AT3G06690

acyl-coenzyme A oxidase

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
arabidopsis_thaliana
3
OG0011873
Physical Location & Seq
Reverse (-)
2115426 .. 2116825
1400 bp
Loading structure...
UTR
Exon/CDS
Intron
AT3G06690.1

Sequence Viewer

Length: 564 bp
ATGACTAAAGAACCCATTTACTCTCCCCGAATGTTACACAGAGATCCTGATAGTCCACGTCCTGTATTACCGACTCAACTCACATCATCAACCCTCAGATGCAGCCAATTCCAGACAAATGTGTTCTGCTTAAGAGAGCGAGATCTTCTAGAGCGATTTACTTCTGAAGTTGCACAGCTTCAAGGGAGAGGAGAAAGTCGAGAATTCTCTTTCCTCCTGAGTCATCAACTTGCTGAAGACTTAGGTAAAGCTTTCACAGAGAAAGCAATGCTTCAAACCATTTTGGATGCTGAGGCAAAACTACCTACTGGCTCAGTAAAGGATGTGTTGGGTCTTGTAAGATCAATGTACGCATTGATCAGCCTGGAAGAAGATCCATCGTTGCTGCGATATGGTTACCTATCTCAGGATAATGTTGGAGATGTGAGGAGAGAAGTTTCAAAGCTCTGTGGAGAGCTTAGACCACACGCGCTTGCACTCGTCACTTCATTCGGCATTCCAGACTCCTTCTTGAGTCCAATTGCATTCAACTGGGTCGAAGCCAATACTTGGTCTTCAGTTTAG

Protein Analysis

187

Amino Acids

21.04

Weight (kDa)

5.44

Isoelectric Point (pI)

45.25

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
ACOX PF01756 40 - 171 1.4e-16 Acyl-CoA oxidase
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
Loading...
Style Settings
Image
Tree File
Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0011873)

Species Orthologous Gene IDs
arabidopsis_thaliana AT1G06290 AT1G06310 AT3G06690
fragaria_vesca FvH4_6g26900 FvH4_6g26900 FvH4_6g26900
malus_domestica MD17G1234100.v1.1
prunus_persica Prupe.3G127000_v2.0.a1
pyrus_communis pycom17g23740
rosa_chinensis RchiOBHm_Chr2g0128641
rosa_laevigata RLG00000019014
rosa_multiflora Rmu_sc0000837.1_g000086 Rmu_sc0003465.1_g000047
rosa_roxburghii Rroxscaffold_2G00115420 Rroxscaffold_2G00115900
rosa_rugosa Rorug02G0279600
rosa_samantha Rh2DG357400
rosa_wichuraiana Rw2G026890 Rw2G027150

