Basic Information

Type: gene

Biological Identity

Species

arabidopsis_thaliana

Chromosome

Orthogroup ID

OG0008687

Physical Location & Seq

Genomic Coordinates Forward (+)

1907582 .. 1910063

Gene Structure 2482 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

AT3G06300.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 900 bp

ATGTCGATGTCTCGGCTCGGATTGTTGTTGTTCGTCGCTATATTGCTCGTCTTGCTTCAGTCTTCCACTTGTCTGATTAGTTCTCCAAGTTCTATCATCAATCCTTCTAAAGTCAAACAGGTTTCGTCGAAGCCCAGGGCATTTGTGTATGAAGGTTTTTTGACGGACTTGGAATGTGATCATCTAATCTCTCTTGCGAAAGAGAATCTGCAGAGATCTGCGGTTGCTGATAACGATAATGGCGAGAGTCAAGTCAGTGATGTTCGTACCAGCTCCGGCACTTTTATCTCCAAAGGAAAGGATCCTATTGTTTCCGGTATCGAGGACAAGCTCTCAACATGGACATTTCTCCCAAAAGAAAACGGGGAAGACCTTCAGGTATTGAGATATGAGCACGGTCAGAAATATGATGCTCACTTTGACTACTTCCACGACAAAGTCAACATTGCCCGTGGTGGACACCGCATAGCAACGGTTCTCTTGTATCTGTCCAATGTCACAAAGGGTGGAGAAACTGTTTTCCCCGATGCACAGGAATTCTCTCGCCGCTCGCTTTCTGAGAATAAAGACGATCTTTCTGATTGTGCAAAGAAAGGAATCGCTGTGAAACCGAAGAAAGGGAATGCTCTGTTGTTCTTCAACCTCCAACAAGACGCAATCCCAGACCCCTTTAGCCTTCACGGAGGTTGTCCAGTGATCGAAGGAGAGAAATGGTCGGCTACTAAGTGGATCCACGTGGACTCATTCGATAAGATATTGACACATGATGGTAACTGTACTGACGTAAACGAGAGCTGTGAGAGATGGGCAGTGCTTGGAGAATGTGGAAAGAATCCAGAGTATATGGTTGGAACTCCAGAGATCCCTGGGAATTGCAGACGTAGCTGTAAAGCTTGTTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0004656 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005737 GO:0005768 GO:0005783 GO:0005794 GO:0005802 GO:0006082 GO:0006464 GO:0006520 GO:0006575 GO:0006807 GO:0007275 GO:0008150 GO:0008152 GO:0009653 GO:0009888 GO:0009987 GO:0010015 GO:0010053 GO:0010054 GO:0012505 GO:0016491 GO:0016705 GO:0016706 GO:0018126 GO:0018193 GO:0018208 GO:0018401 GO:0019471 GO:0019511 GO:0019538 GO:0019752 GO:0019798 GO:0021700 GO:0022622 GO:0030154 GO:0031410 GO:0031543 GO:0031545 GO:0031982 GO:0031984 GO:0032501 GO:0032502 GO:0036211 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043412 GO:0043436 GO:0044237 GO:0044238 GO:0044260 GO:0044267 GO:0044281 GO:0044422 GO:0044424 GO:0044431 GO:0044444 GO:0044446 GO:0044464 GO:0048364 GO:0048468 GO:0048469 GO:0048731 GO:0048764 GO:0048765 GO:0048856 GO:0048869 GO:0051213 GO:0055114 GO:0071695 GO:0071704 GO:0080147 GO:0090558 GO:0090627 GO:0097708 GO:0098791 GO:0099402 GO:0140096 GO:1901564 GO:1901605 GO:1905392

KEGG Pathways

Metabolic & Signaling

ko00330 ko01100 map00330 map01100

Pfam Domains

Protein Families

2OG-FeII_Oxy_3 ShK

Protein Analysis

299

Amino Acids

33.02

Weight (kDa)

5.93

Isoelectric Point (pI)

53.33

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
2OG-FeII_Oxy	PF03171	123 - 245	1.9e-07	2OG-Fe(II) oxygenase superfamily
2OG-FeII_Oxy_3	PF13640	125 - 245	1.5e-19	2OG-Fe(II) oxygenase superfamily

