Basic Information

Type: gene

Biological Identity

Species

prunus_persica

Chromosome

Pp01

Orthogroup ID

OG0008687

Physical Location & Seq

Genomic Coordinates Reverse (-)

11423524 .. 11426587

Gene Structure 3064 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Prupe.1G145500.3

Sequence Viewer

CDS Protein Promoter (2k)

Length: 894 bp

ATGACTAGGGTTTGGCTTCAGCTGTTCTTCTTCTTCTTCCTGCTCTCAATCTCCTCCAGCTCCTACGCTGCTTCACCACACACCTTCACAGTCAATCCTTCTAAAGTCAGACAGATCTCATGGAACCCTAGAGCTTTCGTGTACGAAGGTTTGCTCACGGACGCAGAGTGCGATCACTTGATCTCCATCGCGAAATCGGAGCTGAAGAGATCTGCCGTGGCCGATAACTTGTCCGGTCAGAGCAAGCTCAGCGAGGTGCGGACCAGCTCCGGCATGTTCATCCCCAAGGCCAAGGATCCTATTGTTGCTGGTATTGAGGACAAGATTGCAACATGGACATTTCTTCCAAAAGAAAATGGAGAAGACATACAAGTATTGAGATATGAGCCTGGGCAGAAATATGAACCACACTATGATTACTTTGCCGACAAAGTCAATATTGCCAGGGGGGGACATCGCATAGCAACTGTACTGATGTATCTTACTGATGTGACCAGAGGTGGTGAAACAGTGTTCCCTGAAGCAGAGGTACCTTCACGCCGTAAGGCTTCAGAAGTAGATCACAGTCTCTCTGAGTGTGCAAAGAAAGGAATTGCAGTGAAACCACGAAGAGGAGATGCCCTTCTTTTCTTCAGTCTCACCCCACACGCTGTTCCAGACGAAAATAGTCTCCATGCTGGGTGCCCAGTGATTGAAGGAGAGAAATGGTCAGCAACAAAGTGGATTCATGTCGACTCATTTGACAAGAACTTGGATGCCAGCGGGAACTGTGCAGATCTGAATGAAAGTTGTGAGAGATGGGCTGCCCTTGGAGAATGCACCAAGAACTCAGAGTATATGGTTGGATCGCCTGATCTCCCTGGCTACTGTAGGAGGAGTTGTAAGGTATGTTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0004656 GO:0006082 GO:0006464 GO:0006520 GO:0006575 GO:0006807 GO:0008150 GO:0008152 GO:0009987 GO:0016491 GO:0016705 GO:0016706 GO:0018126 GO:0018193 GO:0018208 GO:0018401 GO:0019471 GO:0019511 GO:0019538 GO:0019752 GO:0019798 GO:0031543 GO:0031545 GO:0036211 GO:0043170 GO:0043412 GO:0043436 GO:0044237 GO:0044238 GO:0044260 GO:0044267 GO:0044281 GO:0051213 GO:0055114 GO:0071704 GO:0140096 GO:1901564 GO:1901605

KEGG Pathways

Metabolic & Signaling

ko00330 ko01100 map00330 map01100

Pfam Domains

Protein Families

2OG-FeII_Oxy_3 ShK

Protein Analysis

298

Amino Acids

33.07

Weight (kDa)

6.26

Isoelectric Point (pI)

52.61

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0008687)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G06300 AT5G18900
fragaria_vesca	FvH4_4g16790 FvH4_4g16790
malus_domestica	MD13G1176400.v1.1 MD16G1178200.v1.1
prunus_persica	Prupe.1G145500_v2.0.a1 Prupe.1G145500_v2.0.a1 Prupe.1G145500_v2.0.a1
pyrus_communis	pycom13g15220 pycom16g14970
rosa_chinensis	RchiOBHm_Chr4g0420361
rosa_laevigata	RLG00000007770
rosa_multiflora	Rmu_sc0002248.1_g000004 Rmu_sc0040667.1_g000002
rosa_roxburghii	Rroxscaffold_5G00363000
rosa_rugosa	Rorug04G0163500 Rorug04G0163500
rosa_samantha	Rh4AG224700 Rh4BG227700 Rh4CG239200 Rh4DG223200
rosa_wichuraiana	Rw4G019400

