Basic Information

Type: gene

Biological Identity

Species

arabidopsis_thaliana

Chromosome

Orthogroup ID

OG0008687

Physical Location & Seq

Genomic Coordinates Reverse (-)

6304171 .. 6306290

Gene Structure 2120 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

AT5G18900.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 897 bp

ATGGCTCGACGTGGATTATTGATTTCGTTCTTCGCTATCTTCTCCGTCCTGCTTCAATCTTCCACTTCTCTGATCAGTTCTTCTAGCGTCTTCGTCAATCCTTCCAAAGTCAAGCAGGTTTCATCGAAACCCAGGGCGTTTGTGTATGAAGGGTTTCTCACGGAATTGGAATGTGATCATATGGTCTCCCTTGCAAAAGCGAGCCTGAAGAGATCTGCTGTTGCTGATAATGATAGTGGAGAGAGCAAATTCAGCGAGGTTCGAACCAGCTCTGGCACCTTTATCTCCAAAGGAAAGGATCCCATTGTTTCTGGTATAGAAGATAAGATCTCCACTTGGACATTTCTTCCAAAAGAAAACGGGGAAGACATTCAGGTATTGAGATACGAGCACGGCCAAAAATACGATGCTCACTTTGATTACTTTCATGACAAAGTCAACATTGTCCGTGGTGGACATCGCATGGCAACAATTCTTATGTATCTATCCAATGTGACGAAAGGTGGAGAAACTGTATTCCCTGATGCAGAGATACCTTCTCGCCGAGTACTATCTGAAAATAAAGAAGACCTTTCTGATTGTGCCAAGAGAGGAATTGCTGTGAAACCAAGGAAAGGGGATGCTTTGTTGTTCTTCAACCTCCACCCAGACGCAATCCCGGACCCATTGAGCCTTCACGGTGGATGTCCTGTGATAGAAGGAGAGAAATGGTCGGCAACCAAGTGGATCCACGTAGACTCATTTGATAGGATCGTGACACCAAGCGGAAACTGCACGGATATGAACGAGAGCTGTGAGAGATGGGCAGTTCTTGGGGAATGCACAAAGAATCCAGAGTACATGGTTGGAACTACAGAGCTTCCTGGCTATTGCAGGCGAAGCTGTAAGGCTTGCTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0004656 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005737 GO:0005768 GO:0005783 GO:0005794 GO:0005802 GO:0006082 GO:0006464 GO:0006520 GO:0006575 GO:0006807 GO:0007275 GO:0008150 GO:0008152 GO:0009653 GO:0009888 GO:0009987 GO:0010015 GO:0010053 GO:0010054 GO:0012505 GO:0016491 GO:0016705 GO:0016706 GO:0018126 GO:0018193 GO:0018208 GO:0018401 GO:0019471 GO:0019511 GO:0019538 GO:0019752 GO:0019798 GO:0021700 GO:0022622 GO:0030154 GO:0031410 GO:0031543 GO:0031545 GO:0031982 GO:0031984 GO:0032501 GO:0032502 GO:0036211 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043412 GO:0043436 GO:0044237 GO:0044238 GO:0044260 GO:0044267 GO:0044281 GO:0044422 GO:0044424 GO:0044431 GO:0044444 GO:0044446 GO:0044464 GO:0048364 GO:0048468 GO:0048469 GO:0048731 GO:0048764 GO:0048765 GO:0048856 GO:0048869 GO:0051213 GO:0055114 GO:0071695 GO:0071704 GO:0080147 GO:0090558 GO:0090627 GO:0097708 GO:0098791 GO:0099402 GO:0140096 GO:1901564 GO:1901605 GO:1905392

KEGG Pathways

Metabolic & Signaling

ko00330 ko01100 map00330 map01100

Pfam Domains

Protein Families

2OG-FeII_Oxy_3 ShK

Protein Analysis

298

Amino Acids

33.06

Weight (kDa)

6.71

Isoelectric Point (pI)