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0008687)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G06300 AT5G18900
fragaria_vesca	FvH4_4g16790 FvH4_4g16790
malus_domestica	MD13G1176400.v1.1 MD16G1178200.v1.1
prunus_persica	Prupe.1G145500_v2.0.a1 Prupe.1G145500_v2.0.a1 Prupe.1G145500_v2.0.a1
pyrus_communis	pycom13g15220 pycom16g14970
rosa_chinensis	RchiOBHm_Chr4g0420361
rosa_laevigata	RLG00000007770
rosa_multiflora	Rmu_sc0002248.1_g000004 Rmu_sc0040667.1_g000002
rosa_roxburghii	Rroxscaffold_5G00363000
rosa_rugosa	Rorug04G0163500 Rorug04G0163500
rosa_samantha	Rh4AG224700 Rh4BG227700 Rh4CG239200 Rh4DG223200
rosa_wichuraiana	Rw4G019400

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccBSI	CCGCTC	1 cut(s)	549
AciI	CCGC	3 cut(s)	221, 463, 547
AclWI	GGATC	5 cut(s)	296, 309, 724, 737, 856
AcsI	RAATTY	1 cut(s)	536
AcuI	CTGAAG	2 cut(s)	41, 359
AcvI	CACGTG	1 cut(s)	736
AfaI	GTAC	2 cut(s)	268, 778
AfiI	CCNNNNNNNGG	1 cut(s)	617
AgsI	TTSAA	1 cut(s)	640
AjnI	CCWGG	2 cut(s)	134, 865
AluBI	AGCT	5 cut(s)	273, 331, 795, 885, 893
AluI	AGCT	5 cut(s)	273, 331, 795, 885, 893
Alw21I	GWGCWC	1 cut(s)	396
Alw26I	GTCTC	1 cut(s)	15
AlwI	GGATC	5 cut(s)	296, 309, 724, 737, 856
ApoI	RAATTY	1 cut(s)	536
Asp700I	GAANNNNTTC	1 cut(s)	372
BamHI	GGATCC	2 cut(s)	301, 729
BbrPI	CACGTG	1 cut(s)	736
BbsI	GAAGAC	2 cut(s)	54, 375
Bbv12I	GWGCWC	1 cut(s)	396
BccI	CCATC	2 cut(s)	761, 798
BciT130I	CCWGG	2 cut(s)	136, 867
BclI	TGATCA	1 cut(s)	178
BcoDI	GTCTC	1 cut(s)	15
BfmI	CTRYAG	1 cut(s)	209
BglII	AGATCT	1 cut(s)	215
BisI	GCNGC	1 cut(s)	547
BlsI	GCNGC	1 cut(s)	548
Bme1390I	CCNGG	2 cut(s)	136, 867
BmiI	GGNNCC	2 cut(s)	303, 731
BmrFI	CCNGG	2 cut(s)	136, 867
BmsI	GCATC	2 cut(s)	400, 517
BpiI	GAAGAC	2 cut(s)	54, 375
BpmI	CTGGAG	1 cut(s)	840
BsaAI	YACGTR	1 cut(s)	736
BsaJI	CCNNGG	5 cut(s)	134, 135, 451, 865, 866
BsaWI	WCCGGW	1 cut(s)	314
BsaXI	ACNNNNNCTCC	2 cut(s)	501, 531
Bsc4I	CCNNNNNNNGG	1 cut(s)	617
Bse1I	ACTGG	1 cut(s)	692
Bse3DI	GCAATG	1 cut(s)	444
BseBI	CCWGG	2 cut(s)	136, 867
BseDI	CCNNGG	5 cut(s)	134, 135, 451, 865, 866
BseLI	CCNNNNNNNGG	1 cut(s)	617
BseMI	GCAATG	1 cut(s)	444
BseMII	CTCAG	1 cut(s)	549
BseNI	ACTGG	1 cut(s)	692
BsiHKAI	GWGCWC	1 cut(s)	396
BsiSI	CCGG	2 cut(s)	276, 315
BslI	CCNNNNNNNGG	1 cut(s)	617
BsmAI	GTCTC	1 cut(s)	15
BsmI	GAATGC	1 cut(s)	628
Bsp1286I	GDGCHC	1 cut(s)	396
Bsp143I	GATC	7 cut(s)	178, 215, 301, 571, 696, 729, 861
BspACI	CCGC	3 cut(s)	221, 463, 547
BspCNI	CTCAG	1 cut(s)	550
