Basic Information

Type: gene

Biological Identity

Species

malus_domestica

Chromosome

Chr16

Orthogroup ID

OG0008687

Physical Location & Seq

Genomic Coordinates Reverse (-)

15217426 .. 15220540

Gene Structure 3115 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

MD16G1178200.v1.1.491

Sequence Viewer

CDS Protein Promoter (2k)

Length: 897 bp

ATGACTAGGGCTTGCCTTCACCTCCTCCTCCTCCTCCTCTTCTTCTTCCTGCTCTCAATCTGCTCCACCTCCTCTTCTGCTTCCACCTTCACCGTCAATCCGTCCAAAGTGAAACAGATCTCATGGAACCCTAGAGCTTTCGTGTACGAAGGTCTGCTGACGGACGCCGAGTGTGATCACTTGATCTCCATCGCGAAATCGGAGCTGAAGAGATCCGCCGTCGCCGATAACTTGTCCGGTCAGAGCAAGCTCAGCGAGGTCCGGACCAGCTCCGGAATGTTCATTCCCAAGGCCAAGGATCCCATTGTTGCTGGTATTGAGGATAAGCTTGCAACATGGACATTTCTTCCAAAAGAAAATGGTGAAGACATACAAGTATTGAGATATGAACCTGGGCAGAAATATGCACCACACTATGATTACTTTGTTGACAAGGTCAATATTGCTAGGGGTGGACACCGCGTAGCAACTGTACTGATGTATCTCACTGATGTGGCCAAAGGTGGTGAAACTGTGTTCCCTGAAGCAGAGATACCTTCACGCCGTAAGGCTGCAGAAATAGATCACAGTCTCTCTGAGTGTGCAAAGAAAGGAATTGCAGTGAAACCACGACGAGGAGATGCCCTTCTTTTCTTCAGTCTCACCCCACATGCTGTTCCAGACCCGAACAGTCTCCATGCGGGTTGCCCAGTGATTGAAGGTGAGAAATGGTCAGCAACGAAGTGGATTCATGTTGACTCGTTTGACAAGAACTTGGATGCTGGCGGGAACTGTGGAGATCTGAATGAGAGTTGTGAGAGATGGGCTGCCCTTGGGGAATGCACCAAGAACAGAGAGTATATGGTTGGAACTCCCGACCTTCCTGGCTACTGTAGGAGGAGTTGTAAGGTATGTTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0004656 GO:0006082 GO:0006464 GO:0006520 GO:0006575 GO:0006807 GO:0008150 GO:0008152 GO:0009987 GO:0016491 GO:0016705 GO:0016706 GO:0018126 GO:0018193 GO:0018208 GO:0018401 GO:0019471 GO:0019511 GO:0019538 GO:0019752 GO:0019798 GO:0031543 GO:0031545 GO:0036211 GO:0043170 GO:0043412 GO:0043436 GO:0044237 GO:0044238 GO:0044260 GO:0044267 GO:0044281 GO:0051213 GO:0055114 GO:0071704 GO:0140096 GO:1901564 GO:1901605

KEGG Pathways

Metabolic & Signaling

ko00330 ko01100 map00330 map01100

Pfam Domains

Protein Families

2OG-FeII_Oxy_3 ShK

Protein Analysis

299

Amino Acids

32.86

Weight (kDa)

7.05

Isoelectric Point (pI)

50.28

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
2OG-FeII_Oxy	PF03171	122 - 244	1.3e-08	2OG-Fe(II) oxygenase superfamily
2OG-FeII_Oxy_3	PF13640	124 - 244	1.2e-18	2OG-Fe(II) oxygenase superfamily

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0008687)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G06300 AT5G18900
fragaria_vesca	FvH4_4g16790 FvH4_4g16790
malus_domestica	MD13G1176400.v1.1 MD16G1178200.v1.1
prunus_persica	Prupe.1G145500_v2.0.a1 Prupe.1G145500_v2.0.a1 Prupe.1G145500_v2.0.a1
pyrus_communis	pycom13g15220 pycom16g14970
rosa_chinensis	RchiOBHm_Chr4g0420361
rosa_laevigata	RLG00000007770
rosa_multiflora	Rmu_sc0002248.1_g000004 Rmu_sc0040667.1_g000002
rosa_roxburghii	Rroxscaffold_5G00363000
rosa_rugosa	Rorug04G0163500 Rorug04G0163500
rosa_samantha	Rh4AG224700 Rh4BG227700 Rh4CG239200 Rh4DG223200
rosa_wichuraiana	Rw4G019400

