724, 777
HpyF10VI	GCNNNNNNNGC	4 cut(s)	833, 940, 965, 977
HpyF3I	CTNAG	5 cut(s)	52, 280, 474, 519, 944
Hsp92II	CATG	4 cut(s)	32, 495, 770, 869
Kzo9I	GATC	4 cut(s)	220, 400, 1046, 1122
LmnI	GCTCC	1 cut(s)	656
Lsp1109I	GCAGC	2 cut(s)	540, 980
LweI	GCATC	2 cut(s)	117, 141
MaeI	CTAG	3 cut(s)	390, 513, 999
MaeIII	GTNAC	2 cut(s)	37, 860
MalI	GATC	4 cut(s)	222, 402, 1048, 1124
MboI	GATC	4 cut(s)	220, 400, 1046, 1122
MboII	GAAGA	7 cut(s)	76, 285, 343, 1056, 1070, 1120, 1155
MflI	RGATCY	1 cut(s)	1046
MluCI	AATT	7 cut(s)	234, 498, 583, 675, 698, 742, 1166
MmeI	TCCRAC	1 cut(s)	127
MnlI	CCTC	6 cut(s)	74, 131, 260, 930, 1004, 1060
MseI	TTAA	6 cut(s)	386, 674, 693, 842, 1077, 1169
MslI	CAYNNNNRTG	1 cut(s)	567
MspA1I	CMGCKG	1 cut(s)	151
MspI	CCGG	1 cut(s)	1176
MspR9I	CCNGG	2 cut(s)	312, 405
MvaI	CCWGG	2 cut(s)	312, 405
MvnI	CGCG	1 cut(s)	848
MwoI	GCNNNNNNNGC	4 cut(s)	833, 940, 965, 977
NcoI	CCATGG	1 cut(s)	28
NdeI	CATATG	1 cut(s)	533
NdeII	GATC	4 cut(s)	220, 400, 1046, 1122
NlaIII	CATG	4 cut(s)	32, 495, 770, 869
NlaIV	GGNNCC	3 cut(s)	94, 175, 271
NspI	RCATGY	2 cut(s)	495, 770
PciI	ACATGT	1 cut(s)	766
PcsI	WCGNNNNNNNCGW	2 cut(s)	135, 360
PfeI	GAWTC	2 cut(s)	193, 1101
PflMI	CCANNNNNTGG	1 cut(s)	34
PfoI	TCCNGGA	1 cut(s)	403
PkrI	GCNGC	3 cut(s)	71, 530, 970
PscI	ACATGT	1 cut(s)	766
Psp6I	CCWGG	2 cut(s)	310, 403
PspEI	GGTNACC	1 cut(s)	860
PspGI	CCWGG	2 cut(s)	310, 403
PspN4I	GGNNCC	3 cut(s)	94, 175, 271
PspPI	GGNCC	2 cut(s)	78, 225
PstI	CTGCAG	1 cut(s)	970
PsuI	RGATCY	1 cut(s)	1046
RsaI	GTAC	1 cut(s)	341
RsaNI	GTAC	1 cut(s)	340
RseI	CAYNNNNRTG	1 cut(s)	567
SaqAI	TTAA	6 cut(s)	386, 674, 693, 842, 1077, 1169
SatI	GCNGC	3 cut(s)	70, 529, 969
Sau3AI	GATC	4 cut(s)	220, 400, 1046, 1122
Sau96I	GGNCC	2 cut(s)	78, 225
ScrFI	CCNGG	2 cut(s)	312, 405
SfaNI	GCATC	2 cut(s)	117, 141
SfcI	CTRYAG	1 cut(s)	966
SmiMI	CAYNNNNRTG	1 cut(s)	567
SmlI	CTYRAG	1 cut(s)	1118
SmoI	CTYRAG	1 cut(s)	1118
SpeI	ACTAGT	1 cut(s)	998
Sse9I	AATT	7 cut(s)	234, 498, 583, 675, 698, 742, 1166
SsiI	CCGC	3 cut(s)	69, 151, 848
SspMI	CTAG	3 cut(s)	390, 513, 999
StyD4I	CCNGG	2 cut(s)	310, 403
StyI	CCWWGG	2 cut(s)	28, 177
TaaI	ACNGT	3 cut(s)	412, 724, 777
TaqI	TCGA	4 cut(s)	87, 204, 1065, 1139
TasI	AATT	7 cut(s)	234, 498, 583, 675, 698, 742, 1166
TauI	GCSGC	1 cut(s)	72
TfiI	GAWTC	2 cut(s)	193, 1101
Tru1I	TTAA	6 cut(s)	386, 674, 693, 842, 1077, 1169
Tru9I	TTAA	6 cut(s)	386, 674, 693, 842, 1077, 1169
TscAI	CASTG	3 cut(s)	17, 417, 782
TseI	GCWGC	2 cut(s)	528, 968
TspDTI	ATGAA	2 cut(s)	593, 735
TspGWI	ACGGA	2 cut(s)	190, 290
TspRI	CASTG	3 cut(s)	17, 417, 782
Van91I	CCANNNNNTGG	1 cut(s)	34
XapI	RAATTY	3 cut(s)	498, 698, 742
XceI	RCATGY	2 cut(s)	495, 770
XcmI	CCANNNNNNNNNTGG	2 cut(s)	155, 1023
XspI	CTAG	3 cut(s)	390, 513, 999

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.