Basic Information

Type: gene

Biological Identity

Species

pyrus_communis

Chromosome

Chr4

Orthogroup ID

OG0006568

Physical Location & Seq

Genomic Coordinates Forward (+)

20732726 .. 20736450

Gene Structure 3725 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

pycom04g18880.9

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1182 bp

ATGGAGGTACAGTGGATTCTGGTGTGCCATGGTTTAGTCACACTGCTCGTTCTAGTCTCCTTCCTCTGCGGCCAATGGCCCATCTTCGACGGCACCCCCATACAACGCATCAACCACTTCCTCACCTTCGGCGCCTACGATTACTTCCAACGGTTTGTTAGGTTTGTGTTTGGAGCCAGGGGTACTAATGCCATAGCCTCCGTGGAATATTTCTGCTGTGATCGACCCAATCCAATCTTACAGTTCATGTATCTTGCAATAGTAGGAGGAACCTATTACTTAGTTGCAACTTCTTCCTTCAGTTACATTCCTGGCTATTATATTAGTGAAATTCACAGGTATGCAAGCTTGTGGGCTGTTGGCGTTGGTGTTCTGCTCTTTCTCTTAGCTAGCTTTTCTGATCCAGGAACAATAAAGGCTGATAATGTTTCTCTGTATCTCTCTGCTTATCCCTATGATAATATTATATATTCTGAGAAACAATGTTCAACATGCAAAATTCCAAAACCTGCTAGGTCAAAGCATTGCAGCGTTTGTGATCGATGTGTTGCCCGTTTTGATCATCATTGTGGATGGATGAATAATTGTATAGGTGAGAGAAACACCCAGTACTTCGTAGCTTTTCTTTTGTGGCACACTTTACTTTGCATATATGGAACAGTGGCCATTGGGTTAATTCTTGCTGGACAAGTTAAAGAATACAAAGTTATTGAAATTCTAACTGCTTATTATGGTGTAGATAATTCTTTTCGCGGTTTAACACCACATGTTGTGCAGTGGTTGTTGGGGGACTACAACACTCAAATACTTCTTATGGTGTTTCTTGCAATAGTTGCACTGCTATTGGCAGGTTTCTTTGGTTACCATGCAAAACTTTGTCTCACAAACACTACCACTAATGAGACTTATAAGTGGCAAGACTACATGAGCTGGCAGACGAAGCTAAATGAAGCAAGGGCGAGTTCTGTGGCACTCAAAGCAAGTATCAGTGGGATAAGTAGTGAACGAAAACCTCCAGAGAGTAAATGGAGAGCCATGTTCCGAAGATCCCCACTCGAAGATGCAGAGGTTGTGGTTCAGAATAACATTTACGATAAAGGATTCTTCCAGAATATTCTCGAGGTCATTGTTCCCCTCTCGAGCAGACTGCATTCGTCTAGAACCAAATCAAAGTCTGGCTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

DHHC

Protein Analysis

394

Amino Acids

44.58

Weight (kDa)

8.68

Isoelectric Point (pI)

34.8

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0006568)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G04970 AT3G04970 AT3G04970
fragaria_vesca	FvH4_6g04920 FvH4_6g04920 FvH4_6g04920 FvH4_6g04920 FvH4_6g04920 FvH4_6g04920
malus_domestica	MD04G1213200.v1.1 MD12G1227400.v1.1
prunus_persica	Prupe.6G333100_v2.0.a1
pyrus_communis	pycom04g18880 pycom12g21220
rosa_chinensis	RchiOBHm_Chr3g0453421
rosa_laevigata	RLG00000025516
rosa_multiflora	Rmu_sc0000510.1_g000004 Rmu_sc0010297.1_g000001
rosa_roxburghii	Rroxscaffold_6G00430390
rosa_rugosa	Rorug02G0648800 Rorug02G0648800
rosa_samantha	Rh3AG051700 Rh3BG053100 Rh3CG052400 Rh3DG053200
rosa_wichuraiana	Rw3G003970

