Basic Information

Type: gene

Biological Identity

Species

rosa_roxburghii

Chromosome

GWHEROQ00000005

Orthogroup ID

OG0008687

Physical Location & Seq

Genomic Coordinates Forward (+)

44054150 .. 44057280

Gene Structure 3131 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rroxscaffold_5G00363000.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 939 bp

ATGAAGAAGACTAGGGTTTCTTCGCATCAGCTCTGCTTCCTCTTCTTCCTTCTCTCAATCACCAACCCCACCACCACCACCTTTGCCACCTTCACCGTCAACCCCTCCAAAGCGAAATCGGAGCTGAAGAGATCGGCCGTCGCCGATAACTTGTCCGGTCAGAGCAAGCTCAGCGAGGTGCGCACCAGCTCCGGCATGTTCATCCCCAAGGCCAAGGTTTCTTCTTTTTCGCCGCTGTCTATGCTTTATCTGACTGATCATATTGTTGCTGGTATAGAGGACAAGCTTGCAACATGGACATTTCTCCCAAAAGGTTCAGTTTCTAATGGATGCATGAAATTGGGACCTTCCTATAAGTGTTTGGGAATTGGTTCTGCTGATTTTGTGCAGCAGAGTGAGAATGGAGAAGACATACAAGTATTGAGATATGAGCCTGGGCAGAAATATGAACCACACTATGATTACTTTGCTGACAAGGTCAATATTGCGCGGGGTGGACATCGTATAGCAACTGTACTTATGTATCTTACTGATGTGGCCAAAGGTGGTGAAACAGTGTTTCCTCTAGCAGAGGAAATTCACCGCCGTAAGGCTTCAGAACCAGATGCGAGTCTCTCTGACTGTGCAAAGAAAGGAATTGCAGTGAAACCACGAAGAGGAGATGCCCTTCTTTTCTTCAGTCTCCACCCAAACGCAGTTCCAGACAAAAACAGTCTCCATGCGGGGTGCCCAGTGATTGAAGGTGAGAAATGGTCAGCGACAAAGTGGATTCATGTTGACTCATTTGACAAGATCTTGGATACCGGTGGGAACTGCACAGATCTAAATGAGAGTTGTGACAGATGGGCTGCCCTTGGGGAATGCACCAAGAACCGAGAGTATATGGTTGGATCTGCTGACCTTCCTGGCTACTGTAGGAGGAGTTGTAAGGTGTGTTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0004656 GO:0006082 GO:0006464 GO:0006520 GO:0006575 GO:0006807 GO:0008150 GO:0008152 GO:0009987 GO:0016491 GO:0016705 GO:0016706 GO:0018126 GO:0018193 GO:0018208 GO:0018401 GO:0019471 GO:0019511 GO:0019538 GO:0019752 GO:0019798 GO:0031543 GO:0031545 GO:0036211 GO:0043170 GO:0043412 GO:0043436 GO:0044237 GO:0044238 GO:0044260 GO:0044267 GO:0044281 GO:0051213 GO:0055114 GO:0071704 GO:0140096 GO:1901564 GO:1901605

KEGG Pathways

Metabolic & Signaling

ko00330 ko01100 map00330 map01100

Pfam Domains

Protein Families

2OG-FeII_Oxy_3 ShK

Protein Analysis

312

Amino Acids

34.28

Weight (kDa)

8.55

Isoelectric Point (pI)

48.21

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
2OG-FeII_Oxy	PF03171	136 - 258	5.9e-09	2OG-Fe(II) oxygenase superfamily
2OG-FeII_Oxy_3	PF13640	138 - 258	6.8e-19	2OG-Fe(II) oxygenase superfamily

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0008687)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G06300 AT5G18900
fragaria_vesca	FvH4_4g16790 FvH4_4g16790
malus_domestica	MD13G1176400.v1.1 MD16G1178200.v1.1
prunus_persica	Prupe.1G145500_v2.0.a1 Prupe.1G145500_v2.0.a1 Prupe.1G145500_v2.0.a1
pyrus_communis	pycom13g15220 pycom16g14970
rosa_chinensis	RchiOBHm_Chr4g0420361
rosa_laevigata	RLG00000007770
rosa_multiflora	Rmu_sc0002248.1_g000004 Rmu_sc0040667.1_g000002
rosa_roxburghii	Rroxscaffold_5G00363000
rosa_rugosa	Rorug04G0163500 Rorug04G0163500
rosa_samantha	Rh4AG224700 Rh4BG227700 Rh4CG239200 Rh4DG223200
rosa_wichuraiana	Rw4G019400

