Basic Information

Type: gene

Biological Identity

Species

pyrus_communis

Chromosome

Chr13

Orthogroup ID

OG0008687

Physical Location & Seq

Genomic Coordinates Reverse (-)

11088231 .. 11090610

Gene Structure 2380 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

pycom13g15220.4

Sequence Viewer

CDS Protein Promoter (2k)

Length: 903 bp

ATGATGACTAGGGTTTGCCTTCAGCTTCTTCTCCTCTTCTTCTTCCTGCTCTCAATCTGCTCCACCTCCTCCTCCTCCTCTGCTTCCCGCACCTTCACCGTCAATCCGTCCAAAGTCAAACAGATCTCATGGAACCCTAGAGCTTTCGTGTACGAAGGCCTGCTGACGGACGCCGAGTGCGATCACTTGATCTCCATCGCGAAATCGGAGCTCAAGAGATCCGCCGTCGCGGATAACTTGTCCGGTCAGAGCAAGCTCAGCGAGGTGCGGACCAGCTCCGGCATGTTCATTCCCAAGGCCAAGGATCCTATTGTTGCTGGTATTGAGGACAAGCTTGCAACATGGACATTTCTTCCAAAAGAAAATGGAGAAGACATACAAGTATTGAGGTATGAGCCTGGGCAGAAATATGAACCACACTACGATTACTTTGTCGACAAGGTCAATATTGCCAGGGGTGGACACCGCATAGCAACTGTACTGATGTATCTTACTGATGTGGCCAAAGGTGGTGAAACTGTGTTCCCTGAAGCAGAGATACCTTTACGCCGTAAGGCTGCAGAAATAGATCACAGTCTTTCTGAGTGTGCAAAGAAAGGAATTGCAGTGAAACCACGACGTGGAGATGCCCTTCTTTTCTTCAGTCTCACCCCACATGCTGTTCCAGACCCGAACAGTCTCCATGCCGGTTGCCCAGTGATTGAAGGTGAGAAATGGTCAGCAACAAAGTGGATTCATGTTGACTCATTTGACAAGAACTTGGATGTCGGTGGGGACTGTGGAGATCTGAATGAGAGTTGTGAGAGATGGGCTGCCCTTGGGGAATGCACCAAGAACCAAGAGTATATGGTTGGAACTCCTGAGCTTCCTGGCTACTGTAGGAGGAGTTGTAAGGTATGTTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0004656 GO:0006082 GO:0006464 GO:0006520 GO:0006575 GO:0006807 GO:0008150 GO:0008152 GO:0009987 GO:0016491 GO:0016705 GO:0016706 GO:0018126 GO:0018193 GO:0018208 GO:0018401 GO:0019471 GO:0019511 GO:0019538 GO:0019752 GO:0019798 GO:0031543 GO:0031545 GO:0036211 GO:0043170 GO:0043412 GO:0043436 GO:0044237 GO:0044238 GO:0044260 GO:0044267 GO:0044281 GO:0051213 GO:0055114 GO:0071704 GO:0140096 GO:1901564 GO:1901605

KEGG Pathways

Metabolic & Signaling

ko00330 ko01100 map00330 map01100

Pfam Domains

Protein Families

2OG-FeII_Oxy_3 ShK

Protein Analysis

301

Amino Acids

33.23

Weight (kDa)

6.4

Isoelectric Point (pI)

51.1

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0008687)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G06300 AT5G18900
fragaria_vesca	FvH4_4g16790 FvH4_4g16790
malus_domestica	MD13G1176400.v1.1 MD16G1178200.v1.1
prunus_persica	Prupe.1G145500_v2.0.a1 Prupe.1G145500_v2.0.a1 Prupe.1G145500_v2.0.a1
pyrus_communis	pycom13g15220 pycom16g14970
rosa_chinensis	RchiOBHm_Chr4g0420361
rosa_laevigata	RLG00000007770
rosa_multiflora	Rmu_sc0002248.1_g000004 Rmu_sc0040667.1_g000002
rosa_roxburghii	Rroxscaffold_5G00363000
rosa_rugosa	Rorug04G0163500 Rorug04G0163500
rosa_samantha	Rh4AG224700 Rh4BG227700 Rh4CG239200 Rh4DG223200
rosa_wichuraiana	Rw4G019400

