Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0040667.1

Orthogroup ID

OG0008687

Physical Location & Seq

Genomic Coordinates Forward (+)

2608 .. 5524

Gene Structure 2917 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_sc0040667.1_g000002.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 891 bp

atgaagaaaaagactagggtttcttcccctcagctctgcttcctcttcttccttctctcaaccaccaccacctttgccaccttcaccgtcaacccctccaaagtgaagcagatctcatggaaccccagagctttcgtgtacgaaggtttgctcaccgacttggaatgcgatcacttgatctccattgcgaaatcggagctgaagagatcggccgtcgccgataacttgtccggtcagagcaagctcagcgaggtgcgcaccagctccggcatgttcatccccaaggccaaggatcatattgttgctggtatagaggacaagcttgcaacatggacatttctcccaaaagagaatggagaagacatacaagtattgagatatgagcctgggcagaaatatgaaccacactatgattactttgctgacaaggtcaatattgcgcggggtggacatcgtatagcaactgtacttatgtatcttactgatgtggccaaaggtggtgaaacagtgtttcctctagcagaggaaattcaccgccgtaaggcttcagaaccagatgcaagtctctctgactgtgcaaagaaaggaattgcagtgaaaccacgaagaggagatgcccttcttttcttcagtctccacccaaacgcagttccagacgaaaacagtctccatgcggggtgcccagtgattgaaggtgagaaatggtcagcgacaaagtggattcatgttgactcgtttgacaagatcttggatacgggtgggaactgcacagatctaaatgagagttgtgacagatgggctgcccttggggaatgcaccaagaaccgagagtatatggttggatctgctgacctccctggctactgtaggaggagttgtaaggtgtgttag

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0004656 GO:0006082 GO:0006464 GO:0006520 GO:0006575 GO:0006807 GO:0008150 GO:0008152 GO:0009987 GO:0016491 GO:0016705 GO:0016706 GO:0018126 GO:0018193 GO:0018208 GO:0018401 GO:0019471 GO:0019511 GO:0019538 GO:0019752 GO:0019798 GO:0031543 GO:0031545 GO:0036211 GO:0043170 GO:0043412 GO:0043436 GO:0044237 GO:0044238 GO:0044260 GO:0044267 GO:0044281 GO:0051213 GO:0055114 GO:0071704 GO:0140096 GO:1901564 GO:1901605

KEGG Pathways

Metabolic & Signaling

ko00330 ko01100 map00330 map01100

Pfam Domains

Protein Families

2OG-FeII_Oxy_3 ShK

Protein Analysis

296

Amino Acids

32.94

Weight (kDa)

7.55

Isoelectric Point (pI)

50.28

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0008687)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G06300 AT5G18900
fragaria_vesca	FvH4_4g16790 FvH4_4g16790
malus_domestica	MD13G1176400.v1.1 MD16G1178200.v1.1
prunus_persica	Prupe.1G145500_v2.0.a1 Prupe.1G145500_v2.0.a1 Prupe.1G145500_v2.0.a1
pyrus_communis	pycom13g15220 pycom16g14970
rosa_chinensis	RchiOBHm_Chr4g0420361
rosa_laevigata	RLG00000007770
rosa_multiflora	Rmu_sc0002248.1_g000004 Rmu_sc0040667.1_g000002
rosa_roxburghii	Rroxscaffold_5G00363000
rosa_rugosa	Rorug04G0163500 Rorug04G0163500
rosa_samantha	Rh4AG224700 Rh4BG227700 Rh4CG239200 Rh4DG223200
rosa_wichuraiana	Rw4G019400