50.26

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
2OG-FeII_Oxy	PF03171	122 - 244	7.5e-08	2OG-Fe(II) oxygenase superfamily
2OG-FeII_Oxy_3	PF13640	124 - 244	1.3e-18	2OG-Fe(II) oxygenase superfamily

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0008687)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G06300 AT5G18900
fragaria_vesca	FvH4_4g16790 FvH4_4g16790
malus_domestica	MD13G1176400.v1.1 MD16G1178200.v1.1
prunus_persica	Prupe.1G145500_v2.0.a1 Prupe.1G145500_v2.0.a1 Prupe.1G145500_v2.0.a1
pyrus_communis	pycom13g15220 pycom16g14970
rosa_chinensis	RchiOBHm_Chr4g0420361
rosa_laevigata	RLG00000007770
rosa_multiflora	Rmu_sc0002248.1_g000004 Rmu_sc0040667.1_g000002
rosa_roxburghii	Rroxscaffold_5G00363000
rosa_rugosa	Rorug04G0163500 Rorug04G0163500
rosa_samantha	Rh4AG224700 Rh4BG227700 Rh4CG239200 Rh4DG223200
rosa_wichuraiana	Rw4G019400

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc36I	ACCTGC	1 cut(s)	106
AccB1I	GGYRCC	1 cut(s)	275
AccI	GTMKAC	1 cut(s)	735
AciI	CCGC	1 cut(s)	765
AclWI	GGATC	5 cut(s)	293, 306, 721, 734, 758
AcoI	YGGCCR	1 cut(s)	394
AcsI	RAATTY	1 cut(s)	248
AcuI	CTGAAG	1 cut(s)	227
AfaI	GTAC	2 cut(s)	549, 839
AfiI	CCNNNNNNNGG	1 cut(s)	614
AgsI	TTSAA	2 cut(s)	56, 637
AjiI	CACGTC	1 cut(s)	11
AjnI	CCWGG	2 cut(s)	131, 862
AluBI	AGCT	4 cut(s)	270, 792, 859, 882
AluI	AGCT	4 cut(s)	270, 792, 859, 882
Alw21I	GWGCWC	1 cut(s)	393
Alw26I	GTCTC	1 cut(s)	190
AlwI	GGATC	5 cut(s)	293, 306, 721, 734, 758
AoxI	GGCC	1 cut(s)	394
ApoI	RAATTY	1 cut(s)	248
Asp700I	GAANNNNTTC	2 cut(s)	153, 369
AspS9I	GGNCC	1 cut(s)	661
AsuC2I	CCSGG	1 cut(s)	659
AsuII	TTCGAA	1 cut(s)	262
AvaII	GGWCC	1 cut(s)	661
BamHI	GGATCC	2 cut(s)	298, 726
BanI	GGYRCC	1 cut(s)	275
BbsI	GAAGAC	3 cut(s)	82, 372, 573
Bbv12I	GWGCWC	1 cut(s)	393
BccI	CCATC	1 cut(s)	795
BceAI	ACGGC	1 cut(s)	409
BciT130I	CCWGG	2 cut(s)	133, 864
BclI	TGATCA	2 cut(s)	72, 175
BcnI	CCSGG	1 cut(s)	659
BcoDI	GTCTC	1 cut(s)	190
BfaI	CTAG	2 cut(s)	84, 895
BfmI	CTRYAG	1 cut(s)	852
BfuAI	ACCTGC	1 cut(s)	106
BglII	AGATCT	2 cut(s)	212, 327
BmcAI	AGTACT	1 cut(s)	549
Bme1390I	CCNGG	3 cut(s)	133, 659, 864