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB7I	CCANNNNNTGG	1 cut(s)	620
AccI	GTMKAC	1 cut(s)	435
AccII	CGCG	2 cut(s)	200, 230
AciI	CCGC	5 cut(s)	88, 222, 230, 268, 466
AclWI	GGATC	3 cut(s)	213, 299, 312
AcoI	YGGCCR	1 cut(s)	501
AcuI	CTGAAG	3 cut(s)	5, 549, 625
AcyI	GRCGYC	1 cut(s)	171
AdeI	CACNNNGTG	1 cut(s)	620
AfaI	GTAC	2 cut(s)	152, 480
AfiI	CCNNNNNNNGG	2 cut(s)	166, 620
AgsI	TTSAA	1 cut(s)	704
AjiI	CACGTC	1 cut(s)	620
AjnI	CCWGG	3 cut(s)	397, 452, 868
AluBI	AGCT	7 cut(s)	25, 143, 211, 256, 276, 334, 865
AluI	AGCT	7 cut(s)	25, 143, 211, 256, 276, 334, 865
Alw21I	GWGCWC	1 cut(s)	213
Alw26I	GTCTC	2 cut(s)	650, 683
AlwI	GGATC	3 cut(s)	213, 299, 312
AoxI	GGCC	3 cut(s)	157, 297, 501
ApeKI	GCWGC	2 cut(s)	557, 812
AspS9I	GGNCC	1 cut(s)	270
AsuHPI	GGTGA	4 cut(s)	88, 524, 640, 719
AvaII	GGWCC	1 cut(s)	270
BaeI	ACNNNNGTAYC	2 cut(s)	470, 503
BalI	TGGCCA	1 cut(s)	503
BamHI	GGATCC	1 cut(s)	304
BanII	GRGCYC	1 cut(s)	213
BarI	GAAGNNNNNNTAC	2 cut(s)	522, 554
BbsI	GAAGAC	1 cut(s)	378
Bbv12I	GWGCWC	1 cut(s)	213
BbvI	GCAGC	2 cut(s)	544, 799
BccI	CCATC	2 cut(s)	203, 801
BceAI	ACGGC	2 cut(s)	209, 534
BciT130I	CCWGG	3 cut(s)	399, 454, 870
BcoDI	GTCTC	2 cut(s)	650, 683
BfaI	CTAG	2 cut(s)	9, 138
BfmI	CTRYAG	2 cut(s)	558, 877
BglII	AGATCT	2 cut(s)	123, 784
BisI	GCNGC	2 cut(s)	558, 813
BlpI	GCTNAGC	1 cut(s)	257
BlsI	GCNGC	2 cut(s)	559, 814
Bme1390I	CCNGG	3 cut(s)	399, 454, 870
Bme18I	GGWCC	1 cut(s)	270
BmgBI	CACGTC	1 cut(s)	620
BmgT120I	GGNCC	1 cut(s)	270
BmiI	GGNNCC	2 cut(s)	134, 306
BmrFI	CCNGG	3 cut(s)	399, 454, 870
BmrI	ACTGGG	1 cut(s)	689
BmsI	GCATC	1 cut(s)	616
BmuI	ACTGGG	1 cut(s)	689
BpiI	GAAGAC	1 cut(s)	378
Bpu10I	CCTNAGC	1 cut(s)	861
Bpu1102I	GCTNAGC	1 cut(s)	257
BpuEI	CTTGAG	1 cut(s)	197
BsaBI	GATNNNNATC	1 cut(s)	194
BsaHI	GRCGYC	1 cut(s)	171
BsaJI	CCNNGG	5 cut(s)	294, 300, 398, 453, 817
BsaWI	WCCGGW	1 cut(s)	242
BsaXI	ACNNNNNCTCC	3 cut(s)	176, 206, 874
Bsc4I	CCNNNNNNNGG	2 cut(s)	166, 620
Bse118I	RCCGGY	1 cut(s)	686
Bse1I	ACTGG	1 cut(s)	695
Bse8I	GATNNNNATC	1 cut(s)	194
BseBI	CCWGG	3 cut(s)	399, 454, 870
BseDI	CCNNGG	5 cut(s)	294, 300, 398, 453, 817
BseGI	GGATG	1 cut(s)	769
BseJI	GATNNNNATC	1 cut(s)	194
BseLI	CCNNNNNNNGG	2 cut(s)	166, 620
BseMII	CTCAG	3 cut(s)	271, 573, 852
BseNI	ACTGG	1 cut(s)	695
BseRI	GAGGAG	6 cut(s)	23, 58, 61, 64, 67, 898
