Basic Information

Type: gene

Biological Identity

Species

malus_domestica

Chromosome

Chr13

Orthogroup ID

OG0008687

Physical Location & Seq

Genomic Coordinates Reverse (-)

14609909 .. 14612800

Gene Structure 2892 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

MD13G1176400.v1.1.491

Sequence Viewer

CDS Protein Promoter (2k)

Length: 906 bp

ATGACTAGGGTTTGCCTTCACCTCCTCCTCCTCCTCTTCTTCTTCATGCTCTCAATCTGCTCCACCTCCTCCTCCTTCTCCTCTGCTTCCCGCACCTTCACCGTCAATCCGTCCAAAGTCAAACAGATCTCATGGAACCCTAGAGCTTTCGTGTACGAAGGCTTGCTGACGGACGCCGAGTGCGATCACTTGATCTCCATCGCGAAATCGGAGCTCAAGAGATCCGCCGTCGCCGATAACTTGTCCGGTCAGAGCAAGCTCAGCAAGGTGCGGACCAGCTCCGGCATGTTCATTCCCAAGGCCAAGGATCCTATTGTTGCTGGTATTGAGGACAAGCTTTCAACATGGACATTTCTTCCAAAAGAAAATGGAGAAGACATACAAGTATTGAGGTATGAGCCTGGGCAGAAATATGAACCACACTACGATTACTTTGTCGACAAGGTCAATATTGCCAGGGGTGGACACCGCATAGCAACTGTACTGATGTATCTTACTGATGTGGCCAAAGGTGGTGAAACTGTGTTCCCTGAAGCAGAGATACCTTTACGCCGTAAGGCTGCAGAAATAGATCACAGTCTCTCTGAGTGTGCAAAGAAAGGAATTGCAGTGAAACCACAACGTGGAGATGCCCTTCTTTTCTTCAGTCTCACCCCACAGGCTGTTCCAGACCCGAACAGTCTCCATGCCGGTTGCCCAGTGATTGAAGGTGAGAAATGGTCAGCAACAAAGTGGATTCATGTTGACTCATTTGACAAGAACTTGGATGCCAGTGGGGACTGTGGAGATCTGAATGAGAGTTGTGAGAGATGGGCTGCCCTTGGGGAATGCACCAAGAACCAAGAGTATATGGTTGGAACTCCTGAGCTTCCTGGCTACTGTAGGAGGAGTTGTAAGGTATGTTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0004656 GO:0006082 GO:0006464 GO:0006520 GO:0006575 GO:0006807 GO:0008150 GO:0008152 GO:0009987 GO:0016491 GO:0016705 GO:0016706 GO:0018126 GO:0018193 GO:0018208 GO:0018401 GO:0019471 GO:0019511 GO:0019538 GO:0019752 GO:0019798 GO:0031543 GO:0031545 GO:0036211 GO:0043170 GO:0043412 GO:0043436 GO:0044237 GO:0044238 GO:0044260 GO:0044267 GO:0044281 GO:0051213 GO:0055114 GO:0071704 GO:0140096 GO:1901564 GO:1901605

KEGG Pathways

Metabolic & Signaling

ko00330 ko01100 map00330 map01100

Pfam Domains

Protein Families

2OG-FeII_Oxy_3 ShK

Protein Analysis

302

Amino Acids

33.36

Weight (kDa)

6.66

Isoelectric Point (pI)

47.91

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
2OG-FeII_Oxy	PF03171	125 - 247	3.3e-09	2OG-Fe(II) oxygenase superfamily
2OG-FeII_Oxy_3	PF13640	127 - 247	1.1e-18	2OG-Fe(II) oxygenase superfamily

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0008687)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G06300 AT5G18900
fragaria_vesca	FvH4_4g16790 FvH4_4g16790
malus_domestica	MD13G1176400.v1.1 MD16G1178200.v1.1
prunus_persica	Prupe.1G145500_v2.0.a1 Prupe.1G145500_v2.0.a1 Prupe.1G145500_v2.0.a1
pyrus_communis	pycom13g15220 pycom16g14970
rosa_chinensis	RchiOBHm_Chr4g0420361
rosa_laevigata	RLG00000007770
rosa_multiflora	Rmu_sc0002248.1_g000004 Rmu_sc0040667.1_g000002
rosa_roxburghii	Rroxscaffold_5G00363000
rosa_rugosa	Rorug04G0163500 Rorug04G0163500
rosa_samantha	Rh4AG224700 Rh4BG227700 Rh4CG239200 Rh4DG223200
rosa_wichuraiana	Rw4G019400