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB7I CCANNNNNTGG 1 cut(s) 549
AccII CGCG 1 cut(s) 470
AclWI GGATC 2 cut(s) 38, 368
AcsI RAATTY 1 cut(s) 203
AcuI CTGAAG 3 cut(s) 186, 255, 540
AfaI GTAC 1 cut(s) 350
AfiI CCNNNNNNNGG 2 cut(s) 406, 549
AflII CTTAAG 1 cut(s) 130
AgsI TTSAA 4 cut(s) 182, 275, 441, 529
AjiI CACGTC 1 cut(s) 59
AjnI CCWGG 1 cut(s) 363
AluBI AGCT 4 cut(s) 178, 251, 445, 457
AluI AGCT 4 cut(s) 178, 251, 445, 457
AlwI GGATC 2 cut(s) 38, 368
ApeKI GCWGC 2 cut(s) 102, 385
ApoI RAATTY 1 cut(s) 203
AspLEI GCGC 1 cut(s) 472
BbsI GAAGAC 2 cut(s) 243, 546
BbvCI CCTCAGC 1 cut(s) 291
BbvI GCAGC 2 cut(s) 114, 372
BccI CCATC 1 cut(s) 385
BciT130I CCWGG 1 cut(s) 365
BclI TGATCA 1 cut(s) 357
BfaI CTAG 1 cut(s) 149
BfrI CTTAAG 1 cut(s) 130
BglII AGATCT 1 cut(s) 142
BisI GCNGC 2 cut(s) 103, 386
BlsI GCNGC 2 cut(s) 104, 387
Bme1390I CCNGG 1 cut(s) 365
BmgBI CACGTC 1 cut(s) 59
BmrFI CCNGG 1 cut(s) 365
BmrI ACTGGG 1 cut(s) 541
BmsI GCATC 2 cut(s) 89, 277
BmuI ACTGGG 1 cut(s) 541
BpiI GAAGAC 2 cut(s) 243, 546
Bpu10I CCTNAGC 1 cut(s) 291
BpuEI CTTGAG 1 cut(s) 532
Bsc4I CCNNNNNNNGG 2 cut(s) 406, 549
Bse1I ACTGG 2 cut(s) 313, 536
Bse3DI GCAATG 1 cut(s) 273
BseBI CCWGG 1 cut(s) 365
BseGI GGATG 2 cut(s) 292, 328
BseLI CCNNNNNNNGG 2 cut(s) 406, 549
BseMI GCAATG 1 cut(s) 273
BseMII CTCAG 5 cut(s) 109, 209, 282, 327, 419
BseNI ACTGG 2 cut(s) 313, 536
BseRI GAGGAG 2 cut(s) 204, 442
BseXI GCAGC 2 cut(s) 114, 372
Bsh1236I CGCG 1 cut(s) 470
BslI CCNNNNNNNGG 2 cut(s) 406, 549
BsmI GAATGC 2 cut(s) 495, 524
Bsp143I GATC 5 cut(s) 43, 142, 341, 357, 373
BspCNI CTCAG 5 cut(s) 108, 210, 283, 326, 418
BspFNI CGCG 1 cut(s) 470
BspPI GGATC 2 cut(s) 38, 368
BspTI CTTAAG 1 cut(s) 130
BsrDI GCAATG 1 cut(s) 273
BsrI ACTGG 2 cut(s) 313, 536
BssMI GATC 5 cut(s) 43, 142, 341, 357, 373
Bst2UI CCWGG 1 cut(s) 365
BstAFI CTTAAG 1 cut(s) 130
BstC8I GCNNGC 1 cut(s) 474
BstDEI CTNAG 7 cut(s) 95, 218, 241, 291, 313, 405, 458
BstEII GGTNACC 1 cut(s) 395
BstENI CCTNNNNNAGG 1 cut(s) 404
BstF5I GGATG 2 cut(s) 292, 328
BstFNI CGCG 1 cut(s) 470
BstHHI GCGC 1 cut(s) 472
BstKTI GATC 5 cut(s) 46, 145, 344, 360, 376
BstMBI GATC 5 cut(s) 43, 142, 341, 357, 373
BstNI CCWGG 1 cut(s) 365
BstPI GGTNACC 1 cut(s) 395
BstSCI CCNGG 1 cut(s) 363
BstUI CGCG 1 cut(s) 470
BstV1I GCAGC 2 cut(s) 114, 372
BstV2I GAAGAC 2 cut(s) 243, 546
BstX2I RGATCY 3 cut(s) 43, 142, 373
