Basic Information

Type: gene

Biological Identity

Species

fragaria_vesca

Chromosome

Fvb4

Orthogroup ID

OG0008687

Physical Location & Seq

Genomic Coordinates Forward (+)

20652994 .. 20656606

Gene Structure 3613 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

FvH4_4g16790.t2

Sequence Viewer

CDS Protein Promoter (2k)

Length: 807 bp

ATGATGAAGACCAGGGCTTCGCCTCACCTCTGCTTCCTCTCCCTCCTTCTCTCACTCACTTCCGCCTCCGCCACCTTCACCGTCAACCCCTCCAAAGTCAAGCAGATCTCATGGAACCCCAGAGCTTTCGTGTACGAAGGTCTACTCTCCGAGCTGGAATGCGACCACTTGATTTCCATTGCGAAATCGGAGCTGAAGAGATCGGCCGTCGCCGATAACTTGTCCGGCCAGAGCAAGCTCAGTGAGGTCCGCACCAGCTCCGGCATGTTCATCCCCAAGGCCAAGGATCATATTGTTGCCGGTATAGAGGACAAGCTTGCAACATGGACATTTCTCCCAAAAGAGAATGGAGAAGACATACAAGTATTAAGATATGAGCCTGGGCAGAAATATGAACCACACTATGATTACTTTGCTGATAAGGTCAATATTGCGCGGGGTGGACATCGTATAGCAACTGTACTTATGTATCTTACTGATGTGGCCAAAGGTGGTGAAACAGTGTTTCCTCTAGCAGAGGAAGTTCACCGCCGTAAGGCTTCAGTACCAGATGCTAGTCTCTCTGACTGTGCAAAGAAAGGAATTGCAGTGAAACCACGTAGAGGAGATGCCCTTCTTTTCTTCAGTCTCCACCCAAACGCTATTCCAGACGAAAACAGTCTCCATGCAGGGTGCCCAGTGATTGAAGATCTAAATGAGAGTTGTGAGAGATGGGCTGCCCTTGGGGAATGCACCAAGAACCGAGAGTATATGGTTGGATCTGCTGACCTTCCTGGCTACTGTAGGAGGAGTTGTAAGGTGTGTTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0004656 GO:0006082 GO:0006464 GO:0006520 GO:0006575 GO:0006807 GO:0008150 GO:0008152 GO:0009987 GO:0016491 GO:0016705 GO:0016706 GO:0018126 GO:0018193 GO:0018208 GO:0018401 GO:0019471 GO:0019511 GO:0019538 GO:0019752 GO:0019798 GO:0031543 GO:0031545 GO:0036211 GO:0043170 GO:0043412 GO:0043436 GO:0044237 GO:0044238 GO:0044260 GO:0044267 GO:0044281 GO:0051213 GO:0055114 GO:0071704 GO:0140096 GO:1901564 GO:1901605

KEGG Pathways

Metabolic & Signaling

ko00330 ko01100 map00330 map01100

Pfam Domains

Protein Families

2OG-FeII_Oxy_3 ShK

Protein Analysis

269

Amino Acids

29.62

Weight (kDa)

7.57

Isoelectric Point (pI)

49.5

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
2OG-FeII_Oxy	PF03171	118 - 240	1.4e-08	2OG-Fe(II) oxygenase superfamily
2OG-FeII_Oxy_3	PF13640	120 - 240	5.7e-19	2OG-Fe(II) oxygenase superfamily

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0008687)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G06300 AT5G18900
fragaria_vesca	FvH4_4g16790 FvH4_4g16790
malus_domestica	MD13G1176400.v1.1 MD16G1178200.v1.1
prunus_persica	Prupe.1G145500_v2.0.a1 Prupe.1G145500_v2.0.a1 Prupe.1G145500_v2.0.a1
pyrus_communis	pycom13g15220 pycom16g14970
rosa_chinensis	RchiOBHm_Chr4g0420361
rosa_laevigata	RLG00000007770
rosa_multiflora	Rmu_sc0002248.1_g000004 Rmu_sc0040667.1_g000002
rosa_roxburghii	Rroxscaffold_5G00363000
rosa_rugosa	Rorug04G0163500 Rorug04G0163500
rosa_samantha	Rh4AG224700 Rh4BG227700 Rh4CG239200 Rh4DG223200
rosa_wichuraiana	Rw4G019400

