Basic Information

Type: gene

Biological Identity

Species

rosa_chinensis

Chromosome

Orthogroup ID

OG0008687

Physical Location & Seq

Genomic Coordinates Forward (+)

46057688 .. 46060938

Gene Structure 3251 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

PRQ39011

Sequence Viewer

CDS Protein Promoter (2k)

Length: 894 bp

ATGAAGAAAAAGACTAGGGTTTCTTCGCCTCAGCTCTGCTTCCTCTTCTTCCTTCTCTCAATCACCACCACCACCTTTGCCACCTTCACCGTCAACCCTTCCAAAGTGAAGCAGATCTCATGGAACCCCAGAGCTTTCGTGTACGAAGGTTTGCTCACCGACTTGGAATGCGATCACTTGATCTCCATTGCGAAATCGGAGCTGAAGAGATCGGCCGTCGCCGATAACTTGTCCGGTCAGAGCAAGCTCAGCGAGGTACGCACCAGCTCCGGCATGTTCATCCCCAAGGCCAAGGATCATATTGTTGCTGGAATAGAGGACAAGCTTGCAACATGGACATTTCTCCCAAAAGAGAATGGAGAAGACATACAAGTATTGAGATATGAGCCTGGGCAGAAATATGAACCACACTATGATTACTTTGCTGACAAGGTCAATATTGCGCGGGGTGGACATCGTATAGCAACTGTACTTATGTATCTTACTGATGTGGCCAAAGGTGGTGAAACAGTGTTTCCTCTAGCAGAGGAAATTCACCGCCGTAAGGCTTCAGAACCAGATGCAAGTCTCTCTGACTGTGCAAAGAAAGGAATTGCAGTGAAACCACGGAGAGGAGATGCCCTTCTTTTCTTCAGTCTCCACCCAAACGCAGTTCCAGACGAAAACAGTCTCCATGCGGGGTGCCCAGTGATTGAAGGTGAGAAATGGTCAGCGACAAAGTGGATTCATGTTGACTCATTTGACAAGATCTTGGATACCGGTGGGAACTGCACAGATCTAAATGAGAGTTGTGACAGATGGGCTGCCCTTGGGGAATGCACCAAGAACCGAGAGTATATGGTTGGATCTGCTGACCTCCCTGGCTACTGTAGGAGGAGTTGTAAGGTGTGTTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0004656 GO:0006082 GO:0006464 GO:0006520 GO:0006575 GO:0006807 GO:0008150 GO:0008152 GO:0009987 GO:0016491 GO:0016705 GO:0016706 GO:0018126 GO:0018193 GO:0018208 GO:0018401 GO:0019471 GO:0019511 GO:0019538 GO:0019752 GO:0019798 GO:0031543 GO:0031545 GO:0036211 GO:0043170 GO:0043412 GO:0043436 GO:0044237 GO:0044238 GO:0044260 GO:0044267 GO:0044281 GO:0051213 GO:0055114 GO:0071704 GO:0140096 GO:1901564 GO:1901605

KEGG Pathways

Metabolic & Signaling

ko00330 ko01100 map00330 map01100

Pfam Domains

Protein Families

2OG-FeII_Oxy_3 ShK

Protein Analysis

297

Amino Acids

33.06

Weight (kDa)

7.55

Isoelectric Point (pI)

50.14

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
2OG-FeII_Oxy	PF03171	121 - 243	1.5e-08	2OG-Fe(II) oxygenase superfamily
2OG-FeII_Oxy_3	PF13640	123 - 243	6e-19	2OG-Fe(II) oxygenase superfamily

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0008687)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G06300 AT5G18900
fragaria_vesca	FvH4_4g16790 FvH4_4g16790
malus_domestica	MD13G1176400.v1.1 MD16G1178200.v1.1
prunus_persica	Prupe.1G145500_v2.0.a1 Prupe.1G145500_v2.0.a1 Prupe.1G145500_v2.0.a1
pyrus_communis	pycom13g15220 pycom16g14970
rosa_chinensis	RchiOBHm_Chr4g0420361
rosa_laevigata	RLG00000007770
rosa_multiflora	Rmu_sc0002248.1_g000004 Rmu_sc0040667.1_g000002
rosa_roxburghii	Rroxscaffold_5G00363000
rosa_rugosa	Rorug04G0163500 Rorug04G0163500
rosa_samantha	Rh4AG224700 Rh4BG227700 Rh4CG239200 Rh4DG223200
rosa_wichuraiana	Rw4G019400

