Basic Information

Type: gene

Biological Identity

Species

rosa_laevigata

Chromosome

Chr2

Orthogroup ID

OG0008687

Physical Location & Seq

Genomic Coordinates Reverse (-)

20858949 .. 20861923

Gene Structure 2975 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

RLM00000007770

Sequence Viewer

CDS Protein Promoter (2k)

Length: 897 bp

ATGAAGAAGACTAGGGTTCCTTCGCCTCAGCTCAGCTTCCTCTTCTTCCTTCTCTCAATCACCAACCCCACCACCACCTTTGCCACCTTCACCGTCAACCCCTCCAAAGTGAAGCAGATCTCATGGAACCCCAGAGCTTTCGTGTACGAAGGTTTGCTCACCGACTTGGAATGCGATCACTTGATCTCCATTGCGAAATCGGAGCTGAAGAGATCGGCCGTCGCCGATAACTTGTCCGGTCAGAGCAAGCTCAGCGAGGTACGCACCAGCTCCGGCATGTTCATCCCCAAGGCCAAGGATCATATTGTTGCTGGTATAGAGGACAAGCTTGCAACATGGACATTTCTCCCAAAAGAGAATGGAGAAGACATACAAGTATTGAGATATGAGCCTGGGCAGAAATATGAACCACACTATGATTACTTTGCTGACAAGGTCAATATTGCGCGGGGTGGACATCGTATAGCAACTGTACTTATGTATCTTACTGATGTGGCCAAAGGTGGTGAAACAGTGTTTCCTCTAGCAGAGGAAATTCACCGCCGTAAGGCTTCAGAACCAGATGCGAGTCTCTCTGACTGTGCAAAGAAAGGAATTGCAGTGAAACCACGTAGAGGAGATGCCCTTCTTTTCTTCAGTCTCCACCCAAACGCAGTTCCAGACGAAAACAGTCTCCATGCGGGGTGCCCAGTGATTGAAGGTGAGAAATGGTCCGCAACAAAGTGGATTCATGTTGACTCATTTGACAAGATCTTGGATACCGGTGGGAACTGCACAGATCTAAATGAGAGTTGTGACAGATGGGCTGCCCTTGGGGAATGCACCAAGAACCGAGAGTATATGGTTGGATCTGCTGACCTTCCTGGCTACTGTAGGAGGAGTTGTAAGGTGTGTTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0004656 GO:0006082 GO:0006464 GO:0006520 GO:0006575 GO:0006807 GO:0008150 GO:0008152 GO:0009987 GO:0016491 GO:0016705 GO:0016706 GO:0018126 GO:0018193 GO:0018208 GO:0018401 GO:0019471 GO:0019511 GO:0019538 GO:0019752 GO:0019798 GO:0031543 GO:0031545 GO:0036211 GO:0043170 GO:0043412 GO:0043436 GO:0044237 GO:0044238 GO:0044260 GO:0044267 GO:0044281 GO:0051213 GO:0055114 GO:0071704 GO:0140096 GO:1901564 GO:1901605

KEGG Pathways

Metabolic & Signaling

ko00330 ko01100 map00330 map01100

Pfam Domains

Protein Families

2OG-FeII_Oxy_3 ShK

Protein Analysis

299

Amino Acids

33.13

Weight (kDa)

7.06

Isoelectric Point (pI)

50.05

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
2OG-FeII_Oxy	PF03171	122 - 244	1.5e-08	2OG-Fe(II) oxygenase superfamily
2OG-FeII_Oxy_3	PF13640	124 - 244	6.1e-19	2OG-Fe(II) oxygenase superfamily

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0008687)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G06300 AT5G18900
fragaria_vesca	FvH4_4g16790 FvH4_4g16790
malus_domestica	MD13G1176400.v1.1 MD16G1178200.v1.1
prunus_persica	Prupe.1G145500_v2.0.a1 Prupe.1G145500_v2.0.a1 Prupe.1G145500_v2.0.a1
pyrus_communis	pycom13g15220 pycom16g14970
rosa_chinensis	RchiOBHm_Chr4g0420361
rosa_laevigata	RLG00000007770
rosa_multiflora	Rmu_sc0002248.1_g000004 Rmu_sc0040667.1_g000002
rosa_roxburghii	Rroxscaffold_5G00363000
rosa_rugosa	Rorug04G0163500 Rorug04G0163500
rosa_samantha	Rh4AG224700 Rh4BG227700 Rh4CG239200 Rh4DG223200
rosa_wichuraiana	Rw4G019400