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccII	CGCG	2 cut(s)	194, 462
AccIII	TCCGGA	2 cut(s)	261, 272
AciI	CCGC	4 cut(s)	216, 460, 680, 765
AclWI	GGATC	3 cut(s)	207, 293, 306
AcoI	YGGCCR	1 cut(s)	495
AcuI	CTGAAG	3 cut(s)	227, 543, 619
AcyI	GRCGYC	1 cut(s)	165
AfaI	GTAC	2 cut(s)	146, 474
AfiI	CCNNNNNNNGG	1 cut(s)	614
AgsI	TTSAA	1 cut(s)	698
AjnI	CCWGG	2 cut(s)	391, 862
AleI	CACNNNNGTG	1 cut(s)	491
AluBI	AGCT	5 cut(s)	137, 205, 250, 270, 328
AluI	AGCT	5 cut(s)	137, 205, 250, 270, 328
Alw26I	GTCTC	3 cut(s)	575, 644, 677
AlwI	GGATC	3 cut(s)	207, 293, 306
Aor13HI	TCCGGA	2 cut(s)	261, 272
AoxI	GGCC	2 cut(s)	291, 495
ApeKI	GCWGC	2 cut(s)	551, 806
AspS9I	GGNCC	2 cut(s)	259, 264
AsuHPI	GGTGA	6 cut(s)	11, 82, 374, 518, 634, 713
AvaII	GGWCC	2 cut(s)	259, 264
BaeI	ACNNNNGTAYC	2 cut(s)	464, 497
BalI	TGGCCA	1 cut(s)	497
BamHI	GGATCC	1 cut(s)	298
BarI	GAAGNNNNNNTAC	2 cut(s)	516, 548
BbsI	GAAGAC	1 cut(s)	372
BbvI	GCAGC	2 cut(s)	538, 793
BccI	CCATC	2 cut(s)	197, 795
BceAI	ACGGC	2 cut(s)	203, 528
BciT130I	CCWGG	2 cut(s)	393, 864
BclI	TGATCA	1 cut(s)	175
BcoDI	GTCTC	3 cut(s)	575, 644, 677
BfaI	CTAG	3 cut(s)	6, 132, 447
BfmI	CTRYAG	2 cut(s)	552, 871
BglII	AGATCT	2 cut(s)	117, 778
BisI	GCNGC	2 cut(s)	552, 807
BlpI	GCTNAGC	1 cut(s)	251
BlsI	GCNGC	2 cut(s)	553, 808
Bme1390I	CCNGG	2 cut(s)	393, 864
Bme18I	GGWCC	2 cut(s)	259, 264
BmgT120I	GGNCC	2 cut(s)	259, 264
BmiI	GGNNCC	2 cut(s)	128, 300
BmrFI	CCNGG	2 cut(s)	393, 864
BmrI	ACTGGG	1 cut(s)	683
BmsI	GCATC	2 cut(s)	610, 748
BmuI	ACTGGG	1 cut(s)	683
BpiI	GAAGAC	1 cut(s)	372
Bpu1102I	GCTNAGC	1 cut(s)	251
BsaBI	GATNNNNATC	1 cut(s)	188
BsaHI	GRCGYC	1 cut(s)	165
BsaJI	CCNNGG	4 cut(s)	288, 294, 392, 811
BsaWI	WCCGGW	3 cut(s)	236, 261, 272
BsaXI	ACNNNNNCTCC	3 cut(s)	170, 200, 868
Bsc4I	CCNNNNNNNGG	1 cut(s)	614
Bse1I	ACTGG	1 cut(s)	689
Bse8I	GATNNNNATC	1 cut(s)	188
BseAI	TCCGGA	2 cut(s)	261, 272
BseBI	CCWGG	2 cut(s)	393, 864
BseDI	CCNNGG	4 cut(s)	288, 294, 392, 811
BseGI	GGATG	1 cut(s)	763
BseJI	GATNNNNATC	1 cut(s)	188
BseLI	CCNNNNNNNGG	1 cut(s)	614
BseMII	CTCAG	2 cut(s)	265, 567