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB1I	GGYRCC	1 cut(s)	681
AccII	CGCG	1 cut(s)	445
AciI	CCGC	3 cut(s)	445, 538, 677
AclWI	GGATC	2 cut(s)	303, 853
AcoI	YGGCCR	2 cut(s)	213, 492
AcsI	RAATTY	1 cut(s)	531
AcuI	CTGAAG	3 cut(s)	224, 534, 616
AfaI	GTAC	3 cut(s)	143, 258, 471
AfiI	CCNNNNNNNGG	2 cut(s)	544, 611
AgeI	ACCGGT	1 cut(s)	758
AgsI	TTSAA	1 cut(s)	695
AjnI	CCWGG	2 cut(s)	388, 859
AluBI	AGCT	6 cut(s)	34, 134, 202, 247, 267, 325
AluI	AGCT	6 cut(s)	34, 134, 202, 247, 267, 325
Alw26I	GTCTC	3 cut(s)	572, 641, 674
AlwI	GGATC	2 cut(s)	303, 853
AoxI	GGCC	3 cut(s)	213, 288, 492
ApeKI	GCWGC	1 cut(s)	803
ApoI	RAATTY	1 cut(s)	531
AsiGI	ACCGGT	1 cut(s)	758
AspLEI	GCGC	1 cut(s)	445
AsuHPI	GGTGA	6 cut(s)	55, 79, 148, 515, 527, 710
BaeGI	GKGCMC	1 cut(s)	686
BaeI	ACNNNNGTAYC	2 cut(s)	461, 494
BalI	TGGCCA	1 cut(s)	494
BanI	GGYRCC	1 cut(s)	681
BbsI	GAAGAC	1 cut(s)	369
BbvCI	CCTCAGC	1 cut(s)	30
BbvI	GCAGC	1 cut(s)	790
BccI	CCATC	1 cut(s)	792
BceAI	ACGGC	2 cut(s)	200, 525
BciT130I	CCWGG	2 cut(s)	390, 861
BciVI	GTATCC	1 cut(s)	748
BcoDI	GTCTC	3 cut(s)	572, 641, 674
BfaI	CTAG	2 cut(s)	15, 521
BfmI	CTRYAG	1 cut(s)	868
BfuI	GTATCC	1 cut(s)	748
BglII	AGATCT	3 cut(s)	114, 747, 775
BisI	GCNGC	1 cut(s)	804
BlpI	GCTNAGC	1 cut(s)	248
BlsI	GCNGC	1 cut(s)	805
Bme1390I	CCNGG	2 cut(s)	390, 861
BmiI	GGNNCC	2 cut(s)	125, 683
BmrFI	CCNGG	2 cut(s)	390, 861
BmrI	ACTGGG	1 cut(s)	680
BmsI	GCATC	2 cut(s)	550, 607
BmuI	ACTGGG	1 cut(s)	680
BpiI	GAAGAC	1 cut(s)	369
Bpu10I	CCTNAGC	1 cut(s)	30
Bpu1102I	GCTNAGC	1 cut(s)	248
BsaJI	CCNNGG	6 cut(s)	285, 291, 389, 605, 808, 859
BsaWI	WCCGGW	2 cut(s)	233, 758
BsaXI	ACNNNNNCTCC	3 cut(s)	167, 197, 865
Bsc4I	CCNNNNNNNGG	2 cut(s)	544, 611
Bse118I	RCCGGY	1 cut(s)	758
Bse1I	ACTGG	1 cut(s)	686
Bse3DI	GCAATG	1 cut(s)	186
BseBI	CCWGG	2 cut(s)	390, 861
BseDI	CCNNGG	6 cut(s)	285, 291, 389, 605, 808, 859
BseGI	GGATG	1 cut(s)	279
BseLI	CCNNNNNNNGG	2 cut(s)	544, 611
BseMI	GCAATG	1 cut(s)	186
BseMII	CTCAG	2 cut(s)	44, 262
BseNI	ACTGG	1 cut(s)	686
BseRI	GAGGAG	2 cut(s)	627, 889
BseSI	GKGCMC	1 cut(s)	686
BseX3I	CGGCCG	1 cut(s)	213