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	909
Acc36I	ACCTGC	2 cut(s)	517, 839
AccB1I	GGYRCC	2 cut(s)	92, 131
AccII	CGCG	1 cut(s)	753
AciI	CCGC	2 cut(s)	69, 753
AclWI	GGATC	2 cut(s)	395, 1041
AcoI	YGGCCR	2 cut(s)	70, 663
AcsI	RAATTY	3 cut(s)	330, 498, 714
AcuI	CTGAAG	1 cut(s)	283
AcyI	GRCGYC	1 cut(s)	132
AfaI	GTAC	3 cut(s)	9, 184, 611
AflIII	ACRYGT	1 cut(s)	766
AgsI	TTSAA	2 cut(s)	489, 713
AjnI	CCWGG	3 cut(s)	176, 310, 403
AluBI	AGCT	6 cut(s)	348, 389, 393, 620, 930, 943
AluI	AGCT	6 cut(s)	348, 389, 393, 620, 930, 943
Alw26I	GTCTC	3 cut(s)	61, 884, 896
AlwI	GGATC	2 cut(s)	395, 1041
Ama87I	CYCGRG	2 cut(s)	1118, 1138
AoxI	GGCC	3 cut(s)	70, 77, 663
ApeKI	GCWGC	1 cut(s)	528
ApoI	RAATTY	3 cut(s)	330, 498, 714
AspLEI	GCGC	1 cut(s)	134
AspS9I	GGNCC	1 cut(s)	78
AsuHPI	GGTGA	2 cut(s)	115, 605
AsuNHI	GCTAGC	1 cut(s)	389
AvaI	CYCGRG	2 cut(s)	1118, 1138
BalI	TGGCCA	1 cut(s)	665
BanI	GGYRCC	2 cut(s)	92, 131
BbvI	GCAGC	1 cut(s)	540
BccI	CCATC	2 cut(s)	89, 567
BceAI	ACGGC	1 cut(s)	106
BcgI	CGANNNNNNTGC	2 cut(s)	1129, 1163
BciT130I	CCWGG	3 cut(s)	178, 312, 405
BclI	TGATCA	1 cut(s)	559
BcoDI	GTCTC	3 cut(s)	61, 884, 896
BfaI	CTAG	4 cut(s)	53, 390, 513, 1158
BfoI	RGCGCY	1 cut(s)	135
BfuAI	ACCTGC	2 cut(s)	517, 839
BisI	GCNGC	2 cut(s)	70, 529
BlsI	GCNGC	2 cut(s)	71, 530
BmcAI	AGTACT	1 cut(s)	611
Bme1390I	CCNGG	3 cut(s)	178, 312, 405
BmeT110I	CYCGRG	2 cut(s)	1118, 1138
BmgT120I	GGNCC	1 cut(s)	78
BmiI	GGNNCC	4 cut(s)	94, 133, 175, 271
BmrFI	CCNGG	3 cut(s)	178, 312, 405
BmrI	ACTGGG	1 cut(s)	601
BmsI	GCATC	2 cut(s)	117, 1051
BmtI	GCTAGC	1 cut(s)	393
BmuI	ACTGGG	1 cut(s)	601
BpmI	CTGGAG	1 cut(s)	999
Bsa29I	ATCGAT	1 cut(s)	541
BsaHI	GRCGYC	1 cut(s)	132
BsaJI	CCNNGG	3 cut(s)	28, 177, 201
BsaXI	ACNNNNNCTCC	1 cut(s)	26
Bse1I	ACTGG	1 cut(s)	607
Bse3DI	GCAATG	1 cut(s)	523
BseBI	CCWGG	3 cut(s)	178, 312, 405
BseCI	ATCGAT	1 cut(s)	541
BseDI	CCNNGG	3 cut(s)	28, 177, 201
BseGI	GGATG	2 cut(s)	578, 582
BseMI	GCAATG	1 cut(s)	523
BseMII	CTCAG	1 cut(s)	465
BseNI	ACTGG	1 cut(s)	607
BseXI	GCAGC	1 cut(s)	540
BsgI	GTGCAG	1 cut(s)	794
Bsh1236I	CGCG	1 cut(s)	753
BshFI	GGCC	3 cut(s)	72, 79, 665
BshNI	GGYRCC	2 cut(s)	92, 131
BshVI	ATCGAT	1 cut(s)	541
BsiHKCI	CYCGRG	2 cut(s)	1118, 1138
BslFI	GGGAC	1 cut(s)	803
BsmAI	GTCTC	3 cut(s)	61, 884, 896