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB1I	GGYRCC	1 cut(s)	672
AccI	GTMKAC	1 cut(s)	142
AccII	CGCG	1 cut(s)	436
AciI	CCGC	5 cut(s)	63, 69, 250, 436, 529
AclWI	GGATC	2 cut(s)	294, 766
AcoI	YGGCCR	3 cut(s)	204, 226, 483
AcuI	CTGAAG	3 cut(s)	215, 525, 607
AfaI	GTAC	3 cut(s)	134, 462, 546
AfiI	CCNNNNNNNGG	2 cut(s)	535, 602
AgsI	TTSAA	1 cut(s)	686
AjnI	CCWGG	3 cut(s)	11, 379, 772
AluBI	AGCT	6 cut(s)	125, 154, 193, 238, 258, 316
AluI	AGCT	6 cut(s)	125, 154, 193, 238, 258, 316
Alw26I	GTCTC	3 cut(s)	563, 632, 665
AlwI	GGATC	2 cut(s)	294, 766
AoxI	GGCC	4 cut(s)	204, 226, 279, 483
ApeKI	GCWGC	1 cut(s)	716
ArsI	GACNNNNNNTTYG	1 cut(s)	33
AspLEI	GCGC	1 cut(s)	436
AspS9I	GGNCC	1 cut(s)	247
AsuHPI	GGTGA	4 cut(s)	17, 70, 506, 518
AvaII	GGWCC	1 cut(s)	247
BaeGI	GKGCMC	1 cut(s)	677
BaeI	ACNNNNGTAYC	2 cut(s)	452, 485
BalI	TGGCCA	1 cut(s)	485
BanI	GGYRCC	1 cut(s)	672
BbsI	GAAGAC	2 cut(s)	14, 360
BbvI	GCAGC	1 cut(s)	703
BccI	CCATC	1 cut(s)	705
BceAI	ACGGC	2 cut(s)	191, 516
BciT130I	CCWGG	3 cut(s)	13, 381, 774
BcoDI	GTCTC	3 cut(s)	563, 632, 665
BfaI	CTAG	2 cut(s)	512, 555
BfmI	CTRYAG	1 cut(s)	781
BglII	AGATCT	2 cut(s)	105, 688
BisI	GCNGC	1 cut(s)	717
BlsI	GCNGC	1 cut(s)	718
Bme1390I	CCNGG	3 cut(s)	13, 381, 774
Bme18I	GGWCC	1 cut(s)	247
BmgT120I	GGNCC	1 cut(s)	247
BmiI	GGNNCC	2 cut(s)	116, 674
BmrFI	CCNGG	3 cut(s)	13, 381, 774
BmrI	ACTGGG	1 cut(s)	671
BmsI	GCATC	2 cut(s)	541, 598
BmuI	ACTGGG	1 cut(s)	671
BpiI	GAAGAC	2 cut(s)	14, 360
BsaAI	YACGTR	1 cut(s)	599
BsaJI	CCNNGG	5 cut(s)	12, 276, 282, 380, 721
BsaXI	ACNNNNNCTCC	1 cut(s)	778
Bsc4I	CCNNNNNNNGG	2 cut(s)	535, 602
Bse118I	RCCGGY	1 cut(s)	299
Bse1I	ACTGG	1 cut(s)	677
Bse3DI	GCAATG	1 cut(s)	177
BseBI	CCWGG	3 cut(s)	13, 381, 774
BseDI	CCNNGG	5 cut(s)	12, 276, 282, 380, 721
BseGI	GGATG	1 cut(s)	270
BseLI	CCNNNNNNNGG	2 cut(s)	535, 602
BseMI	GCAATG	1 cut(s)	177
BseMII	CTCAG	1 cut(s)	253
BseNI	ACTGG	1 cut(s)	677
BseRI	GAGGAG	2 cut(s)	618, 802