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB7I	CCANNNNNTGG	1 cut(s)	623
AccI	GTMKAC	1 cut(s)	438
AccII	CGCG	1 cut(s)	203
AciI	CCGC	4 cut(s)	91, 225, 271, 469
AclWI	GGATC	3 cut(s)	216, 302, 315
AcoI	YGGCCR	1 cut(s)	504
AcuI	CTGAAG	2 cut(s)	552, 628
AcyI	GRCGYC	1 cut(s)	174
AdeI	CACNNNGTG	1 cut(s)	623
AfaI	GTAC	2 cut(s)	155, 483
AfiI	CCNNNNNNNGG	1 cut(s)	623
AgsI	TTSAA	2 cut(s)	342, 707
AjnI	CCWGG	3 cut(s)	400, 455, 871
AluBI	AGCT	6 cut(s)	146, 214, 259, 279, 337, 868
AluI	AGCT	6 cut(s)	146, 214, 259, 279, 337, 868
Alw21I	GWGCWC	1 cut(s)	216
Alw26I	GTCTC	3 cut(s)	584, 653, 686
AlwI	GGATC	3 cut(s)	216, 302, 315
AoxI	GGCC	2 cut(s)	300, 504
ApeKI	GCWGC	2 cut(s)	560, 815
AspS9I	GGNCC	1 cut(s)	273
AsuHPI	GGTGA	5 cut(s)	11, 91, 527, 643, 722
AvaII	GGWCC	1 cut(s)	273
BaeI	ACNNNNGTAYC	2 cut(s)	473, 506
BalI	TGGCCA	1 cut(s)	506
BamHI	GGATCC	1 cut(s)	307
BanII	GRGCYC	1 cut(s)	216
BarI	GAAGNNNNNNTAC	2 cut(s)	525, 557
BbsI	GAAGAC	1 cut(s)	381
Bbv12I	GWGCWC	1 cut(s)	216
BbvI	GCAGC	2 cut(s)	547, 802
BccI	CCATC	2 cut(s)	206, 804
BceAI	ACGGC	2 cut(s)	212, 537
BciT130I	CCWGG	3 cut(s)	402, 457, 873
BcoDI	GTCTC	3 cut(s)	584, 653, 686
BfaI	CTAG	2 cut(s)	6, 141
BfmI	CTRYAG	2 cut(s)	561, 880
BglII	AGATCT	2 cut(s)	126, 787
BisI	GCNGC	2 cut(s)	561, 816
BlpI	GCTNAGC	1 cut(s)	260
BlsI	GCNGC	2 cut(s)	562, 817
Bme1390I	CCNGG	3 cut(s)	402, 457, 873
Bme18I	GGWCC	1 cut(s)	273
BmgT120I	GGNCC	1 cut(s)	273
BmiI	GGNNCC	2 cut(s)	137, 309
BmrFI	CCNGG	3 cut(s)	402, 457, 873
BmrI	ACTGGG	1 cut(s)	692
BmsI	GCATC	2 cut(s)	619, 757
BmuI	ACTGGG	1 cut(s)	692
BpiI	GAAGAC	1 cut(s)	381
Bpu10I	CCTNAGC	1 cut(s)	864
Bpu1102I	GCTNAGC	1 cut(s)	260
BpuEI	CTTGAG	1 cut(s)	200
BsaBI	GATNNNNATC	1 cut(s)	197
BsaHI	GRCGYC	1 cut(s)	174
BsaJI	CCNNGG	5 cut(s)	297, 303, 401, 456, 820
BsaWI	WCCGGW	1 cut(s)	245
BsaXI	ACNNNNNCTCC	3 cut(s)	179, 209, 877
Bsc4I	CCNNNNNNNGG	1 cut(s)	623
Bse118I	RCCGGY	1 cut(s)	689
Bse1I	ACTGG	2 cut(s)	698, 771
Bse8I	GATNNNNATC	1 cut(s)	197
BseBI	CCWGG	3 cut(s)	402, 457, 873
BseDI	CCNNGG	5 cut(s)	297, 303, 401, 456, 820
BseGI	GGATG	1 cut(s)	772
BseJI	GATNNNNATC	1 cut(s)	197
BseLI	CCNNNNNNNGG	1 cut(s)	623
BseMII	CTCAG	3 cut(s)	274, 576, 855
BseNI	ACTGG	2 cut(s)	698, 771
BseRI	GAGGAG	8 cut(s)	14, 17, 20, 23, 58, 61, 70, 901