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB1I	GGYRCC	1 cut(s)	684
AccII	CGCG	1 cut(s)	448
AciI	CCGC	4 cut(s)	448, 541, 680, 714
AclWI	GGATC	2 cut(s)	306, 856
AcoI	YGGCCR	2 cut(s)	216, 495
AcsI	RAATTY	1 cut(s)	534
AcuI	CTGAAG	3 cut(s)	227, 537, 619
AfaI	GTAC	3 cut(s)	146, 261, 474
AfiI	CCNNNNNNNGG	2 cut(s)	547, 614
AgeI	ACCGGT	1 cut(s)	761
AgsI	TTSAA	1 cut(s)	698
AjnI	CCWGG	2 cut(s)	391, 862
AluBI	AGCT	7 cut(s)	31, 36, 137, 205, 250, 270, 328
AluI	AGCT	7 cut(s)	31, 36, 137, 205, 250, 270, 328
Alw26I	GTCTC	3 cut(s)	575, 644, 677
AlwI	GGATC	2 cut(s)	306, 856
AoxI	GGCC	3 cut(s)	216, 291, 495
ApeKI	GCWGC	1 cut(s)	806
ApoI	RAATTY	1 cut(s)	534
AsiGI	ACCGGT	1 cut(s)	761
AspLEI	GCGC	1 cut(s)	448
AspS9I	GGNCC	1 cut(s)	711
AsuHPI	GGTGA	6 cut(s)	52, 82, 151, 518, 530, 713
AvaII	GGWCC	1 cut(s)	711
BaeGI	GKGCMC	1 cut(s)	689
BaeI	ACNNNNGTAYC	2 cut(s)	464, 497
BalI	TGGCCA	1 cut(s)	497
BanI	GGYRCC	1 cut(s)	684
BbsI	GAAGAC	2 cut(s)	14, 372
BbvCI	CCTCAGC	1 cut(s)	27
BbvI	GCAGC	1 cut(s)	793
BccI	CCATC	1 cut(s)	795
BceAI	ACGGC	2 cut(s)	203, 528
BciT130I	CCWGG	2 cut(s)	393, 864
BciVI	GTATCC	1 cut(s)	751
BcoDI	GTCTC	3 cut(s)	575, 644, 677
BfaI	CTAG	2 cut(s)	12, 524
BfmI	CTRYAG	1 cut(s)	871
BfuI	GTATCC	1 cut(s)	751
BglII	AGATCT	3 cut(s)	117, 750, 778
BisI	GCNGC	1 cut(s)	807
BlpI	GCTNAGC	2 cut(s)	32, 251
BlsI	GCNGC	1 cut(s)	808
Bme1390I	CCNGG	2 cut(s)	393, 864
Bme18I	GGWCC	1 cut(s)	711
BmgT120I	GGNCC	1 cut(s)	711
BmiI	GGNNCC	3 cut(s)	18, 128, 686
BmrFI	CCNGG	2 cut(s)	393, 864
BmrI	ACTGGG	1 cut(s)	683
BmsI	GCATC	2 cut(s)	553, 610
BmuI	ACTGGG	1 cut(s)	683
BpiI	GAAGAC	2 cut(s)	14, 372
Bpu10I	CCTNAGC	1 cut(s)	27
Bpu1102I	GCTNAGC	2 cut(s)	32, 251
BsaAI	YACGTR	1 cut(s)	611
BsaJI	CCNNGG	4 cut(s)	288, 294, 392, 811
BsaWI	WCCGGW	2 cut(s)	236, 761
BsaXI	ACNNNNNCTCC	3 cut(s)	170, 200, 868
Bsc4I	CCNNNNNNNGG	2 cut(s)	547, 614
Bse118I	RCCGGY	1 cut(s)	761
Bse1I	ACTGG	1 cut(s)	689
Bse3DI	GCAATG	1 cut(s)	189
BseBI	CCWGG	2 cut(s)	393, 864
BseDI	CCNNGG	4 cut(s)	288, 294, 392, 811
BseGI	GGATG	1 cut(s)	282
BseLI	CCNNNNNNNGG	2 cut(s)	547, 614
BseMI	GCAATG	1 cut(s)	189
BseMII	CTCAG	3 cut(s)	41, 46, 265
BseNI	ACTGG	1 cut(s)	689
BseRI	GAGGAG	2 cut(s)	630, 892
BseSI	GKGCMC	1 cut(s)	689