BseSI	GKGCMC	1 cut(s)	677
BseX3I	CGGCCG	1 cut(s)	204
BseXI	GCAGC	1 cut(s)	703
Bsh1236I	CGCG	1 cut(s)	436
Bsh1285I	CGRYCG	1 cut(s)	207
BshFI	GGCC	4 cut(s)	206, 228, 281, 485
BshNI	GGYRCC	1 cut(s)	672
BsiEI	CGRYCG	1 cut(s)	207
BsiSI	CCGG	3 cut(s)	225, 261, 300
BslI	CCNNNNNNNGG	2 cut(s)	535, 602
BsmAI	GTCTC	3 cut(s)	563, 632, 665
BsmI	GAATGC	2 cut(s)	164, 734
BsnI	GGCC	4 cut(s)	206, 228, 281, 485
Bsp1286I	GDGCHC	1 cut(s)	677
Bsp143I	GATC	5 cut(s)	105, 200, 286, 688, 758
BspACI	CCGC	5 cut(s)	63, 69, 250, 436, 529
BspANI	GGCC	4 cut(s)	206, 228, 281, 485
BspCNI	CTCAG	1 cut(s)	252
BspFNI	CGCG	1 cut(s)	436
BspLI	GGNNCC	2 cut(s)	116, 674
BspPI	GGATC	2 cut(s)	294, 766
BspT107I	GGYRCC	1 cut(s)	672
BsrDI	GCAATG	1 cut(s)	177
BsrFI	RCCGGY	1 cut(s)	299
BsrI	ACTGG	1 cut(s)	677
BssAI	RCCGGY	1 cut(s)	299
BssECI	CCNNGG	5 cut(s)	12, 276, 282, 380, 721
BssMI	GATC	5 cut(s)	105, 200, 286, 688, 758
BssT1I	CCWWGG	3 cut(s)	276, 282, 721
Bst2UI	CCWGG	3 cut(s)	13, 381, 774
Bst4CI	ACNGT	6 cut(s)	82, 460, 502, 569, 659, 782
Bst6I	CTCTTC	1 cut(s)	191
BstBAI	YACGTR	1 cut(s)	599
BstC8I	GCNNGC	2 cut(s)	236, 318
BstDEI	CTNAG	1 cut(s)	239
BstF5I	GGATG	1 cut(s)	270
BstFNI	CGCG	1 cut(s)	436
BstHHI	GCGC	1 cut(s)	436
BstKTI	GATC	5 cut(s)	108, 203, 289, 691, 761
BstMAI	GTCTC	3 cut(s)	563, 632, 665
BstMBI	GATC	5 cut(s)	105, 200, 286, 688, 758
BstMCI	CGRYCG	1 cut(s)	207
BstNI	CCWGG	3 cut(s)	13, 381, 774
BstNSI	RCATGY	1 cut(s)	268
BstSCI	CCNGG	3 cut(s)	11, 379, 772
BstSFI	CTRYAG	1 cut(s)	781
BstSLI	GKGCMC	1 cut(s)	677
BstUI	CGCG	1 cut(s)	436
BstV1I	GCAGC	1 cut(s)	703
BstV2I	GAAGAC	2 cut(s)	14, 360
BstX2I	RGATCY	3 cut(s)	105, 688, 758
BstYI	RGATCY	3 cut(s)	105, 688, 758
BstZI	CGGCCG	1 cut(s)	204
BsuRI	GGCC	4 cut(s)	206, 228, 281, 485
BtsCI	GGATG	1 cut(s)	270
BtsI	GCAGTG	1 cut(s)	594
BtsIMutI	CAGTG	4 cut(s)	247, 507, 594, 684
Cac8I	GCNNGC	2 cut(s)	236, 318
CfoI	GCGC	1 cut(s)	436
Cfr10I	RCCGGY	1 cut(s)	299