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc65I	GGTACC	1 cut(s)	529
AccB1I	GGYRCC	2 cut(s)	529, 681
AccI	GTMKAC	1 cut(s)	732
AccII	CGCG	1 cut(s)	191
AciI	CCGC	2 cut(s)	259, 762
AclWI	GGATC	3 cut(s)	290, 303, 853
AcoI	YGGCCR	1 cut(s)	219
AcuI	CTGAAG	4 cut(s)	224, 534, 540, 616
AfaI	GTAC	3 cut(s)	143, 471, 531
AfiI	CCNNNNNNNGG	1 cut(s)	611
AgsI	TTSAA	1 cut(s)	695
AjnI	CCWGG	3 cut(s)	388, 443, 859
AluBI	AGCT	6 cut(s)	22, 60, 134, 202, 247, 267
AluI	AGCT	6 cut(s)	22, 60, 134, 202, 247, 267
Alw26I	GTCTC	3 cut(s)	572, 641, 674
AlwI	GGATC	3 cut(s)	290, 303, 853
AoxI	GGCC	2 cut(s)	219, 288
ApeKI	GCWGC	2 cut(s)	68, 803
Asp718I	GGTACC	1 cut(s)	529
AspS9I	GGNCC	1 cut(s)	261
AsuHPI	GGTGA	3 cut(s)	66, 515, 631
AvaII	GGWCC	1 cut(s)	261
BaeGI	GKGCMC	1 cut(s)	686
BaeI	ACNNNNGTAYC	2 cut(s)	461, 494
BamHI	GGATCC	1 cut(s)	295
BanI	GGYRCC	2 cut(s)	529, 681
BarI	GAAGNNNNNNTAC	2 cut(s)	513, 545
BbsI	GAAGAC	1 cut(s)	369
BbvI	GCAGC	2 cut(s)	55, 790
BccI	CCATC	2 cut(s)	194, 792
BceAI	ACGGC	2 cut(s)	200, 525
BciT130I	CCWGG	3 cut(s)	390, 445, 861
BcoDI	GTCTC	3 cut(s)	572, 641, 674
BfaI	CTAG	2 cut(s)	6, 129
BfmI	CTRYAG	1 cut(s)	868
BglII	AGATCT	3 cut(s)	114, 209, 775
BisI	GCNGC	2 cut(s)	69, 804
BlpI	GCTNAGC	1 cut(s)	248
BlsI	GCNGC	2 cut(s)	70, 805
Bme1390I	CCNGG	3 cut(s)	390, 445, 861
Bme18I	GGWCC	1 cut(s)	261
BmgT120I	GGNCC	1 cut(s)	261
BmiI	GGNNCC	4 cut(s)	125, 297, 531, 683
BmrFI	CCNGG	3 cut(s)	390, 445, 861
BmrI	ACTGGG	1 cut(s)	680
BmsI	GCATC	2 cut(s)	607, 745
BmuI	ACTGGG	1 cut(s)	680
BpiI	GAAGAC	1 cut(s)	369
BpmI	CTGGAG	1 cut(s)	40
Bpu1102I	GCTNAGC	1 cut(s)	248
BsaBI	GATNNNNATC	1 cut(s)	185
BsaJI	CCNNGG	7 cut(s)	216, 285, 291, 389, 444, 808, 859
BsaWI	WCCGGW	1 cut(s)	233
BsaXI	ACNNNNNCTCC	3 cut(s)	167, 197, 865
Bsc4I	CCNNNNNNNGG	1 cut(s)	611
Bse1I	ACTGG	1 cut(s)	686
Bse8I	GATNNNNATC	1 cut(s)	185
BseBI	CCWGG	3 cut(s)	390, 445, 861
BseDI	CCNNGG	7 cut(s)	216, 285, 291, 389, 444, 808, 859
BseGI	GGATG	2 cut(s)	279, 760
BseJI	GATNNNNATC	1 cut(s)	185
BseLI	CCNNNNNNNGG	1 cut(s)	611
BseMII	CTCAG	3 cut(s)	262, 564, 843
BseNI	ACTGG	1 cut(s)	686
BseRI	GAGGAG	3 cut(s)	43, 627, 889