BseNI	ACTGG	1 cut(s)	689
BseRI	GAGGAG	8 cut(s)	14, 17, 20, 23, 26, 61, 630, 892
BseXI	GCAGC	2 cut(s)	538, 793
Bsh1236I	CGCG	2 cut(s)	194, 462
BshFI	GGCC	2 cut(s)	293, 497
BsiSI	CCGG	3 cut(s)	237, 262, 273
BslI	CCNNNNNNNGG	1 cut(s)	614
BsmAI	GTCTC	3 cut(s)	575, 644, 677
BsmI	GAATGC	1 cut(s)	824
BsnI	GGCC	2 cut(s)	293, 497
Bsp13I	TCCGGA	2 cut(s)	261, 272
Bsp143I	GATC	7 cut(s)	117, 175, 183, 212, 298, 562, 778
Bsp1720I	GCTNAGC	1 cut(s)	251
Bsp68I	TCGCGA	1 cut(s)	194
BspACI	CCGC	4 cut(s)	216, 460, 680, 765
BspANI	GGCC	2 cut(s)	293, 497
BspCNI	CTCAG	2 cut(s)	264, 568
BspEI	TCCGGA	2 cut(s)	261, 272
BspFNI	CGCG	2 cut(s)	194, 462
BspLI	GGNNCC	2 cut(s)	128, 300
BspMAI	CTGCAG	1 cut(s)	556
BspPI	GGATC	3 cut(s)	207, 293, 306
BsrI	ACTGG	1 cut(s)	689
BssECI	CCNNGG	4 cut(s)	288, 294, 392, 811
BssMI	GATC	7 cut(s)	117, 175, 183, 212, 298, 562, 778
BssNI	GRCGYC	1 cut(s)	165
BssT1I	CCWWGG	3 cut(s)	288, 294, 811
Bst2UI	CCWGG	2 cut(s)	393, 864
Bst4CI	ACNGT	7 cut(s)	94, 472, 514, 569, 671, 773, 872
Bst6I	CTCTTC	3 cut(s)	44, 79, 203
BstACI	GRCGYC	1 cut(s)	165
BstC8I	GCNNGC	4 cut(s)	13, 248, 330, 763
BstDEI	CTNAG	2 cut(s)	251, 576
BstF5I	GGATG	1 cut(s)	763
BstFNI	CGCG	2 cut(s)	194, 462
BstKTI	GATC	7 cut(s)	120, 178, 186, 215, 301, 565, 781
BstMAI	GTCTC	3 cut(s)	575, 644, 677
BstMBI	GATC	7 cut(s)	117, 175, 183, 212, 298, 562, 778
BstMWI	GCNNNNNNNGC	1 cut(s)	252
BstNI	CCWGG	2 cut(s)	393, 864
BstNSI	RCATGY	1 cut(s)	653
BstSCI	CCNGG	2 cut(s)	391, 862
BstSFI	CTRYAG	2 cut(s)	552, 871
BstUI	CGCG	2 cut(s)	194, 462
BstV1I	GCAGC	2 cut(s)	538, 793
BstV2I	GAAGAC	1 cut(s)	372
BstX2I	RGATCY	4 cut(s)	117, 212, 298, 778
BstYI	RGATCY	4 cut(s)	117, 212, 298, 778
BsuRI	GGCC	2 cut(s)	293, 497
BtgZI	GCGATG	1 cut(s)	175
BtsCI	GGATG	1 cut(s)	763
BtsI	GCAGTG	1 cut(s)	606
BtsIMutI	CAGTG	3 cut(s)	486, 606, 696
BtuMI	TCGCGA	1 cut(s)	194
Cac8I	GCNNGC	4 cut(s)	13, 248, 330, 763
Cfr13I	GGNCC	2 cut(s)	259, 264
CseI	GACGC	1 cut(s)	173
Csp6I	GTAC	2 cut(s)	145, 473
CviAII	CATG	5 cut(s)	123, 336, 650, 677, 731
CviQI	GTAC	2 cut(s)	145, 473
DdeI	CTNAG	2 cut(s)	251, 576