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc16I	TGCGCA	1 cut(s)	257
AccB1I	GGYRCC	1 cut(s)	678
AccII	CGCG	1 cut(s)	442
AciI	CCGC	3 cut(s)	442, 535, 674
AclWI	GGATC	2 cut(s)	300, 850
AcoI	YGGCCR	2 cut(s)	210, 489
AcsI	RAATTY	1 cut(s)	528
AcuI	CTGAAG	3 cut(s)	221, 531, 613
AfaI	GTAC	2 cut(s)	140, 468
AfiI	CCNNNNNNNGG	2 cut(s)	541, 608
AgsI	TTSAA	1 cut(s)	692
AjnI	CCWGG	2 cut(s)	385, 856
AluBI	AGCT	6 cut(s)	34, 131, 199, 244, 264, 322
AluI	AGCT	6 cut(s)	34, 131, 199, 244, 264, 322
Alw26I	GTCTC	3 cut(s)	569, 638, 671
AlwI	GGATC	2 cut(s)	300, 850
AoxI	GGCC	3 cut(s)	210, 285, 489
ApeKI	GCWGC	1 cut(s)	800
ApoI	RAATTY	1 cut(s)	528
AspLEI	GCGC	2 cut(s)	258, 442
AsuHPI	GGTGA	5 cut(s)	76, 145, 512, 524, 707
BaeGI	GKGCMC	1 cut(s)	683
BaeI	ACNNNNGTAYC	2 cut(s)	458, 491
BalI	TGGCCA	1 cut(s)	491
BanI	GGYRCC	1 cut(s)	678
BbsI	GAAGAC	1 cut(s)	366
BbvCI	CCTCAGC	1 cut(s)	30
BbvI	GCAGC	1 cut(s)	787
BccI	CCATC	1 cut(s)	789
BceAI	ACGGC	2 cut(s)	197, 522
BciT130I	CCWGG	2 cut(s)	387, 858
BciVI	GTATCC	1 cut(s)	745
BcoDI	GTCTC	3 cut(s)	569, 638, 671
BfaI	CTAG	2 cut(s)	15, 518
BfmI	CTRYAG	1 cut(s)	865
BfuI	GTATCC	1 cut(s)	745
BglII	AGATCT	3 cut(s)	111, 744, 772
BisI	GCNGC	1 cut(s)	801
BlpI	GCTNAGC	1 cut(s)	245
BlsI	GCNGC	1 cut(s)	802
Bme1390I	CCNGG	2 cut(s)	387, 858
BmiI	GGNNCC	2 cut(s)	122, 680
BmrFI	CCNGG	2 cut(s)	387, 858
BmrI	ACTGGG	1 cut(s)	677
BmsI	GCATC	2 cut(s)	547, 604
BmuI	ACTGGG	1 cut(s)	677
BpiI	GAAGAC	1 cut(s)	366
Bpu10I	CCTNAGC	1 cut(s)	30
Bpu1102I	GCTNAGC	1 cut(s)	245
BsaJI	CCNNGG	5 cut(s)	282, 288, 386, 805, 856
BsaWI	WCCGGW	1 cut(s)	230
BsaXI	ACNNNNNCTCC	3 cut(s)	164, 194, 862
Bsc4I	CCNNNNNNNGG	2 cut(s)	541, 608
Bse1I	ACTGG	1 cut(s)	683
Bse3DI	GCAATG	1 cut(s)	183
BseBI	CCWGG	2 cut(s)	387, 858
BseDI	CCNNGG	5 cut(s)	282, 288, 386, 805, 856
BseGI	GGATG	1 cut(s)	276
BseLI	CCNNNNNNNGG	2 cut(s)	541, 608
BseMI	GCAATG	1 cut(s)	183
BseMII	CTCAG	2 cut(s)	44, 259
BseNI	ACTGG	1 cut(s)	683
BseRI	GAGGAG	2 cut(s)	624, 886
BseSI	GKGCMC	1 cut(s)	683
BseX3I	CGGCCG	1 cut(s)	210