BseXI	GCAGC	2 cut(s)	547, 802
Bsh1236I	CGCG	1 cut(s)	203
BshFI	GGCC	2 cut(s)	302, 506
BsiHKAI	GWGCWC	1 cut(s)	216
BsiSI	CCGG	3 cut(s)	246, 282, 690
BslFI	GGGAC	1 cut(s)	791
BslI	CCNNNNNNNGG	1 cut(s)	623
BsmAI	GTCTC	3 cut(s)	584, 653, 686
BsmFI	GGGAC	1 cut(s)	791
BsmI	GAATGC	1 cut(s)	833
BsnI	GGCC	2 cut(s)	302, 506
Bsp1286I	GDGCHC	1 cut(s)	216
Bsp143I	GATC	7 cut(s)	126, 184, 192, 221, 307, 571, 787
Bsp1720I	GCTNAGC	1 cut(s)	260
Bsp68I	TCGCGA	1 cut(s)	203
BspACI	CCGC	4 cut(s)	91, 225, 271, 469
BspANI	GGCC	2 cut(s)	302, 506
BspCNI	CTCAG	3 cut(s)	273, 577, 856
BspFNI	CGCG	1 cut(s)	203
BspLI	GGNNCC	2 cut(s)	137, 309
BspMAI	CTGCAG	1 cut(s)	565
BspPI	GGATC	3 cut(s)	216, 302, 315
BsrFI	RCCGGY	1 cut(s)	689
BsrI	ACTGG	2 cut(s)	698, 771
BssAI	RCCGGY	1 cut(s)	689
BssECI	CCNNGG	5 cut(s)	297, 303, 401, 456, 820
BssMI	GATC	7 cut(s)	126, 184, 192, 221, 307, 571, 787
BssNI	GRCGYC	1 cut(s)	174
BssT1I	CCWWGG	3 cut(s)	297, 303, 820
Bst2UI	CCWGG	3 cut(s)	402, 457, 873
Bst4CI	ACNGT	7 cut(s)	103, 481, 523, 578, 680, 782, 881
Bst6I	CTCTTC	1 cut(s)	41
BstACI	GRCGYC	1 cut(s)	174
BstC8I	GCNNGC	2 cut(s)	164, 257
BstDEI	CTNAG	3 cut(s)	260, 585, 864
BstF5I	GGATG	1 cut(s)	772
BstFNI	CGCG	1 cut(s)	203
BstKTI	GATC	7 cut(s)	129, 187, 195, 224, 310, 574, 790
BstMAI	GTCTC	3 cut(s)	584, 653, 686
BstMBI	GATC	7 cut(s)	126, 184, 192, 221, 307, 571, 787
BstMWI	GCNNNNNNNGC	1 cut(s)	261
BstNI	CCWGG	3 cut(s)	402, 457, 873
BstNSI	RCATGY	1 cut(s)	289
BstSCI	CCNGG	3 cut(s)	400, 455, 871
BstSFI	CTRYAG	2 cut(s)	561, 880
BstUI	CGCG	1 cut(s)	203
BstV1I	GCAGC	2 cut(s)	547, 802
BstV2I	GAAGAC	1 cut(s)	381
BstX2I	RGATCY	4 cut(s)	126, 221, 307, 787
BstYI	RGATCY	4 cut(s)	126, 221, 307, 787
BsuRI	GGCC	2 cut(s)	302, 506
BtgZI	GCGATG	1 cut(s)	184
BtsCI	GGATG	1 cut(s)	772
BtsI	GCAGTG	1 cut(s)	615
BtsIMutI	CAGTG	3 cut(s)	615, 705, 778
BtuMI	TCGCGA	1 cut(s)	203
Cac8I	GCNNGC	2 cut(s)	164, 257
Cfr10I	RCCGGY	1 cut(s)	689
Cfr13I	GGNCC	1 cut(s)	273
CseI	GACGC	1 cut(s)	182
Csp6I	GTAC	2 cut(s)	154, 482
CviAII	CATG	6 cut(s)	46, 132, 286, 345, 686, 740
CviQI	GTAC	2 cut(s)	154, 482
DdeI	CTNAG	3 cut(s)	260, 585, 864
DpnI	GATC	7 cut(s)	128, 186, 194, 223, 309, 573, 789
DpnII	GATC	7 cut(s)	126, 184, 192, 221, 307, 571, 787