BseSI	GKGCMC	1 cut(s)	686
BseXI	GCAGC	2 cut(s)	55, 790
BseYI	CCCAGC	1 cut(s)	677
BsgI	GTGCAG	1 cut(s)	792
Bsh1236I	CGCG	1 cut(s)	191
BshFI	GGCC	2 cut(s)	221, 290
BshNI	GGYRCC	2 cut(s)	529, 681
BsiSI	CCGG	2 cut(s)	234, 270
BslFI	GGGAC	1 cut(s)	465
BslI	CCNNNNNNNGG	1 cut(s)	611
BsmAI	GTCTC	3 cut(s)	572, 641, 674
BsmFI	GGGAC	1 cut(s)	465
BsmI	GAATGC	1 cut(s)	821
BsnI	GGCC	2 cut(s)	221, 290
Bsp1286I	GDGCHC	1 cut(s)	686
Bsp143I	GATC	9 cut(s)	114, 172, 180, 209, 295, 559, 775, 845, 853
Bsp1720I	GCTNAGC	1 cut(s)	248
Bsp68I	TCGCGA	1 cut(s)	191
BspACI	CCGC	2 cut(s)	259, 762
BspANI	GGCC	2 cut(s)	221, 290
BspCNI	CTCAG	3 cut(s)	261, 565, 842
BspFNI	CGCG	1 cut(s)	191
BspLI	GGNNCC	4 cut(s)	125, 297, 531, 683
BspPI	GGATC	3 cut(s)	290, 303, 853
BspT107I	GGYRCC	2 cut(s)	529, 681
BsrI	ACTGG	1 cut(s)	686
BssECI	CCNNGG	7 cut(s)	216, 285, 291, 389, 444, 808, 859
BssMI	GATC	9 cut(s)	114, 172, 180, 209, 295, 559, 775, 845, 853
BssT1I	CCWWGG	3 cut(s)	285, 291, 808
Bst2UI	CCWGG	3 cut(s)	390, 445, 861
Bst4CI	ACNGT	6 cut(s)	91, 469, 511, 566, 770, 869
Bst6I	CTCTTC	2 cut(s)	200, 604
BstC8I	GCNNGC	2 cut(s)	245, 760
BstDEI	CTNAG	3 cut(s)	248, 573, 829
BstDSI	CCRYGG	1 cut(s)	216
BstF5I	GGATG	2 cut(s)	279, 760
BstFNI	CGCG	1 cut(s)	191
BstKTI	GATC	9 cut(s)	117, 175, 183, 212, 298, 562, 778, 848, 856
BstMAI	GTCTC	3 cut(s)	572, 641, 674
BstMBI	GATC	9 cut(s)	114, 172, 180, 209, 295, 559, 775, 845, 853
BstMWI	GCNNNNNNNGC	1 cut(s)	249
BstNI	CCWGG	3 cut(s)	390, 445, 861
BstNSI	RCATGY	1 cut(s)	277
BstSCI	CCNGG	3 cut(s)	388, 443, 859
BstSFI	CTRYAG	1 cut(s)	868
BstSLI	GKGCMC	1 cut(s)	686
BstUI	CGCG	1 cut(s)	191
BstV1I	GCAGC	2 cut(s)	55, 790
BstV2I	GAAGAC	1 cut(s)	369
BstX2I	RGATCY	4 cut(s)	114, 209, 295, 775
BstYI	RGATCY	4 cut(s)	114, 209, 295, 775
BsuRI	GGCC	2 cut(s)	221, 290
BtgI	CCRYGG	1 cut(s)	216
BtgZI	GCGATG	2 cut(s)	172, 440
BtsCI	GGATG	2 cut(s)	279, 760
BtsI	GCAGTG	1 cut(s)	603
BtsIMutI	CAGTG	3 cut(s)	516, 603, 693
BtuMI	TCGCGA	1 cut(s)	191
Cac8I	GCNNGC	2 cut(s)	245, 760
Cfr13I	GGNCC	1 cut(s)	261
CseI	GACGC	1 cut(s)	170
Csp6I	GTAC	3 cut(s)	142, 470, 530
CviAII	CATG	5 cut(s)	120, 274, 333, 674, 728