BspLI	GGNNCC	2 cut(s)	303, 731
BspMAI	CTGCAG	1 cut(s)	213
BspPI	GGATC	5 cut(s)	296, 309, 724, 737, 856
BsrBI	CCGCTC	1 cut(s)	549
BsrDI	GCAATG	1 cut(s)	444
BsrI	ACTGG	1 cut(s)	692
BssECI	CCNNGG	5 cut(s)	134, 135, 451, 865, 866
BssMI	GATC	7 cut(s)	178, 215, 301, 571, 696, 729, 861
Bst2UI	CCWGG	2 cut(s)	136, 867
Bst4CI	ACNGT	4 cut(s)	398, 475, 517, 776
BstBAI	YACGTR	1 cut(s)	736
BstC8I	GCNNGC	1 cut(s)	551
BstDEI	CTNAG	2 cut(s)	558, 723
BstDSI	CCRYGG	1 cut(s)	451
BstKTI	GATC	7 cut(s)	181, 218, 304, 574, 699, 732, 864
BstMAI	GTCTC	1 cut(s)	15
BstMBI	GATC	7 cut(s)	178, 215, 301, 571, 696, 729, 861
BstMWI	GCNNNNNNNGC	2 cut(s)	52, 882
BstNI	CCWGG	2 cut(s)	136, 867
BstSCI	CCNGG	2 cut(s)	134, 865
BstSFI	CTRYAG	1 cut(s)	209
BstV2I	GAAGAC	2 cut(s)	54, 375
BstX2I	RGATCY	4 cut(s)	215, 301, 729, 861
BstYI	RGATCY	4 cut(s)	215, 301, 729, 861
BtgI	CCRYGG	1 cut(s)	451
BtsI	GCAGTG	1 cut(s)	816
BtsIMutI	CAGTG	3 cut(s)	262, 699, 816
Cac8I	GCNNGC	1 cut(s)	551
CseI	GACGC	1 cut(s)	662
Csp6I	GTAC	2 cut(s)	267, 777
CviAII	CATG	2 cut(s)	339, 764
CviJI	RGCY	9 cut(s)	16, 133, 273, 331, 675, 719, 795, 885, 893
CviKI_1	RGCY	9 cut(s)	16, 133, 273, 331, 675, 719, 795, 885, 893
CviQI	GTAC	2 cut(s)	267, 777
DdeI	CTNAG	2 cut(s)	558, 723
DpnI	GATC	7 cut(s)	180, 217, 303, 573, 698, 731, 863
DpnII	GATC	7 cut(s)	178, 215, 301, 571, 696, 729, 861
Eco57I	CTGAAG	2 cut(s)	41, 359
Eco72I	CACGTG	1 cut(s)	736
EcoRI	GAATTC	1 cut(s)	536
EcoRII	CCWGG	2 cut(s)	134, 865
FaeI	CATG	2 cut(s)	342, 767
FaiI	YATR	9 cut(s)	41, 150, 340, 390, 408, 467, 765, 843, 845
FalI	AAGNNNNNCTT	2 cut(s)	558, 590
FatI	CATG	2 cut(s)	338, 763
FbaI	TGATCA	1 cut(s)	178
Fnu4HI	GCNGC	1 cut(s)	547
Fsp4HI	GCNGC	1 cut(s)	547
GluI	GCNGC	1 cut(s)	547
GsuI	CTGGAG	1 cut(s)	840
HapII	CCGG	2 cut(s)	276, 315
HgaI	GACGC	1 cut(s)	662
Hin1II	CATG	2 cut(s)	342, 767
HincII	GTYRAC	1 cut(s)	442
HindII	GTYRAC	1 cut(s)	442
HindIII	AAGCTT	1 cut(s)	891
HinfI	GANTC	5 cut(s)	205, 247, 597, 740, 832
HpaII	CCGG	2 cut(s)	276, 315
Hpy166II	GTNNAC	4 cut(s)	442, 458, 739, 787
Hpy188I	TCNGA	5 cut(s)	20, 75, 402, 559, 580
Hpy188III	TCNNGA	2 cut(s)	836, 857
Hpy8I	GTNNAC	4 cut(s)	442, 458, 739, 787
Hpy99I	CGWCG	2 cut(s)	38, 130
HpyAV	CCTTC	5 cut(s)	114, 146, 383, 686, 695
HpyCH4III	ACNGT	4 cut(s)	398, 475, 517, 776
HpyCH4IV	ACGT	3 cut(s)	735, 783, 880
HpyCH4V	TGCA	4 cut(s)	211, 530, 587, 876
HpyF10VI	GCNNNNNNNGC	2 cut(s)	52, 882
HpyF3I	CTNAG	2 cut(s)	558, 723
HpySE526I	ACGT	3 cut(s)	735, 783, 880
Hsp92II	CATG	2 cut(s)	342, 767