DpnI	GATC	7 cut(s)	119, 177, 185, 214, 300, 564, 780
DpnII	GATC	7 cut(s)	117, 175, 183, 212, 298, 562, 778
EaeI	YGGCCR	1 cut(s)	495
Eam1104I	CTCTTC	3 cut(s)	44, 79, 203
EarI	CTCTTC	3 cut(s)	44, 79, 203
EciI	GGCGGA	1 cut(s)	205
Eco130I	CCWWGG	3 cut(s)	288, 294, 811
Eco47I	GGWCC	2 cut(s)	259, 264
Eco57I	CTGAAG	3 cut(s)	227, 543, 619
EcoRII	CCWGG	2 cut(s)	391, 862
EcoT14I	CCWWGG	3 cut(s)	288, 294, 811
ErhI	CCWWGG	3 cut(s)	288, 294, 811
FaeI	CATG	5 cut(s)	126, 339, 653, 680, 734
FatI	CATG	5 cut(s)	122, 335, 649, 676, 730
FauI	CCCGC	2 cut(s)	673, 758
FbaI	TGATCA	1 cut(s)	175
Fnu4HI	GCNGC	2 cut(s)	552, 807
FokI	GGATG	1 cut(s)	770
Fsp4HI	GCNGC	2 cut(s)	552, 807
FspBI	CTAG	3 cut(s)	6, 132, 447
GluI	GCNGC	2 cut(s)	552, 807
HaeIII	GGCC	2 cut(s)	293, 497
HapII	CCGG	3 cut(s)	237, 262, 273
HgaI	GACGC	1 cut(s)	173
Hin1I	GRCGYC	1 cut(s)	165
Hin1II	CATG	5 cut(s)	126, 339, 653, 680, 734
HincII	GTYRAC	2 cut(s)	430, 736
HindII	GTYRAC	2 cut(s)	430, 736
HindIII	AAGCTT	1 cut(s)	326
HinfI	GANTC	2 cut(s)	727, 737
HpaII	CCGG	3 cut(s)	237, 262, 273
HphI	GGTGA	6 cut(s)	11, 82, 374, 518, 634, 713
Hpy166II	GTNNAC	4 cut(s)	145, 430, 455, 736
Hpy188I	TCNGA	4 cut(s)	202, 243, 577, 783
Hpy188III	TCNNGA	5 cut(s)	193, 262, 273, 659, 854
Hpy8I	GTNNAC	4 cut(s)	145, 430, 455, 736
Hpy99I	CGWCG	2 cut(s)	224, 615
HpyAV	CCTTC	7 cut(s)	26, 97, 143, 546, 635, 692, 869
HpyCH4III	ACNGT	7 cut(s)	94, 472, 514, 569, 671, 773, 872
HpyCH4V	TGCA	6 cut(s)	332, 407, 554, 584, 599, 822
HpyF10VI	GCNNNNNNNGC	1 cut(s)	252
HpyF3I	CTNAG	2 cut(s)	251, 576
Hsp92I	GRCGYC	1 cut(s)	165
Hsp92II	CATG	5 cut(s)	126, 339, 653, 680, 734
Kpn2I	TCCGGA	2 cut(s)	261, 272
Ksp22I	TGATCA	1 cut(s)	175
Kzo9I	GATC	7 cut(s)	117, 175, 183, 212, 298, 562, 778
LmnI	GCTCC	3 cut(s)	68, 202, 275
Lsp1109I	GCAGC	2 cut(s)	538, 793
LweI	GCATC	2 cut(s)	610, 748
MaeI	CTAG	3 cut(s)	6, 132, 447
MalI	GATC	7 cut(s)	119, 177, 185, 214, 300, 564, 780
MboI	GATC	7 cut(s)	117, 175, 183, 212, 298, 562, 778
MboII	GAAGA	8 cut(s)	31, 34, 37, 66, 220, 338, 377, 625
MflI	RGATCY	4 cut(s)	117, 212, 298, 778
MlsI	TGGCCA	1 cut(s)	497
MluCI	AATT	1 cut(s)	594