BseXI	GCAGC	2 cut(s)	544, 799
Bsh1236I	CGCG	2 cut(s)	200, 230
BshFI	GGCC	3 cut(s)	159, 299, 503
BsiHKAI	GWGCWC	1 cut(s)	213
BsiSI	CCGG	3 cut(s)	243, 279, 687
BslFI	GGGAC	1 cut(s)	788
BslI	CCNNNNNNNGG	2 cut(s)	166, 620
BsmAI	GTCTC	2 cut(s)	650, 683
BsmFI	GGGAC	1 cut(s)	788
BsmI	GAATGC	1 cut(s)	830
BsnI	GGCC	3 cut(s)	159, 299, 503
Bsp1286I	GDGCHC	1 cut(s)	213
Bsp143I	GATC	7 cut(s)	123, 181, 189, 218, 304, 568, 784
Bsp1720I	GCTNAGC	1 cut(s)	257
Bsp68I	TCGCGA	1 cut(s)	200
BspACI	CCGC	5 cut(s)	88, 222, 230, 268, 466
BspANI	GGCC	3 cut(s)	159, 299, 503
BspCNI	CTCAG	3 cut(s)	270, 574, 853
BspFNI	CGCG	2 cut(s)	200, 230
BspLI	GGNNCC	2 cut(s)	134, 306
BspMAI	CTGCAG	1 cut(s)	562
BspPI	GGATC	3 cut(s)	213, 299, 312
BsrFI	RCCGGY	1 cut(s)	686
BsrI	ACTGG	1 cut(s)	695
BssAI	RCCGGY	1 cut(s)	686
BssECI	CCNNGG	5 cut(s)	294, 300, 398, 453, 817
BssMI	GATC	7 cut(s)	123, 181, 189, 218, 304, 568, 784
BssNI	GRCGYC	1 cut(s)	171
BssT1I	CCWWGG	3 cut(s)	294, 300, 817
Bst2UI	CCWGG	3 cut(s)	399, 454, 870
Bst4CI	ACNGT	7 cut(s)	100, 478, 520, 575, 677, 779, 878
Bst6I	CTCTTC	1 cut(s)	41
BstACI	GRCGYC	1 cut(s)	171
BstC8I	GCNNGC	3 cut(s)	161, 254, 336
BstDEI	CTNAG	3 cut(s)	257, 582, 861
BstF5I	GGATG	1 cut(s)	769
BstFNI	CGCG	2 cut(s)	200, 230
BstKTI	GATC	7 cut(s)	126, 184, 192, 221, 307, 571, 787
BstMAI	GTCTC	2 cut(s)	650, 683
BstMBI	GATC	7 cut(s)	123, 181, 189, 218, 304, 568, 784
BstMWI	GCNNNNNNNGC	1 cut(s)	258
BstNI	CCWGG	3 cut(s)	399, 454, 870
BstNSI	RCATGY	2 cut(s)	286, 659
BstSCI	CCNGG	3 cut(s)	397, 452, 868
BstSFI	CTRYAG	2 cut(s)	558, 877
BstUI	CGCG	2 cut(s)	200, 230
BstV1I	GCAGC	2 cut(s)	544, 799
BstV2I	GAAGAC	1 cut(s)	378
BstX2I	RGATCY	4 cut(s)	123, 218, 304, 784
BstYI	RGATCY	4 cut(s)	123, 218, 304, 784
BsuRI	GGCC	3 cut(s)	159, 299, 503
BtgZI	GCGATG	1 cut(s)	181
BtrI	CACGTC	1 cut(s)	620
BtsCI	GGATG	1 cut(s)	769
BtsI	GCAGTG	1 cut(s)	612
BtsIMutI	CAGTG	2 cut(s)	612, 702
BtuMI	TCGCGA	1 cut(s)	200
Cac8I	GCNNGC	3 cut(s)	161, 254, 336
Cfr10I	RCCGGY	1 cut(s)	686
Cfr13I	GGNCC	1 cut(s)	270
CseI	GACGC	1 cut(s)	179
Csp6I	GTAC	2 cut(s)	151, 479
CviAII	CATG	6 cut(s)	129, 283, 342, 656, 683, 737
CviQI	GTAC	2 cut(s)	151, 479
DdeI	CTNAG	3 cut(s)	257, 582, 861
DpnI	GATC	7 cut(s)	125, 183, 191, 220, 306, 570, 786
DpnII	GATC	7 cut(s)	123, 181, 189, 218, 304, 568, 784