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc16I	TGCGCA	1 cut(s)	182
AccB1I	GGYRCC	1 cut(s)	726
AccII	CGCG	1 cut(s)	490
AciI	CCGC	4 cut(s)	233, 490, 583, 722
AclWI	GGATC	1 cut(s)	898
AcoI	YGGCCR	2 cut(s)	135, 537
AcsI	RAATTY	1 cut(s)	576
AcuI	CTGAAG	3 cut(s)	146, 579, 661
AfaI	GTAC	1 cut(s)	516
AfiI	CCNNNNNNNGG	2 cut(s)	589, 656
AgeI	ACCGGT	1 cut(s)	803
AgsI	TTSAA	1 cut(s)	740
AjnI	CCWGG	2 cut(s)	433, 904
AluBI	AGCT	5 cut(s)	31, 124, 169, 189, 286
AluI	AGCT	5 cut(s)	31, 124, 169, 189, 286
Alw26I	GTCTC	3 cut(s)	617, 686, 719
AlwI	GGATC	1 cut(s)	898
AoxI	GGCC	3 cut(s)	135, 210, 537
ApeKI	GCWGC	2 cut(s)	388, 848
ApoI	RAATTY	1 cut(s)	576
AsiGI	ACCGGT	1 cut(s)	803
Asp700I	GAANNNNTTC	1 cut(s)	370
AspLEI	GCGC	2 cut(s)	183, 490
AspS9I	GGNCC	1 cut(s)	344
AsuHPI	GGTGA	5 cut(s)	52, 85, 560, 572, 755
AvaII	GGWCC	1 cut(s)	344
BaeGI	GKGCMC	1 cut(s)	731
BaeI	ACNNNNGTAYC	2 cut(s)	506, 539
BalI	TGGCCA	1 cut(s)	539
BanI	GGYRCC	1 cut(s)	726
BbsI	GAAGAC	2 cut(s)	14, 414
BbvI	GCAGC	2 cut(s)	400, 835
BccI	CCATC	1 cut(s)	837
BceAI	ACGGC	2 cut(s)	122, 570
BciT130I	CCWGG	2 cut(s)	435, 906
BciVI	GTATCC	1 cut(s)	793
BclI	TGATCA	1 cut(s)	256
BcoDI	GTCTC	3 cut(s)	617, 686, 719
BfaI	CTAG	2 cut(s)	12, 566
BfmI	CTRYAG	1 cut(s)	913
BfuI	GTATCC	1 cut(s)	793
BglII	AGATCT	2 cut(s)	792, 820
BisI	GCNGC	3 cut(s)	233, 389, 849
BlpI	GCTNAGC	1 cut(s)	170
BlsI	GCNGC	3 cut(s)	234, 390, 850
Bme1390I	CCNGG	2 cut(s)	435, 906
Bme18I	GGWCC	1 cut(s)	344
BmgT120I	GGNCC	1 cut(s)	344
BmiI	GGNNCC	2 cut(s)	345, 728
BmrFI	CCNGG	2 cut(s)	435, 906
BmrI	ACTGGG	1 cut(s)	725
BmsI	GCATC	4 cut(s)	34, 320, 595, 652
BmuI	ACTGGG	1 cut(s)	725
BpiI	GAAGAC	2 cut(s)	14, 414
Bpu1102I	GCTNAGC	1 cut(s)	170
BsaJI	CCNNGG	4 cut(s)	207, 213, 434, 853
BsaWI	WCCGGW	2 cut(s)	155, 803
BsaXI	ACNNNNNCTCC	1 cut(s)	910
Bsc4I	CCNNNNNNNGG	2 cut(s)	589, 656
Bse118I	RCCGGY	1 cut(s)	803
Bse1I	ACTGG	1 cut(s)	731
BseBI	CCWGG	2 cut(s)	435, 906
BseDI	CCNNGG	4 cut(s)	207, 213, 434, 853
BseGI	GGATG	2 cut(s)	201, 335
BseLI	CCNNNNNNNGG	2 cut(s)	589, 656
BseMII	CTCAG	1 cut(s)	184
BseNI	ACTGG	1 cut(s)	731
BseRI	GAGGAG	2 cut(s)	672, 934
BseSI	GKGCMC	1 cut(s)	731
BseX3I	CGGCCG	1 cut(s)	135
BseXI	GCAGC	2 cut(s)	400, 835
BsgI	GTGCAG	2 cut(s)	407, 799
Bsh1236I	CGCG	1 cut(s)	490
Bsh1285I	CGRYCG	1 cut(s)	138