DraIII	CACNNNGTG	1 cut(s)	623
EaeI	YGGCCR	1 cut(s)	504
Eam1104I	CTCTTC	1 cut(s)	41
EarI	CTCTTC	1 cut(s)	41
EciI	GGCGGA	1 cut(s)	214
Ecl136II	GAGCTC	1 cut(s)	214
Eco130I	CCWWGG	3 cut(s)	297, 303, 820
Eco24I	GRGCYC	1 cut(s)	216
Eco47I	GGWCC	1 cut(s)	273
Eco53kI	GAGCTC	1 cut(s)	214
Eco57I	CTGAAG	2 cut(s)	552, 628
EcoICRI	GAGCTC	1 cut(s)	214
EcoRII	CCWGG	3 cut(s)	400, 455, 871
EcoT14I	CCWWGG	3 cut(s)	297, 303, 820
EcoT38I	GRGCYC	1 cut(s)	216
ErhI	CCWWGG	3 cut(s)	297, 303, 820
FaeI	CATG	6 cut(s)	49, 135, 289, 348, 689, 743
FaqI	GGGAC	1 cut(s)	791
FatI	CATG	6 cut(s)	45, 131, 285, 344, 685, 739
FauI	CCCGC	1 cut(s)	98
FblI	GTMKAC	1 cut(s)	438
Fnu4HI	GCNGC	2 cut(s)	561, 816
FokI	GGATG	1 cut(s)	779
FriOI	GRGCYC	1 cut(s)	216
Fsp4HI	GCNGC	2 cut(s)	561, 816
FspBI	CTAG	2 cut(s)	6, 141
GluI	GCNGC	2 cut(s)	561, 816
HaeIII	GGCC	2 cut(s)	302, 506
HapII	CCGG	3 cut(s)	246, 282, 690
HgaI	GACGC	1 cut(s)	182
Hin1I	GRCGYC	1 cut(s)	174
Hin1II	CATG	6 cut(s)	49, 135, 289, 348, 689, 743
HincII	GTYRAC	2 cut(s)	439, 745
HindII	GTYRAC	2 cut(s)	439, 745
HindIII	AAGCTT	1 cut(s)	335
HinfI	GANTC	2 cut(s)	736, 746
HpaII	CCGG	3 cut(s)	246, 282, 690
HphI	GGTGA	5 cut(s)	11, 91, 527, 643, 722
Hpy166II	GTNNAC	4 cut(s)	154, 439, 464, 745
Hpy188I	TCNGA	4 cut(s)	211, 252, 586, 792
Hpy188III	TCNNGA	4 cut(s)	202, 217, 668, 863
Hpy8I	GTNNAC	4 cut(s)	154, 439, 464, 745
Hpy99I	CGWCG	1 cut(s)	233
HpyAV	CCTTC	6 cut(s)	26, 85, 106, 152, 644, 701
HpyCH4III	ACNGT	7 cut(s)	103, 481, 523, 578, 680, 782, 881
HpyCH4IV	ACGT	1 cut(s)	622
HpyCH4V	TGCA	4 cut(s)	563, 593, 608, 831
HpyF10VI	GCNNNNNNNGC	1 cut(s)	261
HpyF3I	CTNAG	3 cut(s)	260, 585, 864
HpySE526I	ACGT	1 cut(s)	622
Hsp92I	GRCGYC	1 cut(s)	174
Hsp92II	CATG	6 cut(s)	49, 135, 289, 348, 689, 743
Kzo9I	GATC	7 cut(s)	126, 184, 192, 221, 307, 571, 787
LmnI	GCTCC	3 cut(s)	65, 211, 284
Lsp1109I	GCAGC	2 cut(s)	547, 802
LweI	GCATC	2 cut(s)	619, 757
MaeI	CTAG	2 cut(s)	6, 141
MaeII	ACGT	1 cut(s)	622
MalI	GATC	7 cut(s)	128, 186, 194, 223, 309, 573, 789
MboI	GATC	7 cut(s)	126, 184, 192, 221, 307, 571, 787
MboII	GAAGA	6 cut(s)	28, 31, 34, 347, 386, 634
MflI	RGATCY	4 cut(s)	126, 221, 307, 787
MhlI	GDGCHC	1 cut(s)	216
MlsI	TGGCCA	1 cut(s)	506
MluCI	AATT	1 cut(s)	603
MluNI	TGGCCA	1 cut(s)	506