BseXI	GCAGC	1 cut(s)	787
BsgI	GTGCAG	1 cut(s)	751
Bsh1236I	CGCG	1 cut(s)	442
Bsh1285I	CGRYCG	1 cut(s)	213
BshFI	GGCC	3 cut(s)	212, 287, 491
BshNI	GGYRCC	1 cut(s)	678
BsiEI	CGRYCG	1 cut(s)	213
BsiSI	CCGG	2 cut(s)	231, 267
BslI	CCNNNNNNNGG	2 cut(s)	541, 608
BsmAI	GTCTC	3 cut(s)	569, 638, 671
BsmI	GAATGC	2 cut(s)	170, 818
BsnI	GGCC	3 cut(s)	212, 287, 491
Bsp1286I	GDGCHC	1 cut(s)	683
Bsp143I	GATC	8 cut(s)	111, 169, 177, 206, 292, 744, 772, 842
Bsp1720I	GCTNAGC	1 cut(s)	245
BspACI	CCGC	3 cut(s)	442, 535, 674
BspANI	GGCC	3 cut(s)	212, 287, 491
BspCNI	CTCAG	2 cut(s)	43, 258
BspFNI	CGCG	1 cut(s)	442
BspLI	GGNNCC	2 cut(s)	122, 680
BspPI	GGATC	2 cut(s)	300, 850
BspT107I	GGYRCC	1 cut(s)	678
BsrDI	GCAATG	1 cut(s)	183
BsrI	ACTGG	1 cut(s)	683
BssECI	CCNNGG	5 cut(s)	282, 288, 386, 805, 856
BssMI	GATC	8 cut(s)	111, 169, 177, 206, 292, 744, 772, 842
BssT1I	CCWWGG	3 cut(s)	282, 288, 805
Bst2UI	CCWGG	2 cut(s)	387, 858
Bst4CI	ACNGT	6 cut(s)	88, 466, 508, 575, 665, 866
Bst6I	CTCTTC	3 cut(s)	50, 197, 601
BstC8I	GCNNGC	2 cut(s)	242, 324
BstDEI	CTNAG	2 cut(s)	30, 245
BstF5I	GGATG	1 cut(s)	276
BstFNI	CGCG	1 cut(s)	442
BstHHI	GCGC	2 cut(s)	258, 442
BstKTI	GATC	8 cut(s)	114, 172, 180, 209, 295, 747, 775, 845
BstMAI	GTCTC	3 cut(s)	569, 638, 671
BstMBI	GATC	8 cut(s)	111, 169, 177, 206, 292, 744, 772, 842
BstMCI	CGRYCG	1 cut(s)	213
BstMWI	GCNNNNNNNGC	2 cut(s)	246, 255
BstNI	CCWGG	2 cut(s)	387, 858
BstNSI	RCATGY	1 cut(s)	274
BstSCI	CCNGG	2 cut(s)	385, 856
BstSFI	CTRYAG	1 cut(s)	865
BstSLI	GKGCMC	1 cut(s)	683
BstUI	CGCG	1 cut(s)	442
BstV1I	GCAGC	1 cut(s)	787
BstV2I	GAAGAC	1 cut(s)	366
BstX2I	RGATCY	4 cut(s)	111, 744, 772, 842
BstYI	RGATCY	4 cut(s)	111, 744, 772, 842
BstZI	CGGCCG	1 cut(s)	210
BsuI	GTATCC	1 cut(s)	745
BsuRI	GGCC	3 cut(s)	212, 287, 491
BtsCI	GGATG	1 cut(s)	276
BtsI	GCAGTG	1 cut(s)	600
BtsIMutI	CAGTG	3 cut(s)	513, 600, 690
Cac8I	GCNNGC	2 cut(s)	242, 324
CfoI	GCGC	2 cut(s)	258, 442
Csp6I	GTAC	2 cut(s)	139, 467
CspCI	CAANNNNNGTGG	2 cut(s)	55, 90
CviAII	CATG	5 cut(s)	117, 271, 330, 671, 725