BshFI	GGCC	3 cut(s)	137, 212, 539
BshNI	GGYRCC	1 cut(s)	726
BshTI	ACCGGT	1 cut(s)	803
BsiEI	CGRYCG	1 cut(s)	138
BsiSI	CCGG	3 cut(s)	156, 192, 804
BslFI	GGGAC	1 cut(s)	357
BslI	CCNNNNNNNGG	2 cut(s)	589, 656
BsmAI	GTCTC	3 cut(s)	617, 686, 719
BsmFI	GGGAC	1 cut(s)	357
BsmI	GAATGC	1 cut(s)	866
BsnI	GGCC	3 cut(s)	137, 212, 539
Bsp1286I	GDGCHC	1 cut(s)	731
Bsp143I	GATC	5 cut(s)	131, 256, 792, 820, 890
Bsp1720I	GCTNAGC	1 cut(s)	170
BspACI	CCGC	4 cut(s)	233, 490, 583, 722
BspANI	GGCC	3 cut(s)	137, 212, 539
BspCNI	CTCAG	1 cut(s)	183
BspFNI	CGCG	1 cut(s)	490
BspLI	GGNNCC	2 cut(s)	345, 728
BspPI	GGATC	1 cut(s)	898
BspT107I	GGYRCC	1 cut(s)	726
BsrFI	RCCGGY	1 cut(s)	803
BsrI	ACTGG	1 cut(s)	731
BssAI	RCCGGY	1 cut(s)	803
BssECI	CCNNGG	4 cut(s)	207, 213, 434, 853
BssMI	GATC	5 cut(s)	131, 256, 792, 820, 890
BssT1I	CCWWGG	3 cut(s)	207, 213, 853
Bst2UI	CCWGG	2 cut(s)	435, 906
Bst4CI	ACNGT	6 cut(s)	97, 514, 556, 623, 713, 914
Bst6I	CTCTTC	3 cut(s)	47, 122, 649
BstC8I	GCNNGC	2 cut(s)	167, 288
BstDEI	CTNAG	1 cut(s)	170
BstF5I	GGATG	2 cut(s)	201, 335
BstFNI	CGCG	1 cut(s)	490
BstHHI	GCGC	2 cut(s)	183, 490
BstKTI	GATC	5 cut(s)	134, 259, 795, 823, 893
BstMAI	GTCTC	3 cut(s)	617, 686, 719
BstMBI	GATC	5 cut(s)	131, 256, 792, 820, 890
BstMCI	CGRYCG	1 cut(s)	138
BstMWI	GCNNNNNNNGC	3 cut(s)	171, 180, 241
BstNI	CCWGG	2 cut(s)	435, 906
BstNSI	RCATGY	1 cut(s)	199
BstSCI	CCNGG	2 cut(s)	433, 904
BstSFI	CTRYAG	1 cut(s)	913
BstSLI	GKGCMC	1 cut(s)	731
BstUI	CGCG	1 cut(s)	490
BstV1I	GCAGC	2 cut(s)	400, 835
BstV2I	GAAGAC	2 cut(s)	14, 414
BstX2I	RGATCY	3 cut(s)	792, 820, 890
BstYI	RGATCY	3 cut(s)	792, 820, 890
BstZI	CGGCCG	1 cut(s)	135
BsuI	GTATCC	1 cut(s)	793
BsuRI	GGCC	3 cut(s)	137, 212, 539
BtsCI	GGATG	2 cut(s)	201, 335
BtsI	GCAGTG	1 cut(s)	648
BtsIMutI	CAGTG	3 cut(s)	561, 648, 738
Cac8I	GCNNGC	2 cut(s)	167, 288
CfoI	GCGC	2 cut(s)	183, 490
Cfr10I	RCCGGY	1 cut(s)	803
Cfr13I	GGNCC	1 cut(s)	344
Csp6I	GTAC	1 cut(s)	515
CspAI	ACCGGT	1 cut(s)	803
CspCI	CAANNNNNGTGG	2 cut(s)	64, 99
CviAII	CATG	5 cut(s)	196, 294, 334, 719, 773
CviQI	GTAC	1 cut(s)	515
DdeI	CTNAG	1 cut(s)	170
DpnI	GATC	5 cut(s)	133, 258, 794, 822, 892
DpnII	GATC	5 cut(s)	131, 256, 792, 820, 890
EaeI	YGGCCR	2 cut(s)	135, 537
EagI	CGGCCG	1 cut(s)	135
Eam1104I	CTCTTC	3 cut(s)	47, 122, 649