BsmFI	GGGAC	1 cut(s)	803
BsmI	GAATGC	1 cut(s)	1150
BsnI	GGCC	3 cut(s)	72, 79, 665
BsoBI	CYCGRG	2 cut(s)	1118, 1138
Bsp143I	GATC	5 cut(s)	220, 400, 538, 559, 1046
Bsp19I	CCATGG	1 cut(s)	28
BspACI	CCGC	2 cut(s)	69, 753
BspANI	GGCC	3 cut(s)	72, 79, 665
BspCNI	CTCAG	1 cut(s)	466
BspDI	ATCGAT	1 cut(s)	541
BspFNI	CGCG	1 cut(s)	753
BspLI	GGNNCC	4 cut(s)	94, 133, 175, 271
BspMI	ACCTGC	2 cut(s)	517, 839
BspOI	GCTAGC	1 cut(s)	393
BspPI	GGATC	2 cut(s)	395, 1041
BspT107I	GGYRCC	2 cut(s)	92, 131
BsrDI	GCAATG	1 cut(s)	523
BsrI	ACTGG	1 cut(s)	607
BssECI	CCNNGG	3 cut(s)	28, 177, 201
BssMI	GATC	5 cut(s)	220, 400, 538, 559, 1046
BssNI	GRCGYC	1 cut(s)	132
BssT1I	CCWWGG	1 cut(s)	28
Bst2UI	CCWGG	3 cut(s)	178, 312, 405
Bst4CI	ACNGT	4 cut(s)	12, 153, 243, 661
BstACI	GRCGYC	1 cut(s)	132
BstAPI	GCANNNNNTGC	1 cut(s)	833
BstC8I	GCNNGC	3 cut(s)	346, 391, 932
BstDEI	CTNAG	3 cut(s)	280, 385, 474
BstDSI	CCRYGG	2 cut(s)	28, 201
BstEII	GGTNACC	1 cut(s)	860
BstF5I	GGATG	2 cut(s)	578, 582
BstFNI	CGCG	1 cut(s)	753
BstH2I	RGCGCY	1 cut(s)	135
BstHHI	GCGC	1 cut(s)	134
BstKTI	GATC	5 cut(s)	223, 403, 541, 562, 1049
BstMAI	GTCTC	3 cut(s)	61, 884, 896
BstMBI	GATC	5 cut(s)	220, 400, 538, 559, 1046
BstMWI	GCNNNNNNNGC	3 cut(s)	833, 940, 977
BstNI	CCWGG	3 cut(s)	178, 312, 405
BstNSI	RCATGY	2 cut(s)	495, 770
BstPI	GGTNACC	1 cut(s)	860
BstSCI	CCNGG	3 cut(s)	176, 310, 403
BstUI	CGCG	1 cut(s)	753
BstV1I	GCAGC	1 cut(s)	540
BstX2I	RGATCY	1 cut(s)	1046
BstYI	RGATCY	1 cut(s)	1046
Bsu15I	ATCGAT	1 cut(s)	541
BsuRI	GGCC	3 cut(s)	72, 79, 665
BsuTUI	ATCGAT	1 cut(s)	541
BtgI	CCRYGG	2 cut(s)	28, 201
BtsCI	GGATG	2 cut(s)	578, 582
BtsI	GCAGTG	3 cut(s)	41, 782, 836
BtsIMutI	CAGTG	6 cut(s)	17, 41, 666, 782, 836, 994
BveI	ACCTGC	2 cut(s)	517, 839
Cac8I	GCNNGC	3 cut(s)	346, 391, 932
CfoI	GCGC	1 cut(s)	134
Cfr13I	GGNCC	1 cut(s)	78
ClaI	ATCGAT	1 cut(s)	541
Csp6I	GTAC	3 cut(s)	8, 183, 610
CviAII	CATG	7 cut(s)	29, 247, 492, 767, 866, 925, 1036
CviQI	GTAC	3 cut(s)	8, 183, 610
DdeI	CTNAG	3 cut(s)	280, 385, 474
DinI	GGCGCC	1 cut(s)	133
DpnI	GATC	5 cut(s)	222, 402, 540, 561, 1048
DpnII	GATC	5 cut(s)	220, 400, 538, 559, 1046
EaeI	YGGCCR	2 cut(s)	70, 663
Eco130I	CCWWGG	1 cut(s)	28
Eco57I	CTGAAG	1 cut(s)	283
Eco88I	CYCGRG	2 cut(s)	1118, 1138
Eco91I	GGTNACC	1 cut(s)	860