BseXI	GCAGC	1 cut(s)	790
BsgI	GTGCAG	1 cut(s)	754
Bsh1236I	CGCG	1 cut(s)	445
Bsh1285I	CGRYCG	1 cut(s)	216
BshFI	GGCC	3 cut(s)	215, 290, 494
BshNI	GGYRCC	1 cut(s)	681
BshTI	ACCGGT	1 cut(s)	758
BsiEI	CGRYCG	1 cut(s)	216
BsiSI	CCGG	3 cut(s)	234, 270, 759
BslI	CCNNNNNNNGG	2 cut(s)	544, 611
BsmAI	GTCTC	3 cut(s)	572, 641, 674
BsmI	GAATGC	2 cut(s)	173, 821
BsnI	GGCC	3 cut(s)	215, 290, 494
Bsp1286I	GDGCHC	1 cut(s)	686
Bsp143I	GATC	8 cut(s)	114, 172, 180, 209, 295, 747, 775, 845
Bsp1720I	GCTNAGC	1 cut(s)	248
BspACI	CCGC	3 cut(s)	445, 538, 677
BspANI	GGCC	3 cut(s)	215, 290, 494
BspCNI	CTCAG	2 cut(s)	43, 261
BspFNI	CGCG	1 cut(s)	445
BspLI	GGNNCC	2 cut(s)	125, 683
BspPI	GGATC	2 cut(s)	303, 853
BspT107I	GGYRCC	1 cut(s)	681
BsrDI	GCAATG	1 cut(s)	186
BsrFI	RCCGGY	1 cut(s)	758
BsrI	ACTGG	1 cut(s)	686
BssAI	RCCGGY	1 cut(s)	758
BssECI	CCNNGG	6 cut(s)	285, 291, 389, 605, 808, 859
BssMI	GATC	8 cut(s)	114, 172, 180, 209, 295, 747, 775, 845
BssT1I	CCWWGG	3 cut(s)	285, 291, 808
Bst2UI	CCWGG	2 cut(s)	390, 861
Bst4CI	ACNGT	6 cut(s)	91, 469, 511, 578, 668, 869
Bst6I	CTCTTC	2 cut(s)	50, 200
BstC8I	GCNNGC	2 cut(s)	245, 327
BstDEI	CTNAG	2 cut(s)	30, 248
BstDSI	CCRYGG	1 cut(s)	605
BstF5I	GGATG	1 cut(s)	279
BstFNI	CGCG	1 cut(s)	445
BstHHI	GCGC	1 cut(s)	445
BstKTI	GATC	8 cut(s)	117, 175, 183, 212, 298, 750, 778, 848
BstMAI	GTCTC	3 cut(s)	572, 641, 674
BstMBI	GATC	8 cut(s)	114, 172, 180, 209, 295, 747, 775, 845
BstMCI	CGRYCG	1 cut(s)	216
BstMWI	GCNNNNNNNGC	2 cut(s)	249, 258
BstNI	CCWGG	2 cut(s)	390, 861
BstNSI	RCATGY	1 cut(s)	277
BstSCI	CCNGG	2 cut(s)	388, 859
BstSFI	CTRYAG	1 cut(s)	868
BstSLI	GKGCMC	1 cut(s)	686
BstUI	CGCG	1 cut(s)	445
BstV1I	GCAGC	1 cut(s)	790
BstV2I	GAAGAC	1 cut(s)	369
BstX2I	RGATCY	4 cut(s)	114, 747, 775, 845
BstYI	RGATCY	4 cut(s)	114, 747, 775, 845
BstZI	CGGCCG	1 cut(s)	213
BsuI	GTATCC	1 cut(s)	748
BsuRI	GGCC	3 cut(s)	215, 290, 494
BtgI	CCRYGG	1 cut(s)	605
BtsCI	GGATG	1 cut(s)	279
BtsI	GCAGTG	1 cut(s)	603
BtsIMutI	CAGTG	3 cut(s)	516, 603, 693
Cac8I	GCNNGC	2 cut(s)	245, 327
CfoI	GCGC	1 cut(s)	445
Cfr10I	RCCGGY	1 cut(s)	758
Csp6I	GTAC	3 cut(s)	142, 257, 470