CviQI	GTAC	3 cut(s)	142, 470, 530
DdeI	CTNAG	3 cut(s)	248, 573, 829
DpnI	GATC	9 cut(s)	116, 174, 182, 211, 297, 561, 777, 847, 855
DpnII	GATC	9 cut(s)	114, 172, 180, 209, 295, 559, 775, 845, 853
EaeI	YGGCCR	1 cut(s)	219
Eam1104I	CTCTTC	2 cut(s)	200, 604
EarI	CTCTTC	2 cut(s)	200, 604
Eco130I	CCWWGG	3 cut(s)	285, 291, 808
Eco47I	GGWCC	1 cut(s)	261
Eco57I	CTGAAG	4 cut(s)	224, 534, 540, 616
EcoRII	CCWGG	3 cut(s)	388, 443, 859
EcoT14I	CCWWGG	3 cut(s)	285, 291, 808
ErhI	CCWWGG	3 cut(s)	285, 291, 808
FaeI	CATG	5 cut(s)	123, 277, 336, 677, 731
FaqI	GGGAC	1 cut(s)	465
FatI	CATG	5 cut(s)	119, 273, 332, 673, 727
FauI	CCCGC	1 cut(s)	755
FblI	GTMKAC	1 cut(s)	732
Fnu4HI	GCNGC	2 cut(s)	69, 804
FokI	GGATG	2 cut(s)	266, 767
Fsp4HI	GCNGC	2 cut(s)	69, 804
FspBI	CTAG	2 cut(s)	6, 129
GluI	GCNGC	2 cut(s)	69, 804
GsaI	CCCAGC	1 cut(s)	681
GsuI	CTGGAG	1 cut(s)	40
HaeIII	GGCC	2 cut(s)	221, 290
HapII	CCGG	2 cut(s)	234, 270
HgaI	GACGC	1 cut(s)	170
Hin1II	CATG	5 cut(s)	123, 277, 336, 677, 731
HincII	GTYRAC	1 cut(s)	733
HindII	GTYRAC	1 cut(s)	733
HinfI	GANTC	2 cut(s)	724, 734
HpaII	CCGG	2 cut(s)	234, 270
HphI	GGTGA	3 cut(s)	66, 515, 631
Hpy166II	GTNNAC	2 cut(s)	142, 733
Hpy188I	TCNGA	7 cut(s)	110, 199, 240, 553, 574, 780, 832
Hpy188III	TCNNGA	2 cut(s)	190, 656
Hpy8I	GTNNAC	2 cut(s)	142, 733
HpyAV	CCTTC	6 cut(s)	94, 108, 140, 543, 632, 689
HpyCH4III	ACNGT	6 cut(s)	91, 469, 511, 566, 770, 869
HpyCH4V	TGCA	5 cut(s)	329, 581, 596, 773, 819
HpyF10VI	GCNNNNNNNGC	1 cut(s)	249
HpyF3I	CTNAG	3 cut(s)	248, 573, 829
Hsp92II	CATG	5 cut(s)	123, 277, 336, 677, 731
KpnI	GGTACC	1 cut(s)	533
Kzo9I	GATC	9 cut(s)	114, 172, 180, 209, 295, 559, 775, 845, 853
LmnI	GCTCC	3 cut(s)	65, 199, 272
Lsp1109I	GCAGC	2 cut(s)	55, 790
LweI	GCATC	2 cut(s)	607, 745
MaeI	CTAG	2 cut(s)	6, 129
MaeIII	GTNAC	1 cut(s)	490
MalI	GATC	9 cut(s)	116, 174, 182, 211, 297, 561, 777, 847, 855
MboI	GATC	9 cut(s)	114, 172, 180, 209, 295, 559, 775, 845, 853
MboII	GAAGA	9 cut(s)	19, 22, 25, 28, 217, 335, 374, 621, 622
MflI	RGATCY	4 cut(s)	114, 209, 295, 775
MhlI	GDGCHC	1 cut(s)	686
MluCI	AATT	1 cut(s)	591
MlyI	GAGTC	1 cut(s)	728