Cfr13I	GGNCC	1 cut(s)	247
Csp6I	GTAC	3 cut(s)	133, 461, 545
CviAII	CATG	4 cut(s)	111, 265, 324, 665
CviQI	GTAC	3 cut(s)	133, 461, 545
DdeI	CTNAG	1 cut(s)	239
DpnI	GATC	5 cut(s)	107, 202, 288, 690, 760
DpnII	GATC	5 cut(s)	105, 200, 286, 688, 758
EaeI	YGGCCR	3 cut(s)	204, 226, 483
EagI	CGGCCG	1 cut(s)	204
Eam1104I	CTCTTC	1 cut(s)	191
EarI	CTCTTC	1 cut(s)	191
EciI	GGCGGA	2 cut(s)	52, 58
EclXI	CGGCCG	1 cut(s)	204
Eco130I	CCWWGG	3 cut(s)	276, 282, 721
Eco47I	GGWCC	1 cut(s)	247
Eco52I	CGGCCG	1 cut(s)	204
Eco57I	CTGAAG	3 cut(s)	215, 525, 607
EcoRII	CCWGG	3 cut(s)	11, 379, 772
EcoT14I	CCWWGG	3 cut(s)	276, 282, 721
ErhI	CCWWGG	3 cut(s)	276, 282, 721
FaeI	CATG	4 cut(s)	114, 268, 327, 668
FatI	CATG	4 cut(s)	110, 264, 323, 664
FauI	CCCGC	1 cut(s)	429
FblI	GTMKAC	1 cut(s)	142
Fnu4HI	GCNGC	1 cut(s)	717
FokI	GGATG	1 cut(s)	257
Fsp4HI	GCNGC	1 cut(s)	717
FspBI	CTAG	2 cut(s)	512, 555
GlaI	GCGC	1 cut(s)	435
GluI	GCNGC	1 cut(s)	717
HaeIII	GGCC	4 cut(s)	206, 228, 281, 485
HapII	CCGG	3 cut(s)	225, 261, 300
HhaI	GCGC	1 cut(s)	436
Hin1II	CATG	4 cut(s)	114, 268, 327, 668
Hin6I	GCGC	1 cut(s)	434
HinP1I	GCGC	1 cut(s)	434
HincII	GTYRAC	1 cut(s)	85
HindII	GTYRAC	1 cut(s)	85
HindIII	AAGCTT	1 cut(s)	314
HpaII	CCGG	3 cut(s)	225, 261, 300
HphI	GGTGA	4 cut(s)	17, 70, 506, 518
Hpy166II	GTNNAC	5 cut(s)	85, 133, 143, 443, 526
Hpy188I	TCNGA	3 cut(s)	151, 190, 565
Hpy188III	TCNNGA	1 cut(s)	647
Hpy8I	GTNNAC	5 cut(s)	85, 133, 143, 443, 526
Hpy99I	CGWCG	1 cut(s)	212
HpyAV	CCTTC	5 cut(s)	56, 85, 131, 623, 779
HpyCH4III	ACNGT	6 cut(s)	82, 460, 502, 569, 659, 782
HpyCH4IV	ACGT	1 cut(s)	598
HpyCH4V	TGCA	5 cut(s)	320, 572, 587, 668, 732
HpyF3I	CTNAG	1 cut(s)	239
HpySE526I	ACGT	1 cut(s)	598
Hsp92II	CATG	4 cut(s)	114, 268, 327, 668
HspAI	GCGC	1 cut(s)	434
Kzo9I	GATC	5 cut(s)	105, 200, 286, 688, 758
LmnI	GCTCC	2 cut(s)	190, 263
Lsp1109I	GCAGC	1 cut(s)	703
LweI	GCATC	2 cut(s)	541, 598
MaeI	CTAG	2 cut(s)	512, 555
MaeII	ACGT	1 cut(s)	598