CviQI	GTAC	2 cut(s)	139, 467
DdeI	CTNAG	2 cut(s)	30, 245
DpnI	GATC	8 cut(s)	113, 171, 179, 208, 294, 746, 774, 844
DpnII	GATC	8 cut(s)	111, 169, 177, 206, 292, 744, 772, 842
EaeI	YGGCCR	2 cut(s)	210, 489
EagI	CGGCCG	1 cut(s)	210
Eam1104I	CTCTTC	3 cut(s)	50, 197, 601
EarI	CTCTTC	3 cut(s)	50, 197, 601
EclXI	CGGCCG	1 cut(s)	210
Eco130I	CCWWGG	3 cut(s)	282, 288, 805
Eco52I	CGGCCG	1 cut(s)	210
Eco57I	CTGAAG	3 cut(s)	221, 531, 613
EcoRII	CCWGG	2 cut(s)	385, 856
EcoT14I	CCWWGG	3 cut(s)	282, 288, 805
ErhI	CCWWGG	3 cut(s)	282, 288, 805
FaeI	CATG	5 cut(s)	120, 274, 333, 674, 728
FatI	CATG	5 cut(s)	116, 270, 329, 670, 724
FauI	CCCGC	2 cut(s)	435, 667
Fnu4HI	GCNGC	1 cut(s)	801
FokI	GGATG	1 cut(s)	263
Fsp4HI	GCNGC	1 cut(s)	801
FspAI	RTGCGCAY	1 cut(s)	257
FspBI	CTAG	2 cut(s)	15, 518
FspI	TGCGCA	1 cut(s)	257
GlaI	GCGC	2 cut(s)	257, 441
GluI	GCNGC	1 cut(s)	801
HaeIII	GGCC	3 cut(s)	212, 287, 491
HapII	CCGG	2 cut(s)	231, 267
HhaI	GCGC	2 cut(s)	258, 442
Hin1II	CATG	5 cut(s)	120, 274, 333, 674, 728
Hin6I	GCGC	2 cut(s)	256, 440
HinP1I	GCGC	2 cut(s)	256, 440
HincII	GTYRAC	2 cut(s)	91, 730
HindII	GTYRAC	2 cut(s)	91, 730
HindIII	AAGCTT	1 cut(s)	320
HinfI	GANTC	2 cut(s)	721, 731
HpaII	CCGG	2 cut(s)	231, 267
HphI	GGTGA	5 cut(s)	76, 145, 512, 524, 707
Hpy166II	GTNNAC	4 cut(s)	91, 139, 449, 730
Hpy188I	TCNGA	4 cut(s)	196, 237, 550, 571
Hpy188III	TCNNGA	1 cut(s)	653
Hpy8I	GTNNAC	4 cut(s)	91, 139, 449, 730
Hpy99I	CGWCG	1 cut(s)	218
HpyAV	CCTTC	5 cut(s)	62, 91, 137, 629, 686
HpyCH4III	ACNGT	6 cut(s)	88, 466, 508, 575, 665, 866
HpyCH4V	TGCA	6 cut(s)	326, 560, 578, 593, 768, 816
HpyF10VI	GCNNNNNNNGC	2 cut(s)	246, 255
HpyF3I	CTNAG	2 cut(s)	30, 245
Hsp92II	CATG	5 cut(s)	120, 274, 333, 674, 728
HspAI	GCGC	2 cut(s)	256, 440
Kzo9I	GATC	8 cut(s)	111, 169, 177, 206, 292, 744, 772, 842
LmnI	GCTCC	2 cut(s)	196, 269
Lsp1109I	GCAGC	1 cut(s)	787
LweI	GCATC	2 cut(s)	547, 604
MaeI	CTAG	2 cut(s)	15, 518
MaeIII	GTNAC	1 cut(s)	788
MalI	GATC	8 cut(s)	113, 171, 179, 208, 294, 746, 774, 844