CspAI	ACCGGT	1 cut(s)	758
CspCI	CAANNNNNGTGG	2 cut(s)	58, 93
CviAII	CATG	5 cut(s)	120, 274, 333, 674, 728
CviQI	GTAC	3 cut(s)	142, 257, 470
DdeI	CTNAG	2 cut(s)	30, 248
DpnI	GATC	8 cut(s)	116, 174, 182, 211, 297, 749, 777, 847
DpnII	GATC	8 cut(s)	114, 172, 180, 209, 295, 747, 775, 845
EaeI	YGGCCR	2 cut(s)	213, 492
EagI	CGGCCG	1 cut(s)	213
Eam1104I	CTCTTC	2 cut(s)	50, 200
EarI	CTCTTC	2 cut(s)	50, 200
EclXI	CGGCCG	1 cut(s)	213
Eco130I	CCWWGG	3 cut(s)	285, 291, 808
Eco52I	CGGCCG	1 cut(s)	213
Eco57I	CTGAAG	3 cut(s)	224, 534, 616
EcoRII	CCWGG	2 cut(s)	388, 859
EcoT14I	CCWWGG	3 cut(s)	285, 291, 808
ErhI	CCWWGG	3 cut(s)	285, 291, 808
FaeI	CATG	5 cut(s)	123, 277, 336, 677, 731
FatI	CATG	5 cut(s)	119, 273, 332, 673, 727
FauI	CCCGC	2 cut(s)	438, 670
Fnu4HI	GCNGC	1 cut(s)	804
FokI	GGATG	1 cut(s)	266
Fsp4HI	GCNGC	1 cut(s)	804
FspBI	CTAG	2 cut(s)	15, 521
GlaI	GCGC	1 cut(s)	444
GluI	GCNGC	1 cut(s)	804
HaeIII	GGCC	3 cut(s)	215, 290, 494
HapII	CCGG	3 cut(s)	234, 270, 759
HhaI	GCGC	1 cut(s)	445
Hin1II	CATG	5 cut(s)	123, 277, 336, 677, 731
Hin6I	GCGC	1 cut(s)	443
HinP1I	GCGC	1 cut(s)	443
HincII	GTYRAC	2 cut(s)	94, 733
HindII	GTYRAC	2 cut(s)	94, 733
HindIII	AAGCTT	1 cut(s)	323
HinfI	GANTC	2 cut(s)	724, 734
HpaII	CCGG	3 cut(s)	234, 270, 759
HphI	GGTGA	6 cut(s)	55, 79, 148, 515, 527, 710
Hpy166II	GTNNAC	4 cut(s)	94, 142, 452, 733
Hpy188I	TCNGA	4 cut(s)	199, 240, 553, 574
Hpy188III	TCNNGA	1 cut(s)	656
Hpy8I	GTNNAC	4 cut(s)	94, 142, 452, 733
Hpy99I	CGWCG	1 cut(s)	221
HpyAV	CCTTC	6 cut(s)	62, 94, 108, 140, 632, 689
HpyCH4III	ACNGT	6 cut(s)	91, 469, 511, 578, 668, 869
HpyCH4V	TGCA	6 cut(s)	329, 563, 581, 596, 771, 819
HpyF10VI	GCNNNNNNNGC	2 cut(s)	249, 258
HpyF3I	CTNAG	2 cut(s)	30, 248
Hsp92II	CATG	5 cut(s)	123, 277, 336, 677, 731
HspAI	GCGC	1 cut(s)	443
Kzo9I	GATC	8 cut(s)	114, 172, 180, 209, 295, 747, 775, 845
LmnI	GCTCC	2 cut(s)	199, 272
Lsp1109I	GCAGC	1 cut(s)	790
LweI	GCATC	2 cut(s)	550, 607
MaeI	CTAG	2 cut(s)	15, 521
MaeIII	GTNAC	1 cut(s)	791
MalI	GATC	8 cut(s)	116, 174, 182, 211, 297, 749, 777, 847
MboI	GATC	8 cut(s)	114, 172, 180, 209, 295, 747, 775, 845