DraIII	CACNNNGTG	1 cut(s)	620
EaeI	YGGCCR	1 cut(s)	501
Eam1104I	CTCTTC	1 cut(s)	41
EarI	CTCTTC	1 cut(s)	41
EciI	GGCGGA	1 cut(s)	211
Ecl136II	GAGCTC	1 cut(s)	211
Eco130I	CCWWGG	3 cut(s)	294, 300, 817
Eco147I	AGGCCT	1 cut(s)	159
Eco24I	GRGCYC	1 cut(s)	213
Eco47I	GGWCC	1 cut(s)	270
Eco53kI	GAGCTC	1 cut(s)	211
Eco57I	CTGAAG	3 cut(s)	5, 549, 625
EcoICRI	GAGCTC	1 cut(s)	211
EcoRII	CCWGG	3 cut(s)	397, 452, 868
EcoT14I	CCWWGG	3 cut(s)	294, 300, 817
EcoT38I	GRGCYC	1 cut(s)	213
ErhI	CCWWGG	3 cut(s)	294, 300, 817
FaeI	CATG	6 cut(s)	132, 286, 345, 659, 686, 740
FaqI	GGGAC	1 cut(s)	788
FatI	CATG	6 cut(s)	128, 282, 341, 655, 682, 736
FauI	CCCGC	1 cut(s)	95
FblI	GTMKAC	1 cut(s)	435
Fnu4HI	GCNGC	2 cut(s)	558, 813
FokI	GGATG	1 cut(s)	776
FriOI	GRGCYC	1 cut(s)	213
Fsp4HI	GCNGC	2 cut(s)	558, 813
FspBI	CTAG	2 cut(s)	9, 138
GluI	GCNGC	2 cut(s)	558, 813
HaeIII	GGCC	3 cut(s)	159, 299, 503
HapII	CCGG	3 cut(s)	243, 279, 687
HgaI	GACGC	1 cut(s)	179
Hin1I	GRCGYC	1 cut(s)	171
Hin1II	CATG	6 cut(s)	132, 286, 345, 659, 686, 740
HincII	GTYRAC	2 cut(s)	436, 742
HindII	GTYRAC	2 cut(s)	436, 742
HindIII	AAGCTT	1 cut(s)	332
HinfI	GANTC	2 cut(s)	733, 743
HpaII	CCGG	3 cut(s)	243, 279, 687
HphI	GGTGA	4 cut(s)	88, 524, 640, 719
Hpy166II	GTNNAC	4 cut(s)	151, 436, 461, 742
Hpy188I	TCNGA	4 cut(s)	208, 249, 583, 789
Hpy188III	TCNNGA	4 cut(s)	199, 214, 665, 860
Hpy8I	GTNNAC	4 cut(s)	151, 436, 461, 742
Hpy99I	CGWCG	2 cut(s)	230, 621
HpyAV	CCTTC	5 cut(s)	29, 103, 149, 641, 698
HpyCH4III	ACNGT	7 cut(s)	100, 478, 520, 575, 677, 779, 878
HpyCH4IV	ACGT	1 cut(s)	619
HpyCH4V	TGCA	5 cut(s)	338, 560, 590, 605, 828
HpyF10VI	GCNNNNNNNGC	1 cut(s)	258
HpyF3I	CTNAG	3 cut(s)	257, 582, 861
HpySE526I	ACGT	1 cut(s)	619
Hsp92I	GRCGYC	1 cut(s)	171
Hsp92II	CATG	6 cut(s)	132, 286, 345, 659, 686, 740
Kzo9I	GATC	7 cut(s)	123, 181, 189, 218, 304, 568, 784
LmnI	GCTCC	3 cut(s)	65, 208, 281
Lsp1109I	GCAGC	2 cut(s)	544, 799
LweI	GCATC	1 cut(s)	616
MaeI	CTAG	2 cut(s)	9, 138
MaeII	ACGT	1 cut(s)	619
MalI	GATC	7 cut(s)	125, 183, 191, 220, 306, 570, 786
MboI	GATC	7 cut(s)	123, 181, 189, 218, 304, 568, 784
MboII	GAAGA	7 cut(s)	20, 28, 31, 34, 344, 383, 631
MflI	RGATCY	4 cut(s)	123, 218, 304, 784
MhlI	GDGCHC	1 cut(s)	213
MlsI	TGGCCA	1 cut(s)	503
MluCI	AATT	1 cut(s)	600
MluNI	TGGCCA	1 cut(s)	503
MlyI	GAGTC	1 cut(s)	737