MboI	GATC	8 cut(s)	111, 169, 177, 206, 292, 744, 772, 842
MboII	GAAGA	8 cut(s)	15, 16, 37, 40, 214, 371, 618, 619
MflI	RGATCY	4 cut(s)	111, 744, 772, 842
MhlI	GDGCHC	1 cut(s)	683
MlsI	TGGCCA	1 cut(s)	491
MluCI	AATT	2 cut(s)	528, 588
MluNI	TGGCCA	1 cut(s)	491
MlyI	GAGTC	1 cut(s)	725
MmeI	TCCRAC	1 cut(s)	820
Mox20I	TGGCCA	1 cut(s)	491
MscI	TGGCCA	1 cut(s)	491
Msp20I	TGGCCA	1 cut(s)	491
MspI	CCGG	2 cut(s)	231, 267
MspR9I	CCNGG	2 cut(s)	387, 858
Mva1269I	GAATGC	2 cut(s)	170, 818
MvaI	CCWGG	2 cut(s)	387, 858
MvnI	CGCG	1 cut(s)	442
MwoI	GCNNNNNNNGC	2 cut(s)	246, 255
NdeII	GATC	8 cut(s)	111, 169, 177, 206, 292, 744, 772, 842
NlaIII	CATG	5 cut(s)	120, 274, 333, 674, 728
NlaIV	GGNNCC	2 cut(s)	122, 680
NmuCI	GTSAC	1 cut(s)	788
NsbI	TGCGCA	1 cut(s)	257
NspI	RCATGY	1 cut(s)	274
PctI	GAATGC	2 cut(s)	170, 818
PfeI	GAWTC	1 cut(s)	721
PflFI	GACNNNGTC	1 cut(s)	428
PkrI	GCNGC	1 cut(s)	802
PleI	GAGTC	1 cut(s)	725
PpsI	GAGTC	1 cut(s)	725
Psp6I	CCWGG	2 cut(s)	385, 856
PspGI	CCWGG	2 cut(s)	385, 856
PspN4I	GGNNCC	2 cut(s)	122, 680
PsuI	RGATCY	4 cut(s)	111, 744, 772, 842
PsyI	GACNNNGTC	1 cut(s)	428
RsaI	GTAC	2 cut(s)	140, 468
RsaNI	GTAC	2 cut(s)	139, 467
SatI	GCNGC	1 cut(s)	801
Sau3AI	GATC	8 cut(s)	111, 169, 177, 206, 292, 744, 772, 842
SchI	GAGTC	1 cut(s)	725
ScrFI	CCNGG	2 cut(s)	387, 858
SduI	GDGCHC	1 cut(s)	683
SfaNI	GCATC	2 cut(s)	547, 604
SfcI	CTRYAG	1 cut(s)	865
Sse9I	AATT	2 cut(s)	528, 588
SsiI	CCGC	3 cut(s)	442, 535, 674
SspI	AATATT	1 cut(s)	436
SspMI	CTAG	2 cut(s)	15, 518
StyD4I	CCNGG	2 cut(s)	385, 856
StyI	CCWWGG	3 cut(s)	282, 288, 805
TaaI	ACNGT	6 cut(s)	88, 466, 508, 575, 665, 866
TasI	AATT	2 cut(s)	528, 588
TatI	WGTACW	1 cut(s)	466
TfiI	GAWTC	1 cut(s)	721
TscAI	CASTG	3 cut(s)	513, 600, 690
TseFI	GTSAC	1 cut(s)	788
TseI	GCWGC	1 cut(s)	800
Tsp45I	GTSAC	1 cut(s)	788
TspDTI	ATGAA	4 cut(s)	17, 265, 414, 713
TspRI	CASTG	3 cut(s)	513, 600, 690
Tth111I	GACNNNGTC	1 cut(s)	428
XapI	RAATTY	1 cut(s)	528
XceI	RCATGY	1 cut(s)	274
XspI	CTAG	2 cut(s)	15, 518

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.