EcoO65I	GGTNACC	1 cut(s)	860
EcoRII	CCWGG	3 cut(s)	176, 310, 403
EcoT14I	CCWWGG	1 cut(s)	28
EgeI	GGCGCC	1 cut(s)	133
EheI	GGCGCC	1 cut(s)	133
ErhI	CCWWGG	1 cut(s)	28
FaeI	CATG	7 cut(s)	32, 250, 495, 770, 869, 928, 1039
FaqI	GGGAC	1 cut(s)	803
FatI	CATG	7 cut(s)	28, 246, 491, 766, 865, 924, 1035
FbaI	TGATCA	1 cut(s)	559
Fnu4HI	GCNGC	2 cut(s)	70, 529
FokI	GGATG	2 cut(s)	585, 589
Fsp4HI	GCNGC	2 cut(s)	70, 529
FspBI	CTAG	4 cut(s)	53, 390, 513, 1158
GlaI	GCGC	1 cut(s)	133
GluI	GCNGC	2 cut(s)	70, 529
GsuI	CTGGAG	1 cut(s)	999
HaeII	RGCGCY	1 cut(s)	135
HaeIII	GGCC	3 cut(s)	72, 79, 665
HhaI	GCGC	1 cut(s)	134
Hin1I	GRCGYC	1 cut(s)	132
Hin1II	CATG	7 cut(s)	32, 250, 495, 770, 869, 928, 1039
Hin6I	GCGC	1 cut(s)	132
HinP1I	GCGC	1 cut(s)	132
HindIII	AAGCTT	1 cut(s)	346
HinfI	GANTC	2 cut(s)	16, 1101
HphI	GGTGA	2 cut(s)	115, 605
Hpy166II	GTNNAC	1 cut(s)	1004
Hpy188I	TCNGA	4 cut(s)	400, 475, 1043, 1080
Hpy188III	TCNNGA	5 cut(s)	1016, 1108, 1118, 1138, 1158
Hpy8I	GTNNAC	1 cut(s)	1004
Hpy99I	CGWCG	1 cut(s)	92
HpyAV	CCTTC	3 cut(s)	70, 136, 307
HpyCH4III	ACNGT	4 cut(s)	12, 153, 243, 661
HpyF10VI	GCNNNNNNNGC	3 cut(s)	833, 940, 977
HpyF3I	CTNAG	3 cut(s)	280, 385, 474
Hsp92I	GRCGYC	1 cut(s)	132
Hsp92II	CATG	7 cut(s)	32, 250, 495, 770, 869, 928, 1039
HspAI	GCGC	1 cut(s)	132
KasI	GGCGCC	1 cut(s)	131
Ksp22I	TGATCA	1 cut(s)	559
Kzo9I	GATC	5 cut(s)	220, 400, 538, 559, 1046
LmnI	GCTCC	1 cut(s)	173
Lsp1109I	GCAGC	1 cut(s)	540
LweI	GCATC	2 cut(s)	117, 1051
MaeI	CTAG	4 cut(s)	53, 390, 513, 1158
MaeIII	GTNAC	3 cut(s)	37, 302, 860
MalI	GATC	5 cut(s)	222, 402, 540, 561, 1048
MboI	GATC	5 cut(s)	220, 400, 538, 559, 1046
MboII	GAAGA	5 cut(s)	76, 285, 1056, 1070, 1096
MflI	RGATCY	1 cut(s)	1046
MlsI	TGGCCA	1 cut(s)	665
MluCI	AATT	6 cut(s)	330, 498, 583, 675, 714, 742
MluNI	TGGCCA	1 cut(s)	665
Mly113I	GGCGCC	1 cut(s)	132
MmeI	TCCRAC	1 cut(s)	172
MnlI	CCTC	8 cut(s)	74, 131, 208, 260, 1023, 1060, 1114, 1145
Mox20I	TGGCCA	1 cut(s)	665
MscI	TGGCCA	1 cut(s)	665
MseI	TTAA	3 cut(s)	674, 693, 758
MslI	CAYNNNNRTG	2 cut(s)	339, 567
Msp20I	TGGCCA	1 cut(s)	665
MspR9I	CCNGG	3 cut(s)	178, 312, 405
Mva1269I	GAATGC	1 cut(s)	1150
MvaI	CCWGG	3 cut(s)	178, 312, 405
MvnI	CGCG	1 cut(s)	753
MwoI	GCNNNNNNNGC	3 cut(s)	833, 940, 977
NarI	GGCGCC	1 cut(s)	132