MmeI	TCCRAC	1 cut(s)	832
Mox20I	TGGCCA	1 cut(s)	503
MscI	TGGCCA	1 cut(s)	503
Msp20I	TGGCCA	1 cut(s)	503
MspI	CCGG	3 cut(s)	243, 279, 687
MspR9I	CCNGG	3 cut(s)	399, 454, 870
Mva1269I	GAATGC	1 cut(s)	830
MvaI	CCWGG	3 cut(s)	399, 454, 870
MvnI	CGCG	2 cut(s)	200, 230
MwoI	GCNNNNNNNGC	1 cut(s)	258
NdeII	GATC	7 cut(s)	123, 181, 189, 218, 304, 568, 784
NlaIII	CATG	6 cut(s)	132, 286, 345, 659, 686, 740
NlaIV	GGNNCC	2 cut(s)	134, 306
NmeAIII	GCCGAG	1 cut(s)	199
NruI	TCGCGA	1 cut(s)	200
NspI	RCATGY	2 cut(s)	286, 659
PceI	AGGCCT	1 cut(s)	159
PcsI	WCGNNNNNNNCGW	1 cut(s)	177
PctI	GAATGC	1 cut(s)	830
PfeI	GAWTC	1 cut(s)	733
PflFI	GACNNNGTC	1 cut(s)	440
PflMI	CCANNNNNTGG	1 cut(s)	620
PkrI	GCNGC	2 cut(s)	559, 814
PleI	GAGTC	1 cut(s)	737
PpsI	GAGTC	1 cut(s)	737
Psp124BI	GAGCTC	1 cut(s)	213
Psp6I	CCWGG	3 cut(s)	397, 452, 868
PspGI	CCWGG	3 cut(s)	397, 452, 868
PspN4I	GGNNCC	2 cut(s)	134, 306
PspPI	GGNCC	1 cut(s)	270
PstI	CTGCAG	1 cut(s)	562
PsuI	RGATCY	4 cut(s)	123, 218, 304, 784
PsyI	GACNNNGTC	1 cut(s)	440
RruI	TCGCGA	1 cut(s)	200
RsaI	GTAC	2 cut(s)	152, 480
RsaNI	GTAC	2 cut(s)	151, 479
SacI	GAGCTC	1 cut(s)	213
SalI	GTCGAC	1 cut(s)	434
SatI	GCNGC	2 cut(s)	558, 813
Sau3AI	GATC	7 cut(s)	123, 181, 189, 218, 304, 568, 784
Sau96I	GGNCC	1 cut(s)	270
SchI	GAGTC	1 cut(s)	737
ScrFI	CCNGG	3 cut(s)	399, 454, 870
SduI	GDGCHC	1 cut(s)	213
SfaNI	GCATC	1 cut(s)	616
SfcI	CTRYAG	2 cut(s)	558, 877
SinI	GGWCC	1 cut(s)	270
SmlI	CTYRAG	1 cut(s)	212
SmoI	CTYRAG	1 cut(s)	212
Sse9I	AATT	1 cut(s)	600
SseBI	AGGCCT	1 cut(s)	159
SsiI	CCGC	5 cut(s)	88, 222, 230, 268, 466
SspI	AATATT	1 cut(s)	448
SspMI	CTAG	2 cut(s)	9, 138
SstI	GAGCTC	1 cut(s)	213
StuI	AGGCCT	1 cut(s)	159
StyD4I	CCNGG	3 cut(s)	397, 452, 868
StyI	CCWWGG	3 cut(s)	294, 300, 817
TaaI	ACNGT	7 cut(s)	100, 478, 520, 575, 677, 779, 878
TaiI	ACGT	1 cut(s)	622
TaqI	TCGA	1 cut(s)	435
TasI	AATT	1 cut(s)	600
TatI	WGTACW	1 cut(s)	478
TfiI	GAWTC	1 cut(s)	733
TscAI	CASTG	2 cut(s)	612, 702
TseI	GCWGC	2 cut(s)	557, 812
TspDTI	ATGAA	3 cut(s)	277, 426, 725
TspGWI	ACGGA	2 cut(s)	96, 182
TspRI	CASTG	2 cut(s)	612, 702
Tth111I	GACNNNGTC	1 cut(s)	440
Van91I	CCANNNNNTGG	1 cut(s)	620
VpaK11BI	GGWCC	1 cut(s)	270
XceI	RCATGY	2 cut(s)	286, 659
XmiI	GTMKAC	1 cut(s)	435
XspI	CTAG	2 cut(s)	9, 138

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.