MluNI	TGGCCA	1 cut(s)	497
MlyI	GAGTC	1 cut(s)	731
MmeI	TCCRAC	1 cut(s)	826
Mox20I	TGGCCA	1 cut(s)	497
MroI	TCCGGA	2 cut(s)	261, 272
MscI	TGGCCA	1 cut(s)	497
MslI	CAYNNNNRTG	1 cut(s)	491
Msp20I	TGGCCA	1 cut(s)	497
MspI	CCGG	3 cut(s)	237, 262, 273
MspR9I	CCNGG	2 cut(s)	393, 864
Mva1269I	GAATGC	1 cut(s)	824
MvaI	CCWGG	2 cut(s)	393, 864
MvnI	CGCG	2 cut(s)	194, 462
MwoI	GCNNNNNNNGC	1 cut(s)	252
NdeII	GATC	7 cut(s)	117, 175, 183, 212, 298, 562, 778
NlaIII	CATG	5 cut(s)	126, 339, 653, 680, 734
NlaIV	GGNNCC	2 cut(s)	128, 300
NmeAIII	GCCGAG	1 cut(s)	193
NruI	TCGCGA	1 cut(s)	194
NspI	RCATGY	1 cut(s)	653
OliI	CACNNNNGTG	1 cut(s)	491
PctI	GAATGC	1 cut(s)	824
PfeI	GAWTC	1 cut(s)	727
PflFI	GACNNNGTC	1 cut(s)	434
PkrI	GCNGC	2 cut(s)	553, 808
PleI	GAGTC	1 cut(s)	731
PpsI	GAGTC	1 cut(s)	731
Psp6I	CCWGG	2 cut(s)	391, 862
PspGI	CCWGG	2 cut(s)	391, 862
PspN4I	GGNNCC	2 cut(s)	128, 300
PspPI	GGNCC	2 cut(s)	259, 264
PstI	CTGCAG	1 cut(s)	556
PsuI	RGATCY	4 cut(s)	117, 212, 298, 778
PsyI	GACNNNGTC	1 cut(s)	434
RruI	TCGCGA	1 cut(s)	194
RsaI	GTAC	2 cut(s)	146, 474
RsaNI	GTAC	2 cut(s)	145, 473
RseI	CAYNNNNRTG	1 cut(s)	491
SatI	GCNGC	2 cut(s)	552, 807
Sau3AI	GATC	7 cut(s)	117, 175, 183, 212, 298, 562, 778
Sau96I	GGNCC	2 cut(s)	259, 264
SchI	GAGTC	1 cut(s)	731
ScrFI	CCNGG	2 cut(s)	393, 864
SfaNI	GCATC	2 cut(s)	610, 748
SfcI	CTRYAG	2 cut(s)	552, 871
SinI	GGWCC	2 cut(s)	259, 264
SmiMI	CAYNNNNRTG	1 cut(s)	491
Sse9I	AATT	1 cut(s)	594
SsiI	CCGC	4 cut(s)	216, 460, 680, 765
SspI	AATATT	1 cut(s)	442
SspMI	CTAG	3 cut(s)	6, 132, 447
StyD4I	CCNGG	2 cut(s)	391, 862
StyI	CCWWGG	3 cut(s)	288, 294, 811
TaaI	ACNGT	7 cut(s)	94, 472, 514, 569, 671, 773, 872
TasI	AATT	1 cut(s)	594
TatI	WGTACW	1 cut(s)	472
TfiI	GAWTC	1 cut(s)	727
TscAI	CASTG	3 cut(s)	493, 606, 696
TseI	GCWGC	2 cut(s)	551, 806
TspDTI	ATGAA	3 cut(s)	271, 402, 719
TspGWI	ACGGA	2 cut(s)	90, 176
TspRI	CASTG	3 cut(s)	493, 606, 696
Tth111I	GACNNNGTC	1 cut(s)	434
VpaK11BI	GGWCC	2 cut(s)	259, 264
XceI	RCATGY	1 cut(s)	653
XspI	CTAG	3 cut(s)	6, 132, 447

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.