Bme18I	GGWCC	1 cut(s)	661
BmgBI	CACGTC	1 cut(s)	11
BmgT120I	GGNCC	1 cut(s)	661
BmiI	GGNNCC	4 cut(s)	277, 300, 663, 728
BmrFI	CCNGG	3 cut(s)	133, 659, 864
BmsI	GCATC	3 cut(s)	397, 514, 610
BpiI	GAAGAC	3 cut(s)	82, 372, 573
Bpu14I	TTCGAA	1 cut(s)	262
BpuMI	CCSGG	1 cut(s)	659
BsaAI	YACGTR	1 cut(s)	733
BsaI	GGTCTC	1 cut(s)	190
BsaJI	CCNNGG	4 cut(s)	131, 132, 448, 608
BsaXI	ACNNNNNCTCC	2 cut(s)	498, 528
Bsc4I	CCNNNNNNNGG	1 cut(s)	614
BseBI	CCWGG	2 cut(s)	133, 864
BseDI	CCNNGG	4 cut(s)	131, 132, 448, 608
BseGI	GGATG	2 cut(s)	625, 689
BseLI	CCNNNNNNNGG	1 cut(s)	614
BsgI	GTGCAG	1 cut(s)	757
BshFI	GGCC	1 cut(s)	396
BshNI	GGYRCC	1 cut(s)	275
BsiHKAI	GWGCWC	1 cut(s)	393
BsiSI	CCGG	1 cut(s)	659
BslI	CCNNNNNNNGG	1 cut(s)	614
BsmAI	GTCTC	1 cut(s)	190
BsmI	GAATGC	1 cut(s)	824
BsnI	GGCC	1 cut(s)	396
Bso31I	GGTCTC	1 cut(s)	190
Bsp119I	TTCGAA	1 cut(s)	262
Bsp1286I	GDGCHC	1 cut(s)	393
Bsp143I	GATC	7 cut(s)	72, 175, 212, 298, 327, 726, 750
BspACI	CCGC	1 cut(s)	765
BspANI	GGCC	1 cut(s)	396
BspHI	TCATGA	1 cut(s)	427
BspLI	GGNNCC	4 cut(s)	277, 300, 663, 728
BspMI	ACCTGC	1 cut(s)	106
BspPI	GGATC	5 cut(s)	293, 306, 721, 734, 758
BspT104I	TTCGAA	1 cut(s)	262
BspT107I	GGYRCC	1 cut(s)	275
BspTNI	GGTCTC	1 cut(s)	190
BssECI	CCNNGG	4 cut(s)	131, 132, 448, 608
BssMI	GATC	7 cut(s)	72, 175, 212, 298, 327, 726, 750
BssT1I	CCWWGG	1 cut(s)	608
Bst2UI	CCWGG	2 cut(s)	133, 864
Bst4CI	ACNGT	2 cut(s)	514, 680
Bst6I	CTCTTC	1 cut(s)	203
BstBAI	YACGTR	1 cut(s)	733
BstBI	TTCGAA	1 cut(s)	262
BstC8I	GCNNGC	3 cut(s)	202, 875, 892
BstDSI	CCRYGG	1 cut(s)	448
BstF5I	GGATG	2 cut(s)	625, 689
BstKTI	GATC	7 cut(s)	75, 178, 215, 301, 330, 729, 753
BstMAI	GTCTC	1 cut(s)	190
BstMBI	GATC	7 cut(s)	72, 175, 212, 298, 327, 726, 750
BstMWI	GCNNNNNNNGC	3 cut(s)	252, 771, 879
BstNI	CCWGG	2 cut(s)	133, 864
BstSCI	CCNGG	3 cut(s)	131, 657, 862
BstSFI	CTRYAG	1 cut(s)	852
BstV2I	GAAGAC	3 cut(s)	82, 372, 573
BstX2I	RGATCY	4 cut(s)	212, 298, 327, 726
BstYI	RGATCY	4 cut(s)	212, 298, 327, 726
BsuRI	GGCC	1 cut(s)	396
BtgI	CCRYGG	1 cut(s)	448
BtgZI	GCGATG	1 cut(s)	443
BtrI	CACGTC	1 cut(s)	11
BtsCI	GGATG	2 cut(s)	625, 689