BseX3I	CGGCCG	1 cut(s)	216
BseXI	GCAGC	1 cut(s)	793
BsgI	GTGCAG	1 cut(s)	757
Bsh1236I	CGCG	1 cut(s)	448
Bsh1285I	CGRYCG	1 cut(s)	219
BshFI	GGCC	3 cut(s)	218, 293, 497
BshNI	GGYRCC	1 cut(s)	684
BshTI	ACCGGT	1 cut(s)	761
BsiEI	CGRYCG	1 cut(s)	219
BsiSI	CCGG	3 cut(s)	237, 273, 762
BslI	CCNNNNNNNGG	2 cut(s)	547, 614
BsmAI	GTCTC	3 cut(s)	575, 644, 677
BsmI	GAATGC	2 cut(s)	176, 824
BsnI	GGCC	3 cut(s)	218, 293, 497
Bsp1286I	GDGCHC	1 cut(s)	689
Bsp143I	GATC	8 cut(s)	117, 175, 183, 212, 298, 750, 778, 848
Bsp1720I	GCTNAGC	2 cut(s)	32, 251
BspACI	CCGC	4 cut(s)	448, 541, 680, 714
BspANI	GGCC	3 cut(s)	218, 293, 497
BspCNI	CTCAG	3 cut(s)	40, 45, 264
BspFNI	CGCG	1 cut(s)	448
BspLI	GGNNCC	3 cut(s)	18, 128, 686
BspPI	GGATC	2 cut(s)	306, 856
BspT107I	GGYRCC	1 cut(s)	684
BsrDI	GCAATG	1 cut(s)	189
BsrFI	RCCGGY	1 cut(s)	761
BsrI	ACTGG	1 cut(s)	689
BssAI	RCCGGY	1 cut(s)	761
BssECI	CCNNGG	4 cut(s)	288, 294, 392, 811
BssMI	GATC	8 cut(s)	117, 175, 183, 212, 298, 750, 778, 848
BssT1I	CCWWGG	3 cut(s)	288, 294, 811
Bst2UI	CCWGG	2 cut(s)	393, 864
Bst4CI	ACNGT	6 cut(s)	94, 472, 514, 581, 671, 872
Bst6I	CTCTTC	2 cut(s)	47, 203
BstBAI	YACGTR	1 cut(s)	611
BstC8I	GCNNGC	2 cut(s)	248, 330
BstDEI	CTNAG	3 cut(s)	27, 32, 251
BstF5I	GGATG	1 cut(s)	282
BstFNI	CGCG	1 cut(s)	448
BstHHI	GCGC	1 cut(s)	448
BstKTI	GATC	8 cut(s)	120, 178, 186, 215, 301, 753, 781, 851
BstMAI	GTCTC	3 cut(s)	575, 644, 677
BstMBI	GATC	8 cut(s)	117, 175, 183, 212, 298, 750, 778, 848
BstMCI	CGRYCG	1 cut(s)	219
BstMWI	GCNNNNNNNGC	2 cut(s)	252, 261
BstNI	CCWGG	2 cut(s)	393, 864
BstNSI	RCATGY	1 cut(s)	280
BstSCI	CCNGG	2 cut(s)	391, 862
BstSFI	CTRYAG	1 cut(s)	871
BstSLI	GKGCMC	1 cut(s)	689
BstUI	CGCG	1 cut(s)	448
BstV1I	GCAGC	1 cut(s)	793
BstV2I	GAAGAC	2 cut(s)	14, 372
BstX2I	RGATCY	4 cut(s)	117, 750, 778, 848
BstYI	RGATCY	4 cut(s)	117, 750, 778, 848
BstZI	CGGCCG	1 cut(s)	216
BsuI	GTATCC	1 cut(s)	751
BsuRI	GGCC	3 cut(s)	218, 293, 497
BtsCI	GGATG	1 cut(s)	282
BtsI	GCAGTG	1 cut(s)	606
BtsIMutI	CAGTG	3 cut(s)	519, 606, 696
Cac8I	GCNNGC	2 cut(s)	248, 330
CfoI	GCGC	1 cut(s)	448
Cfr10I	RCCGGY	1 cut(s)	761
Cfr13I	GGNCC	1 cut(s)	711
Csp6I	GTAC	3 cut(s)	145, 260, 473
CspAI	ACCGGT	1 cut(s)	761
CspCI	CAANNNNNGTGG	2 cut(s)	61, 96