MmeI	TCCRAC	1 cut(s)	823
MnlI	CCTC	7 cut(s)	64, 247, 310, 491, 520, 605, 867
MspA1I	CMGCKG	2 cut(s)	22, 762
MspI	CCGG	2 cut(s)	234, 270
MspR9I	CCNGG	3 cut(s)	390, 445, 861
Mva1269I	GAATGC	1 cut(s)	821
MvaI	CCWGG	3 cut(s)	390, 445, 861
MvnI	CGCG	1 cut(s)	191
MwoI	GCNNNNNNNGC	1 cut(s)	249
NdeII	GATC	9 cut(s)	114, 172, 180, 209, 295, 559, 775, 845, 853
NlaIII	CATG	5 cut(s)	123, 277, 336, 677, 731
NlaIV	GGNNCC	4 cut(s)	125, 297, 531, 683
NmuCI	GTSAC	1 cut(s)	490
NruI	TCGCGA	1 cut(s)	191
NspI	RCATGY	1 cut(s)	277
PcsI	WCGNNNNNNNCGW	1 cut(s)	168
PctI	GAATGC	1 cut(s)	821
PfeI	GAWTC	1 cut(s)	724
PflFI	GACNNNGTC	1 cut(s)	431
PkrI	GCNGC	2 cut(s)	70, 805
PleI	GAGTC	1 cut(s)	728
PpsI	GAGTC	1 cut(s)	728
Psp6I	CCWGG	3 cut(s)	388, 443, 859
PspFI	CCCAGC	1 cut(s)	677
PspGI	CCWGG	3 cut(s)	388, 443, 859
PspN4I	GGNNCC	4 cut(s)	125, 297, 531, 683
PspPI	GGNCC	1 cut(s)	261
PsuI	RGATCY	4 cut(s)	114, 209, 295, 775
PsyI	GACNNNGTC	1 cut(s)	431
PvuII	CAGCTG	1 cut(s)	22
RruI	TCGCGA	1 cut(s)	191
RsaI	GTAC	3 cut(s)	143, 471, 531
RsaNI	GTAC	3 cut(s)	142, 470, 530
SalI	GTCGAC	1 cut(s)	731
SatI	GCNGC	2 cut(s)	69, 804
Sau3AI	GATC	9 cut(s)	114, 172, 180, 209, 295, 559, 775, 845, 853
Sau96I	GGNCC	1 cut(s)	261
SchI	GAGTC	1 cut(s)	728
ScrFI	CCNGG	3 cut(s)	390, 445, 861
SduI	GDGCHC	1 cut(s)	686
SfaNI	GCATC	2 cut(s)	607, 745
SfcI	CTRYAG	1 cut(s)	868
SinI	GGWCC	1 cut(s)	261
Sse9I	AATT	1 cut(s)	591
SsiI	CCGC	2 cut(s)	259, 762
SspI	AATATT	1 cut(s)	439
SspMI	CTAG	2 cut(s)	6, 129
StyD4I	CCNGG	3 cut(s)	388, 443, 859
StyI	CCWWGG	3 cut(s)	285, 291, 808
TaaI	ACNGT	6 cut(s)	91, 469, 511, 566, 770, 869
TaqI	TCGA	1 cut(s)	732
TasI	AATT	1 cut(s)	591
TatI	WGTACW	1 cut(s)	469
TfiI	GAWTC	1 cut(s)	724
TscAI	CASTG	3 cut(s)	516, 603, 693
TseFI	GTSAC	1 cut(s)	490
TseI	GCWGC	2 cut(s)	68, 803
Tsp45I	GTSAC	1 cut(s)	490
TspDTI	ATGAA	4 cut(s)	268, 417, 716, 798
TspGWI	ACGGA	1 cut(s)	173
TspRI	CASTG	3 cut(s)	516, 603, 693
Tth111I	GACNNNGTC	1 cut(s)	431
VpaK11BI	GGWCC	1 cut(s)	261
XceI	RCATGY	1 cut(s)	277
XmiI	GTMKAC	1 cut(s)	732
XspI	CTAG	2 cut(s)	6, 129

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.