EarI	CTCTTC	3 cut(s)	47, 122, 649
EclXI	CGGCCG	1 cut(s)	135
Eco130I	CCWWGG	3 cut(s)	207, 213, 853
Eco47I	GGWCC	1 cut(s)	344
Eco52I	CGGCCG	1 cut(s)	135
Eco57I	CTGAAG	3 cut(s)	146, 579, 661
EcoO109I	RGGNCCY	1 cut(s)	344
EcoRII	CCWGG	2 cut(s)	433, 904
EcoT14I	CCWWGG	3 cut(s)	207, 213, 853
EcoT22I	ATGCAT	1 cut(s)	335
ErhI	CCWWGG	3 cut(s)	207, 213, 853
FaeI	CATG	5 cut(s)	199, 297, 337, 722, 776
FaqI	GGGAC	1 cut(s)	357
FatI	CATG	5 cut(s)	195, 293, 333, 718, 772
FauI	CCCGC	2 cut(s)	483, 715
FbaI	TGATCA	1 cut(s)	256
Fnu4HI	GCNGC	3 cut(s)	233, 389, 849
FokI	GGATG	2 cut(s)	188, 342
Fsp4HI	GCNGC	3 cut(s)	233, 389, 849
FspAI	RTGCGCAY	1 cut(s)	182
FspBI	CTAG	2 cut(s)	12, 566
FspI	TGCGCA	1 cut(s)	182
GlaI	GCGC	2 cut(s)	182, 489
GluI	GCNGC	3 cut(s)	233, 389, 849
HaeIII	GGCC	3 cut(s)	137, 212, 539
HapII	CCGG	3 cut(s)	156, 192, 804
HhaI	GCGC	2 cut(s)	183, 490
Hin1II	CATG	5 cut(s)	199, 297, 337, 722, 776
Hin6I	GCGC	2 cut(s)	181, 488
HinP1I	GCGC	2 cut(s)	181, 488
HincII	GTYRAC	2 cut(s)	100, 778
HindII	GTYRAC	2 cut(s)	100, 778
HindIII	AAGCTT	1 cut(s)	284
HinfI	GANTC	3 cut(s)	610, 769, 779
HpaII	CCGG	3 cut(s)	156, 192, 804
HphI	GGTGA	5 cut(s)	52, 85, 560, 572, 755
Hpy166II	GTNNAC	3 cut(s)	100, 497, 778
Hpy188I	TCNGA	5 cut(s)	121, 162, 252, 598, 619
Hpy188III	TCNNGA	1 cut(s)	701
Hpy8I	GTNNAC	3 cut(s)	100, 497, 778
Hpy99I	CGWCG	1 cut(s)	143
HpyAV	CCTTC	6 cut(s)	59, 100, 357, 677, 734, 911
HpyCH4III	ACNGT	6 cut(s)	97, 514, 556, 623, 713, 914
HpyCH4V	TGCA	7 cut(s)	290, 333, 388, 626, 641, 816, 864
HpyF10VI	GCNNNNNNNGC	3 cut(s)	171, 180, 241
HpyF3I	CTNAG	1 cut(s)	170
Hsp92II	CATG	5 cut(s)	199, 297, 337, 722, 776
HspAI	GCGC	2 cut(s)	181, 488
Ksp22I	TGATCA	1 cut(s)	256
Kzo9I	GATC	5 cut(s)	131, 256, 792, 820, 890
LmnI	GCTCC	2 cut(s)	121, 194
Lsp1109I	GCAGC	2 cut(s)	400, 835
LweI	GCATC	4 cut(s)	34, 320, 595, 652
MaeI	CTAG	2 cut(s)	12, 566
MaeIII	GTNAC	1 cut(s)	836
MalI	GATC	5 cut(s)	133, 258, 794, 822, 892
MboI	GATC	5 cut(s)	131, 256, 792, 820, 890
MflI	RGATCY	3 cut(s)	792, 820, 890
MhlI	GDGCHC	1 cut(s)	731
MlsI	TGGCCA	1 cut(s)	539
MluCI	AATT	4 cut(s)	338, 366, 576, 636
MluNI	TGGCCA	1 cut(s)	539
MlyI	GAGTC	2 cut(s)	619, 773
MmeI	TCCRAC	1 cut(s)	868
MnlI	CCTC	8 cut(s)	50, 115, 169, 271, 565, 573, 650, 912
Mox20I	TGGCCA	1 cut(s)	539