CviAII	CATG	5 cut(s)	123, 277, 336, 677, 731
CviQI	GTAC	3 cut(s)	145, 260, 473
DdeI	CTNAG	3 cut(s)	27, 32, 251
DpnI	GATC	8 cut(s)	119, 177, 185, 214, 300, 752, 780, 850
DpnII	GATC	8 cut(s)	117, 175, 183, 212, 298, 750, 778, 848
EaeI	YGGCCR	2 cut(s)	216, 495
EagI	CGGCCG	1 cut(s)	216
Eam1104I	CTCTTC	2 cut(s)	47, 203
EarI	CTCTTC	2 cut(s)	47, 203
EclXI	CGGCCG	1 cut(s)	216
Eco130I	CCWWGG	3 cut(s)	288, 294, 811
Eco47I	GGWCC	1 cut(s)	711
Eco52I	CGGCCG	1 cut(s)	216
Eco57I	CTGAAG	3 cut(s)	227, 537, 619
EcoRII	CCWGG	2 cut(s)	391, 862
EcoT14I	CCWWGG	3 cut(s)	288, 294, 811
ErhI	CCWWGG	3 cut(s)	288, 294, 811
FaeI	CATG	5 cut(s)	126, 280, 339, 680, 734
FatI	CATG	5 cut(s)	122, 276, 335, 676, 730
FauI	CCCGC	2 cut(s)	441, 673
Fnu4HI	GCNGC	1 cut(s)	807
FokI	GGATG	1 cut(s)	269
Fsp4HI	GCNGC	1 cut(s)	807
FspBI	CTAG	2 cut(s)	12, 524
GlaI	GCGC	1 cut(s)	447
GluI	GCNGC	1 cut(s)	807
HaeIII	GGCC	3 cut(s)	218, 293, 497
HapII	CCGG	3 cut(s)	237, 273, 762
HhaI	GCGC	1 cut(s)	448
Hin1II	CATG	5 cut(s)	126, 280, 339, 680, 734
Hin6I	GCGC	1 cut(s)	446
HinP1I	GCGC	1 cut(s)	446
HincII	GTYRAC	2 cut(s)	97, 736
HindII	GTYRAC	2 cut(s)	97, 736
HindIII	AAGCTT	1 cut(s)	326
HinfI	GANTC	3 cut(s)	568, 727, 737
HpaII	CCGG	3 cut(s)	237, 273, 762
HphI	GGTGA	6 cut(s)	52, 82, 151, 518, 530, 713
Hpy166II	GTNNAC	4 cut(s)	97, 145, 455, 736
Hpy188I	TCNGA	4 cut(s)	202, 243, 556, 577
Hpy188III	TCNNGA	1 cut(s)	659
Hpy8I	GTNNAC	4 cut(s)	97, 145, 455, 736
Hpy99I	CGWCG	1 cut(s)	224
HpyAV	CCTTC	7 cut(s)	30, 59, 97, 143, 635, 692, 869
HpyCH4III	ACNGT	6 cut(s)	94, 472, 514, 581, 671, 872
HpyCH4IV	ACGT	1 cut(s)	610
HpyCH4V	TGCA	5 cut(s)	332, 584, 599, 774, 822
HpyF10VI	GCNNNNNNNGC	2 cut(s)	252, 261
HpyF3I	CTNAG	3 cut(s)	27, 32, 251
HpySE526I	ACGT	1 cut(s)	610
Hsp92II	CATG	5 cut(s)	126, 280, 339, 680, 734
HspAI	GCGC	1 cut(s)	446
Kzo9I	GATC	8 cut(s)	117, 175, 183, 212, 298, 750, 778, 848
LmnI	GCTCC	2 cut(s)	202, 275
Lsp1109I	GCAGC	1 cut(s)	793
LweI	GCATC	2 cut(s)	553, 610
MaeI	CTAG	2 cut(s)	12, 524
MaeII	ACGT	1 cut(s)	610
MaeIII	GTNAC	1 cut(s)	794
MalI	GATC	8 cut(s)	119, 177, 185, 214, 300, 752, 780, 850
MboI	GATC	8 cut(s)	117, 175, 183, 212, 298, 750, 778, 848
MboII	GAAGA	7 cut(s)	16, 19, 34, 37, 220, 377, 625