Ksp22I	TGATCA	1 cut(s)	178
Kzo9I	GATC	7 cut(s)	178, 215, 301, 571, 696, 729, 861
LmnI	GCTCC	1 cut(s)	278
LweI	GCATC	2 cut(s)	400, 517
MaeII	ACGT	3 cut(s)	735, 783, 880
MaeIII	GTNAC	2 cut(s)	496, 770
MalI	GATC	7 cut(s)	180, 217, 303, 573, 698, 731, 863
MbiI	CCGCTC	1 cut(s)	549
MboI	GATC	7 cut(s)	178, 215, 301, 571, 696, 729, 861
MboII	GAAGA	4 cut(s)	54, 380, 625, 628
MflI	RGATCY	4 cut(s)	215, 301, 729, 861
MhlI	GDGCHC	1 cut(s)	396
MluCI	AATT	2 cut(s)	536, 871
MlyI	GAGTC	2 cut(s)	256, 734
MmeI	TCCRAC	2 cut(s)	670, 829
MnlI	CCTC	3 cut(s)	316, 653, 677
MroXI	GAANNNNTTC	1 cut(s)	372
MseI	TTAA	1 cut(s)	898
MspI	CCGG	2 cut(s)	276, 315
MspR9I	CCNGG	2 cut(s)	136, 867
Mva1269I	GAATGC	1 cut(s)	628
MvaI	CCWGG	2 cut(s)	136, 867
MwoI	GCNNNNNNNGC	2 cut(s)	52, 882
NdeII	GATC	7 cut(s)	178, 215, 301, 571, 696, 729, 861
NlaIII	CATG	2 cut(s)	342, 767
NlaIV	GGNNCC	2 cut(s)	303, 731
NmuCI	GTSAC	1 cut(s)	496
PasI	CCCWGGG	2 cut(s)	135, 866
PcsI	WCGNNNNNNNCGW	1 cut(s)	240
PctI	GAATGC	1 cut(s)	628
PdmI	GAANNNNTTC	1 cut(s)	372
PfeI	GAWTC	3 cut(s)	205, 597, 832
PflFI	GACNNNGTC	1 cut(s)	437
PkrI	GCNGC	1 cut(s)	548
PleI	GAGTC	2 cut(s)	255, 734
PmaCI	CACGTG	1 cut(s)	736
PmlI	CACGTG	1 cut(s)	736
PpsI	GAGTC	2 cut(s)	255, 734
Ppu21I	YACGTR	1 cut(s)	736
Psp6I	CCWGG	2 cut(s)	134, 865
PspCI	CACGTG	1 cut(s)	736
PspGI	CCWGG	2 cut(s)	134, 865
PspN4I	GGNNCC	2 cut(s)	303, 731
PstI	CTGCAG	1 cut(s)	213
PsuI	RGATCY	4 cut(s)	215, 301, 729, 861
PsyI	GACNNNGTC	1 cut(s)	437
RsaI	GTAC	2 cut(s)	268, 778
RsaNI	GTAC	2 cut(s)	267, 777
SaqAI	TTAA	1 cut(s)	898
SatI	GCNGC	1 cut(s)	547
Sau3AI	GATC	7 cut(s)	178, 215, 301, 571, 696, 729, 861
SchI	GAGTC	2 cut(s)	256, 734
ScrFI	CCNGG	2 cut(s)	136, 867
SduI	GDGCHC	1 cut(s)	396
SfaNI	GCATC	2 cut(s)	400, 517
SfcI	CTRYAG	1 cut(s)	209
Sse9I	AATT	2 cut(s)	536, 871
SsiI	CCGC	3 cut(s)	221, 463, 547
StyD4I	CCNGG	2 cut(s)	134, 865
TaaI	ACNGT	4 cut(s)	398, 475, 517, 776
TaiI	ACGT	3 cut(s)	738, 786, 883
TaqI	TCGA	5 cut(s)	5, 128, 321, 699, 747
TasI	AATT	2 cut(s)	536, 871
TatI	WGTACW	1 cut(s)	776
TauI	GCSGC	1 cut(s)	549
TfiI	GAWTC	3 cut(s)	205, 597, 832
Tru1I	TTAA	1 cut(s)	898
Tru9I	TTAA	1 cut(s)	898
TscAI	CASTG	3 cut(s)	262, 699, 816
TseFI	GTSAC	1 cut(s)	496
Tsp45I	GTSAC	1 cut(s)	496
TspDTI	ATGAA	1 cut(s)	165
TspGWI	ACGGA	2 cut(s)	179, 696
TspRI	CASTG	3 cut(s)	262, 699, 816
Tth111I	GACNNNGTC	1 cut(s)	437
XapI	RAATTY	1 cut(s)	536
XmnI	GAANNNNTTC	1 cut(s)	372

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.