Mph1103I	ATGCAT	1 cut(s)	335
MroXI	GAANNNNTTC	1 cut(s)	370
MscI	TGGCCA	1 cut(s)	539
MseI	TTAA	1 cut(s)	937
Msp20I	TGGCCA	1 cut(s)	539
MspA1I	CMGCKG	1 cut(s)	235
MspI	CCGG	3 cut(s)	156, 192, 804
MspR9I	CCNGG	2 cut(s)	435, 906
Mva1269I	GAATGC	1 cut(s)	866
MvaI	CCWGG	2 cut(s)	435, 906
MvnI	CGCG	1 cut(s)	490
MwoI	GCNNNNNNNGC	3 cut(s)	171, 180, 241
NdeII	GATC	5 cut(s)	131, 256, 792, 820, 890
NlaIII	CATG	5 cut(s)	199, 297, 337, 722, 776
NlaIV	GGNNCC	2 cut(s)	345, 728
NmuCI	GTSAC	1 cut(s)	836
NsbI	TGCGCA	1 cut(s)	182
NsiI	ATGCAT	1 cut(s)	335
NspI	RCATGY	1 cut(s)	199
PctI	GAATGC	1 cut(s)	866
PdmI	GAANNNNTTC	1 cut(s)	370
PfeI	GAWTC	1 cut(s)	769
PflFI	GACNNNGTC	1 cut(s)	476
PinAI	ACCGGT	1 cut(s)	803
PkrI	GCNGC	3 cut(s)	234, 390, 850
PleI	GAGTC	2 cut(s)	618, 773
PpsI	GAGTC	2 cut(s)	618, 773
PpuMI	RGGWCCY	1 cut(s)	344
Psp5II	RGGWCCY	1 cut(s)	344
Psp6I	CCWGG	2 cut(s)	433, 904
PspGI	CCWGG	2 cut(s)	433, 904
PspN4I	GGNNCC	2 cut(s)	345, 728
PspPI	GGNCC	1 cut(s)	344
PspPPI	RGGWCCY	1 cut(s)	344
PsuI	RGATCY	3 cut(s)	792, 820, 890
PsyI	GACNNNGTC	1 cut(s)	476
RsaI	GTAC	1 cut(s)	516
RsaNI	GTAC	1 cut(s)	515
SaqAI	TTAA	1 cut(s)	937
SatI	GCNGC	3 cut(s)	233, 389, 849
Sau3AI	GATC	5 cut(s)	131, 256, 792, 820, 890
Sau96I	GGNCC	1 cut(s)	344
SchI	GAGTC	2 cut(s)	619, 773
ScrFI	CCNGG	2 cut(s)	435, 906
SduI	GDGCHC	1 cut(s)	731
SfaNI	GCATC	4 cut(s)	34, 320, 595, 652
SfcI	CTRYAG	1 cut(s)	913
SinI	GGWCC	1 cut(s)	344
Sse9I	AATT	4 cut(s)	338, 366, 576, 636
SsiI	CCGC	4 cut(s)	233, 490, 583, 722
SspI	AATATT	1 cut(s)	484
SspMI	CTAG	2 cut(s)	12, 566
StyD4I	CCNGG	2 cut(s)	433, 904
StyI	CCWWGG	3 cut(s)	207, 213, 853
TaaI	ACNGT	6 cut(s)	97, 514, 556, 623, 713, 914
TasI	AATT	4 cut(s)	338, 366, 576, 636
TatI	WGTACW	1 cut(s)	514
TauI	GCSGC	1 cut(s)	235
TfiI	GAWTC	1 cut(s)	769
Tru1I	TTAA	1 cut(s)	937
Tru9I	TTAA	1 cut(s)	937
TscAI	CASTG	3 cut(s)	561, 648, 738
TseFI	GTSAC	1 cut(s)	836
TseI	GCWGC	2 cut(s)	388, 848
Tsp45I	GTSAC	1 cut(s)	836
TspDTI	ATGAA	5 cut(s)	17, 190, 350, 462, 761
TspRI	CASTG	3 cut(s)	561, 648, 738
Tth111I	GACNNNGTC	1 cut(s)	476
VpaK11BI	GGWCC	1 cut(s)	344
XapI	RAATTY	1 cut(s)	576
XceI	RCATGY	1 cut(s)	199
XmnI	GAANNNNTTC	1 cut(s)	370
XspI	CTAG	2 cut(s)	12, 566
Zsp2I	ATGCAT	1 cut(s)	335

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.