MboII	GAAGA	7 cut(s)	15, 16, 37, 40, 217, 374, 622
MflI	RGATCY	4 cut(s)	114, 747, 775, 845
MhlI	GDGCHC	1 cut(s)	686
MlsI	TGGCCA	1 cut(s)	494
MluCI	AATT	2 cut(s)	531, 591
MluNI	TGGCCA	1 cut(s)	494
MlyI	GAGTC	1 cut(s)	728
MmeI	TCCRAC	1 cut(s)	823
MnlI	CCTC	9 cut(s)	39, 53, 247, 310, 520, 528, 605, 866, 867
Mox20I	TGGCCA	1 cut(s)	494
MscI	TGGCCA	1 cut(s)	494
Msp20I	TGGCCA	1 cut(s)	494
MspI	CCGG	3 cut(s)	234, 270, 759
MspR9I	CCNGG	2 cut(s)	390, 861
Mva1269I	GAATGC	2 cut(s)	173, 821
MvaI	CCWGG	2 cut(s)	390, 861
MvnI	CGCG	1 cut(s)	445
MwoI	GCNNNNNNNGC	2 cut(s)	249, 258
NdeII	GATC	8 cut(s)	114, 172, 180, 209, 295, 747, 775, 845
NlaIII	CATG	5 cut(s)	123, 277, 336, 677, 731
NlaIV	GGNNCC	2 cut(s)	125, 683
NmuCI	GTSAC	1 cut(s)	791
NspI	RCATGY	1 cut(s)	277
PctI	GAATGC	2 cut(s)	173, 821
PfeI	GAWTC	1 cut(s)	724
PflFI	GACNNNGTC	1 cut(s)	431
PinAI	ACCGGT	1 cut(s)	758
PkrI	GCNGC	1 cut(s)	805
PleI	GAGTC	1 cut(s)	728
PpsI	GAGTC	1 cut(s)	728
Psp6I	CCWGG	2 cut(s)	388, 859
PspGI	CCWGG	2 cut(s)	388, 859
PspN4I	GGNNCC	2 cut(s)	125, 683
PsuI	RGATCY	4 cut(s)	114, 747, 775, 845
PsyI	GACNNNGTC	1 cut(s)	431
RsaI	GTAC	3 cut(s)	143, 258, 471
RsaNI	GTAC	3 cut(s)	142, 257, 470
SatI	GCNGC	1 cut(s)	804
Sau3AI	GATC	8 cut(s)	114, 172, 180, 209, 295, 747, 775, 845
SchI	GAGTC	1 cut(s)	728
ScrFI	CCNGG	2 cut(s)	390, 861
SduI	GDGCHC	1 cut(s)	686
SfaNI	GCATC	2 cut(s)	550, 607
SfcI	CTRYAG	1 cut(s)	868
Sse9I	AATT	2 cut(s)	531, 591
SsiI	CCGC	3 cut(s)	445, 538, 677
SspI	AATATT	1 cut(s)	439
SspMI	CTAG	2 cut(s)	15, 521
StyD4I	CCNGG	2 cut(s)	388, 859
StyI	CCWWGG	3 cut(s)	285, 291, 808
TaaI	ACNGT	6 cut(s)	91, 469, 511, 578, 668, 869
TasI	AATT	2 cut(s)	531, 591
TatI	WGTACW	1 cut(s)	469
TfiI	GAWTC	1 cut(s)	724
TscAI	CASTG	3 cut(s)	516, 603, 693
TseFI	GTSAC	1 cut(s)	791
TseI	GCWGC	1 cut(s)	803
Tsp45I	GTSAC	1 cut(s)	791
TspDTI	ATGAA	4 cut(s)	17, 268, 417, 716
TspGWI	ACGGA	1 cut(s)	622
TspRI	CASTG	3 cut(s)	516, 603, 693
Tth111I	GACNNNGTC	1 cut(s)	431
XapI	RAATTY	1 cut(s)	531
XceI	RCATGY	1 cut(s)	277
XspI	CTAG	2 cut(s)	15, 521

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.