NcoI	CCATGG	1 cut(s)	28
NdeII	GATC	5 cut(s)	220, 400, 538, 559, 1046
NheI	GCTAGC	1 cut(s)	389
NlaIII	CATG	7 cut(s)	32, 250, 495, 770, 869, 928, 1039
NlaIV	GGNNCC	4 cut(s)	94, 133, 175, 271
NmuCI	GTSAC	1 cut(s)	37
NspI	RCATGY	2 cut(s)	495, 770
PaeR7I	CTCGAG	2 cut(s)	1118, 1138
PciI	ACATGT	1 cut(s)	766
PcsI	WCGNNNNNNNCGW	1 cut(s)	135
PctI	GAATGC	1 cut(s)	1150
PfeI	GAWTC	2 cut(s)	16, 1101
PfoI	TCCNGGA	1 cut(s)	403
PkrI	GCNGC	2 cut(s)	71, 530
PluTI	GGCGCC	1 cut(s)	135
PscI	ACATGT	1 cut(s)	766
PsiI	TTATAA	1 cut(s)	909
Psp6I	CCWGG	3 cut(s)	176, 310, 403
PspEI	GGTNACC	1 cut(s)	860
PspGI	CCWGG	3 cut(s)	176, 310, 403
PspN4I	GGNNCC	4 cut(s)	94, 133, 175, 271
PspPI	GGNCC	1 cut(s)	78
PsuI	RGATCY	1 cut(s)	1046
RsaI	GTAC	3 cut(s)	9, 184, 611
RsaNI	GTAC	3 cut(s)	8, 183, 610
RseI	CAYNNNNRTG	2 cut(s)	339, 567
SaqAI	TTAA	3 cut(s)	674, 693, 758
SatI	GCNGC	2 cut(s)	70, 529
Sau3AI	GATC	5 cut(s)	220, 400, 538, 559, 1046
Sau96I	GGNCC	1 cut(s)	78
ScaI	AGTACT	1 cut(s)	611
ScrFI	CCNGG	3 cut(s)	178, 312, 405
SfaNI	GCATC	2 cut(s)	117, 1051
SfoI	GGCGCC	1 cut(s)	133
Sfr274I	CTCGAG	2 cut(s)	1118, 1138
SlaI	CTCGAG	2 cut(s)	1118, 1138
SmiMI	CAYNNNNRTG	2 cut(s)	339, 567
SmlI	CTYRAG	2 cut(s)	1118, 1138
SmoI	CTYRAG	2 cut(s)	1118, 1138
Sse9I	AATT	6 cut(s)	330, 498, 583, 675, 714, 742
SsiI	CCGC	2 cut(s)	69, 753
SspDI	GGCGCC	1 cut(s)	131
SspI	AATATT	3 cut(s)	209, 463, 1114
SspMI	CTAG	4 cut(s)	53, 390, 513, 1158
StyD4I	CCNGG	3 cut(s)	176, 310, 403
StyI	CCWWGG	1 cut(s)	28
TaaI	ACNGT	4 cut(s)	12, 153, 243, 661
TaqI	TCGA	6 cut(s)	87, 223, 541, 1056, 1119, 1139
TasI	AATT	6 cut(s)	330, 498, 583, 675, 714, 742
TatI	WGTACW	1 cut(s)	609
TauI	GCSGC	1 cut(s)	72
TfiI	GAWTC	2 cut(s)	16, 1101
Tru1I	TTAA	3 cut(s)	674, 693, 758
Tru9I	TTAA	3 cut(s)	674, 693, 758
TscAI	CASTG	6 cut(s)	17, 48, 666, 782, 843, 994
TseFI	GTSAC	1 cut(s)	37
TseI	GCWGC	1 cut(s)	528
Tsp45I	GTSAC	1 cut(s)	37
TspDTI	ATGAA	3 cut(s)	235, 593, 963
TspGWI	ACGGA	1 cut(s)	190
TspRI	CASTG	6 cut(s)	17, 48, 666, 782, 843, 994
XapI	RAATTY	3 cut(s)	330, 498, 714
XbaI	TCTAGA	1 cut(s)	1157
XceI	RCATGY	2 cut(s)	495, 770
XcmI	CCANNNNNNNNNTGG	2 cut(s)	199, 1023
XhoI	CTCGAG	2 cut(s)	1118, 1138
XspI	CTAG	4 cut(s)	53, 390, 513, 1158
ZrmI	AGTACT	1 cut(s)	611

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.