MflI	RGATCY	4 cut(s)	117, 750, 778, 848
MhlI	GDGCHC	1 cut(s)	689
MlsI	TGGCCA	1 cut(s)	497
MluCI	AATT	2 cut(s)	534, 594
MluNI	TGGCCA	1 cut(s)	497
MlyI	GAGTC	2 cut(s)	577, 731
MmeI	TCCRAC	1 cut(s)	826
MnlI	CCTC	9 cut(s)	36, 50, 112, 250, 313, 523, 531, 608, 870
Mox20I	TGGCCA	1 cut(s)	497
MscI	TGGCCA	1 cut(s)	497
Msp20I	TGGCCA	1 cut(s)	497
MspI	CCGG	3 cut(s)	237, 273, 762
MspR9I	CCNGG	2 cut(s)	393, 864
Mva1269I	GAATGC	2 cut(s)	176, 824
MvaI	CCWGG	2 cut(s)	393, 864
MvnI	CGCG	1 cut(s)	448
MwoI	GCNNNNNNNGC	2 cut(s)	252, 261
NdeII	GATC	8 cut(s)	117, 175, 183, 212, 298, 750, 778, 848
NlaIII	CATG	5 cut(s)	126, 280, 339, 680, 734
NlaIV	GGNNCC	3 cut(s)	18, 128, 686
NmuCI	GTSAC	1 cut(s)	794
NspI	RCATGY	1 cut(s)	280
PctI	GAATGC	2 cut(s)	176, 824
PfeI	GAWTC	1 cut(s)	727
PflFI	GACNNNGTC	1 cut(s)	434
PinAI	ACCGGT	1 cut(s)	761
PkrI	GCNGC	1 cut(s)	808
PleI	GAGTC	2 cut(s)	576, 731
PpsI	GAGTC	2 cut(s)	576, 731
Ppu21I	YACGTR	1 cut(s)	611
Psp6I	CCWGG	2 cut(s)	391, 862
PspGI	CCWGG	2 cut(s)	391, 862
PspN4I	GGNNCC	3 cut(s)	18, 128, 686
PspPI	GGNCC	1 cut(s)	711
PsuI	RGATCY	4 cut(s)	117, 750, 778, 848
PsyI	GACNNNGTC	1 cut(s)	434
RsaI	GTAC	3 cut(s)	146, 261, 474
RsaNI	GTAC	3 cut(s)	145, 260, 473
SatI	GCNGC	1 cut(s)	807
Sau3AI	GATC	8 cut(s)	117, 175, 183, 212, 298, 750, 778, 848
Sau96I	GGNCC	1 cut(s)	711
SchI	GAGTC	2 cut(s)	577, 731
ScrFI	CCNGG	2 cut(s)	393, 864
SduI	GDGCHC	1 cut(s)	689
SfaNI	GCATC	2 cut(s)	553, 610
SfcI	CTRYAG	1 cut(s)	871
SinI	GGWCC	1 cut(s)	711
Sse9I	AATT	2 cut(s)	534, 594
SsiI	CCGC	4 cut(s)	448, 541, 680, 714
SspI	AATATT	1 cut(s)	442
SspMI	CTAG	2 cut(s)	12, 524
StyD4I	CCNGG	2 cut(s)	391, 862
StyI	CCWWGG	3 cut(s)	288, 294, 811
TaaI	ACNGT	6 cut(s)	94, 472, 514, 581, 671, 872
TaiI	ACGT	1 cut(s)	613
TasI	AATT	2 cut(s)	534, 594
TatI	WGTACW	1 cut(s)	472
TfiI	GAWTC	1 cut(s)	727
TscAI	CASTG	3 cut(s)	519, 606, 696
TseFI	GTSAC	1 cut(s)	794
TseI	GCWGC	1 cut(s)	806
Tsp45I	GTSAC	1 cut(s)	794
TspDTI	ATGAA	4 cut(s)	17, 271, 420, 719
TspRI	CASTG	3 cut(s)	519, 606, 696
Tth111I	GACNNNGTC	1 cut(s)	434
VpaK11BI	GGWCC	1 cut(s)	711
XapI	RAATTY	1 cut(s)	534
XceI	RCATGY	1 cut(s)	280
XspI	CTAG	2 cut(s)	12, 524

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.