MlyI	GAGTC	1 cut(s)	740
MmeI	TCCRAC	1 cut(s)	835
Mox20I	TGGCCA	1 cut(s)	506
MscI	TGGCCA	1 cut(s)	506
Msp20I	TGGCCA	1 cut(s)	506
MspI	CCGG	3 cut(s)	246, 282, 690
MspR9I	CCNGG	3 cut(s)	402, 457, 873
Mva1269I	GAATGC	1 cut(s)	833
MvaI	CCWGG	3 cut(s)	402, 457, 873
MvnI	CGCG	1 cut(s)	203
MwoI	GCNNNNNNNGC	1 cut(s)	261
NdeII	GATC	7 cut(s)	126, 184, 192, 221, 307, 571, 787
NlaIII	CATG	6 cut(s)	49, 135, 289, 348, 689, 743
NlaIV	GGNNCC	2 cut(s)	137, 309
NmeAIII	GCCGAG	1 cut(s)	202
NruI	TCGCGA	1 cut(s)	203
NspI	RCATGY	1 cut(s)	289
PcsI	WCGNNNNNNNCGW	1 cut(s)	180
PctI	GAATGC	1 cut(s)	833
PfeI	GAWTC	1 cut(s)	736
PflFI	GACNNNGTC	1 cut(s)	443
PflMI	CCANNNNNTGG	1 cut(s)	623
PkrI	GCNGC	2 cut(s)	562, 817
PleI	GAGTC	1 cut(s)	740
PpsI	GAGTC	1 cut(s)	740
Psp124BI	GAGCTC	1 cut(s)	216
Psp6I	CCWGG	3 cut(s)	400, 455, 871
PspGI	CCWGG	3 cut(s)	400, 455, 871
PspN4I	GGNNCC	2 cut(s)	137, 309
PspPI	GGNCC	1 cut(s)	273
PstI	CTGCAG	1 cut(s)	565
PsuI	RGATCY	4 cut(s)	126, 221, 307, 787
PsyI	GACNNNGTC	1 cut(s)	443
RruI	TCGCGA	1 cut(s)	203
RsaI	GTAC	2 cut(s)	155, 483
RsaNI	GTAC	2 cut(s)	154, 482
SacI	GAGCTC	1 cut(s)	216
SalI	GTCGAC	1 cut(s)	437
SatI	GCNGC	2 cut(s)	561, 816
Sau3AI	GATC	7 cut(s)	126, 184, 192, 221, 307, 571, 787
Sau96I	GGNCC	1 cut(s)	273
SchI	GAGTC	1 cut(s)	740
ScrFI	CCNGG	3 cut(s)	402, 457, 873
SduI	GDGCHC	1 cut(s)	216
SfaNI	GCATC	2 cut(s)	619, 757
SfcI	CTRYAG	2 cut(s)	561, 880
SinI	GGWCC	1 cut(s)	273
SmlI	CTYRAG	1 cut(s)	215
SmoI	CTYRAG	1 cut(s)	215
Sse9I	AATT	1 cut(s)	603
SsiI	CCGC	4 cut(s)	91, 225, 271, 469
SspI	AATATT	1 cut(s)	451
SspMI	CTAG	2 cut(s)	6, 141
SstI	GAGCTC	1 cut(s)	216
StyD4I	CCNGG	3 cut(s)	400, 455, 871
StyI	CCWWGG	3 cut(s)	297, 303, 820
TaaI	ACNGT	7 cut(s)	103, 481, 523, 578, 680, 782, 881
TaiI	ACGT	1 cut(s)	625
TaqI	TCGA	1 cut(s)	438
TasI	AATT	1 cut(s)	603
TatI	WGTACW	1 cut(s)	481
TfiI	GAWTC	1 cut(s)	736
TscAI	CASTG	3 cut(s)	615, 705, 778
TseI	GCWGC	2 cut(s)	560, 815
TspDTI	ATGAA	4 cut(s)	34, 280, 429, 728
TspGWI	ACGGA	2 cut(s)	99, 185
TspRI	CASTG	3 cut(s)	615, 705, 778
Tth111I	GACNNNGTC	1 cut(s)	443
Van91I	CCANNNNNTGG	1 cut(s)	623
VpaK11BI	GGWCC	1 cut(s)	273
XceI	RCATGY	1 cut(s)	289
XmiI	GTMKAC	1 cut(s)	438
XspI	CTAG	2 cut(s)	6, 141

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.