BveI	ACCTGC	1 cut(s)	106
Cac8I	GCNNGC	3 cut(s)	202, 875, 892
CciI	TCATGA	1 cut(s)	427
Cfr13I	GGNCC	1 cut(s)	661
CseI	GACGC	2 cut(s)	76, 659
Csp6I	GTAC	2 cut(s)	548, 838
CviAII	CATG	3 cut(s)	428, 463, 841
CviQI	GTAC	2 cut(s)	548, 838
DpnI	GATC	7 cut(s)	74, 177, 214, 300, 329, 728, 752
DpnII	GATC	7 cut(s)	72, 175, 212, 298, 327, 726, 750
EaeI	YGGCCR	1 cut(s)	394
Eam1104I	CTCTTC	1 cut(s)	203
EarI	CTCTTC	1 cut(s)	203
Eco130I	CCWWGG	1 cut(s)	608
Eco31I	GGTCTC	1 cut(s)	190
Eco47I	GGWCC	1 cut(s)	661
Eco57I	CTGAAG	1 cut(s)	227
EcoRII	CCWGG	2 cut(s)	131, 862
EcoT14I	CCWWGG	1 cut(s)	608
ErhI	CCWWGG	1 cut(s)	608
FaeI	CATG	3 cut(s)	431, 466, 844
FaiI	YATR	9 cut(s)	147, 180, 182, 317, 429, 464, 479, 782, 842
FalI	AAGNNNNNCTT	2 cut(s)	555, 587
FatI	CATG	3 cut(s)	427, 462, 840
FauNDI	CATATG	1 cut(s)	180
FbaI	TGATCA	2 cut(s)	72, 175
FblI	GTMKAC	1 cut(s)	735
FokI	GGATG	2 cut(s)	632, 696
FspBI	CTAG	2 cut(s)	84, 895
HaeIII	GGCC	1 cut(s)	396
HapII	CCGG	1 cut(s)	659
HgaI	GACGC	2 cut(s)	76, 659
Hin1II	CATG	3 cut(s)	431, 466, 844
HincII	GTYRAC	1 cut(s)	439
HindII	GTYRAC	1 cut(s)	439
HinfI	GANTC	2 cut(s)	737, 829
HpaII	CCGG	1 cut(s)	659
Hpy166II	GTNNAC	3 cut(s)	439, 455, 736
Hpy188I	TCNGA	3 cut(s)	72, 556, 577
Hpy188III	TCNNGA	3 cut(s)	428, 754, 833
Hpy8I	GTNNAC	3 cut(s)	439, 455, 736
Hpy99I	CGWCG	1 cut(s)	12
HpyAV	CCTTC	5 cut(s)	111, 143, 546, 683, 692
HpyCH4III	ACNGT	2 cut(s)	514, 680
HpyCH4IV	ACGT	2 cut(s)	10, 732
HpyCH4V	TGCA	5 cut(s)	194, 527, 774, 822, 873
HpyF10VI	GCNNNNNNNGC	3 cut(s)	252, 771, 879
HpySE526I	ACGT	2 cut(s)	10, 732
Hsp92II	CATG	3 cut(s)	431, 466, 844
Ksp22I	TGATCA	2 cut(s)	72, 175
Kzo9I	GATC	7 cut(s)	72, 175, 212, 298, 327, 726, 750
LweI	GCATC	3 cut(s)	397, 514, 610
MaeI	CTAG	2 cut(s)	84, 895
MaeII	ACGT	2 cut(s)	10, 732
MaeIII	GTNAC	2 cut(s)	493, 754
MalI	GATC	7 cut(s)	74, 177, 214, 300, 329, 728, 752
MboI	GATC	7 cut(s)	72, 175, 212, 298, 327, 726, 750
MflI	RGATCY	4 cut(s)	212, 298, 327, 726
MhlI	GDGCHC	1 cut(s)	393
MluCI	AATT	4 cut(s)	164, 248, 471, 594
MlyI	GAGTC	1 cut(s)	731
MmeI	TCCRAC	1 cut(s)	826
MnlI	CCTC	3 cut(s)	250, 584, 650