MalI	GATC	5 cut(s)	107, 202, 288, 690, 760
MboI	GATC	5 cut(s)	105, 200, 286, 688, 758
MboII	GAAGA	5 cut(s)	19, 208, 365, 613, 698
MflI	RGATCY	3 cut(s)	105, 688, 758
MhlI	GDGCHC	1 cut(s)	677
MlsI	TGGCCA	1 cut(s)	485
MluCI	AATT	1 cut(s)	582
MluNI	TGGCCA	1 cut(s)	485
MmeI	TCCRAC	1 cut(s)	736
Mox20I	TGGCCA	1 cut(s)	485
MscI	TGGCCA	1 cut(s)	485
MseI	TTAA	1 cut(s)	368
Msp20I	TGGCCA	1 cut(s)	485
MspI	CCGG	3 cut(s)	225, 261, 300
MspR9I	CCNGG	3 cut(s)	13, 381, 774
Mva1269I	GAATGC	2 cut(s)	164, 734
MvaI	CCWGG	3 cut(s)	13, 381, 774
MvnI	CGCG	1 cut(s)	436
NdeII	GATC	5 cut(s)	105, 200, 286, 688, 758
NlaIII	CATG	4 cut(s)	114, 268, 327, 668
NlaIV	GGNNCC	2 cut(s)	116, 674
NspI	RCATGY	1 cut(s)	268
PctI	GAATGC	2 cut(s)	164, 734
PkrI	GCNGC	1 cut(s)	718
Ppu21I	YACGTR	1 cut(s)	599
Psp6I	CCWGG	3 cut(s)	11, 379, 772
PspGI	CCWGG	3 cut(s)	11, 379, 772
PspN4I	GGNNCC	2 cut(s)	116, 674
PspPI	GGNCC	1 cut(s)	247
PsuI	RGATCY	3 cut(s)	105, 688, 758
RsaI	GTAC	3 cut(s)	134, 462, 546
RsaNI	GTAC	3 cut(s)	133, 461, 545
SaqAI	TTAA	1 cut(s)	368
SatI	GCNGC	1 cut(s)	717
Sau3AI	GATC	5 cut(s)	105, 200, 286, 688, 758
Sau96I	GGNCC	1 cut(s)	247
ScrFI	CCNGG	3 cut(s)	13, 381, 774
SduI	GDGCHC	1 cut(s)	677
SfaNI	GCATC	2 cut(s)	541, 598
SfcI	CTRYAG	1 cut(s)	781
SinI	GGWCC	1 cut(s)	247
Sse9I	AATT	1 cut(s)	582
SsiI	CCGC	5 cut(s)	63, 69, 250, 436, 529
SspI	AATATT	1 cut(s)	430
SspMI	CTAG	2 cut(s)	512, 555
StyD4I	CCNGG	3 cut(s)	11, 379, 772
StyI	CCWWGG	3 cut(s)	276, 282, 721
TaaI	ACNGT	6 cut(s)	82, 460, 502, 569, 659, 782
TaiI	ACGT	1 cut(s)	601
TasI	AATT	1 cut(s)	582
TatI	WGTACW	1 cut(s)	460
Tru1I	TTAA	1 cut(s)	368
Tru9I	TTAA	1 cut(s)	368
TscAI	CASTG	4 cut(s)	247, 507, 594, 684
TseI	GCWGC	1 cut(s)	716
TspDTI	ATGAA	3 cut(s)	20, 259, 408
TspRI	CASTG	4 cut(s)	247, 507, 594, 684
VpaK11BI	GGWCC	1 cut(s)	247
XceI	RCATGY	1 cut(s)	268
XmiI	GTMKAC	1 cut(s)	142
XspI	CTAG	2 cut(s)	512, 555

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.