MroXI	GAANNNNTTC	2 cut(s)	153, 369
MslI	CAYNNNNRTG	1 cut(s)	779
MspI	CCGG	1 cut(s)	659
MspR9I	CCNGG	3 cut(s)	133, 659, 864
Mva1269I	GAATGC	1 cut(s)	824
MvaI	CCWGG	2 cut(s)	133, 864
MwoI	GCNNNNNNNGC	3 cut(s)	252, 771, 879
NciI	CCSGG	1 cut(s)	659
NdeI	CATATG	1 cut(s)	180
NdeII	GATC	7 cut(s)	72, 175, 212, 298, 327, 726, 750
NlaIII	CATG	3 cut(s)	431, 466, 844
NlaIV	GGNNCC	4 cut(s)	277, 300, 663, 728
NmeAIII	GCCGAG	1 cut(s)	569
NmuCI	GTSAC	2 cut(s)	493, 754
NspV	TTCGAA	1 cut(s)	262
PagI	TCATGA	1 cut(s)	427
PasI	CCCWGGG	1 cut(s)	132
PctI	GAATGC	1 cut(s)	824
PdmI	GAANNNNTTC	2 cut(s)	153, 369
PfeI	GAWTC	1 cut(s)	829
PflFI	GACNNNGTC	1 cut(s)	434
PfoI	TCCNGGA	1 cut(s)	657
PleI	GAGTC	1 cut(s)	731
PpsI	GAGTC	1 cut(s)	731
Ppu21I	YACGTR	1 cut(s)	733
Psp6I	CCWGG	2 cut(s)	131, 862
PspGI	CCWGG	2 cut(s)	131, 862
PspN4I	GGNNCC	4 cut(s)	277, 300, 663, 728
PspPI	GGNCC	1 cut(s)	661
PsuI	RGATCY	4 cut(s)	212, 298, 327, 726
PsyI	GACNNNGTC	1 cut(s)	434
RsaI	GTAC	2 cut(s)	549, 839
RsaNI	GTAC	2 cut(s)	548, 838
RseI	CAYNNNNRTG	1 cut(s)	779
Sau3AI	GATC	7 cut(s)	72, 175, 212, 298, 327, 726, 750
Sau96I	GGNCC	1 cut(s)	661
ScaI	AGTACT	1 cut(s)	549
SchI	GAGTC	1 cut(s)	731
ScrFI	CCNGG	3 cut(s)	133, 659, 864
SduI	GDGCHC	1 cut(s)	393
SfaNI	GCATC	3 cut(s)	397, 514, 610
SfcI	CTRYAG	1 cut(s)	852
SfuI	TTCGAA	1 cut(s)	262
SinI	GGWCC	1 cut(s)	661
SmiMI	CAYNNNNRTG	1 cut(s)	779
Sse9I	AATT	4 cut(s)	164, 248, 471, 594
SsiI	CCGC	1 cut(s)	765
SspMI	CTAG	2 cut(s)	84, 895
StyD4I	CCNGG	3 cut(s)	131, 657, 862
StyI	CCWWGG	1 cut(s)	608
TaaI	ACNGT	2 cut(s)	514, 680
TaiI	ACGT	2 cut(s)	13, 735
TaqI	TCGA	3 cut(s)	7, 125, 262
TasI	AATT	4 cut(s)	164, 248, 471, 594
TatI	WGTACW	2 cut(s)	547, 837
TfiI	GAWTC	1 cut(s)	829
TseFI	GTSAC	2 cut(s)	493, 754
Tsp45I	GTSAC	2 cut(s)	493, 754
TspDTI	ATGAA	4 cut(s)	111, 162, 416, 797
TspGWI	ACGGA	4 cut(s)	34, 176, 437, 791
Tth111I	GACNNNGTC	1 cut(s)	434
VpaK11BI	GGWCC	1 cut(s)	661
XapI	RAATTY	1 cut(s)	248
XmiI	GTMKAC	1 cut(s)	735
XmnI	GAANNNNTTC	2 cut(s)	153, 369
XspI	CTAG	2 cut(s)	84, 895
ZrmI	AGTACT	1 cut(s)	549

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.