BstYI RGATCY 3 cut(s) 43, 142, 373
BtrI CACGTC 1 cut(s) 59
BtsCI GGATG 2 cut(s) 292, 328
Cac8I GCNNGC 1 cut(s) 474
CfoI GCGC 1 cut(s) 472
Csp6I GTAC 1 cut(s) 349
CviJI RGCY 8 cut(s) 105, 178, 251, 312, 363, 445, 457, 542
CviKI_1 RGCY 8 cut(s) 105, 178, 251, 312, 363, 445, 457, 542
CviQI GTAC 1 cut(s) 349
DdeI CTNAG 7 cut(s) 95, 218, 241, 291, 313, 405, 458
DpnI GATC 5 cut(s) 45, 144, 343, 359, 375
DpnII GATC 5 cut(s) 43, 142, 341, 357, 373
Eco57I CTGAAG 3 cut(s) 186, 255, 540
Eco91I GGTNACC 1 cut(s) 395
EcoNI CCTNNNNNAGG 1 cut(s) 404
EcoO65I GGTNACC 1 cut(s) 395
EcoRI GAATTC 1 cut(s) 203
EcoRII CCWGG 1 cut(s) 363
FaiI YATR 1 cut(s) 393
FalI AAGNNNNNCTT 2 cut(s) 255, 287
FbaI TGATCA 1 cut(s) 357
Fnu4HI GCNGC 2 cut(s) 103, 386
FokI GGATG 2 cut(s) 299, 335
Fsp4HI GCNGC 2 cut(s) 103, 386
FspBI CTAG 1 cut(s) 149
GlaI GCGC 1 cut(s) 471
GluI GCNGC 2 cut(s) 103, 386
HhaI GCGC 1 cut(s) 472
Hin6I GCGC 1 cut(s) 470
HinP1I GCGC 1 cut(s) 470
HindIII AAGCTT 1 cut(s) 249
HinfI GANTC 4 cut(s) 73, 220, 503, 514
Hpy166II GTNNAC 1 cut(s) 56
Hpy188I TCNGA 2 cut(s) 98, 166
Hpy188III TCNNGA 8 cut(s) 47, 112, 149, 200, 217, 407, 500, 511
Hpy8I GTNNAC 1 cut(s) 56
HpyAV CCTTC 1 cut(s) 517
HpyCH4IV ACGT 1 cut(s) 58
HpyCH4V TGCA 4 cut(s) 102, 173, 476, 524
HpyF3I CTNAG 7 cut(s) 95, 218, 241, 291, 313, 405, 458
HpySE526I ACGT 1 cut(s) 58
HspAI GCGC 1 cut(s) 470
Ksp22I TGATCA 1 cut(s) 357
Kzo9I GATC 5 cut(s) 43, 142, 341, 357, 373
Lsp1109I GCAGC 2 cut(s) 114, 372
LweI GCATC 2 cut(s) 89, 277
MaeI CTAG 1 cut(s) 149
MaeII ACGT 1 cut(s) 58
MaeIII GTNAC 3 cut(s) 33, 395, 481
MalI GATC 5 cut(s) 45, 144, 343, 359, 375
MboI GATC 5 cut(s) 43, 142, 341, 357, 373
MboII GAAGA 5 cut(s) 137, 248, 380, 383, 546
MfeI CAATTG 1 cut(s) 519
MflI RGATCY 3 cut(s) 43, 142, 373
MluCI AATT 3 cut(s) 107, 203, 519
MlyI GAGTC 4 cut(s) 67, 229, 497, 523
MmeI TCCRAC 1 cut(s) 397
MnlI CCTC 5 cut(s) 104, 182, 224, 286, 420
MseI TTAA 1 cut(s) 131
MspCI CTTAAG 1 cut(s) 130
MspR9I CCNGG 1 cut(s) 365
MunI CAATTG 1 cut(s) 519
Mva1269I GAATGC 2 cut(s) 495, 524
MvaI CCWGG 1 cut(s) 365
MvnI CGCG 1 cut(s) 470
NdeII GATC 5 cut(s) 43, 142, 341, 357, 373
NmuCI GTSAC 1 cut(s) 481
PctI GAATGC 2 cut(s) 495, 524
PflMI CCANNNNNTGG 1 cut(s) 549
PkrI GCNGC 2 cut(s) 104, 387
PleI GAGTC 4 cut(s) 67, 228, 497, 522
PpsI GAGTC 4 cut(s) 67, 228, 497, 522
Psp6I CCWGG 1 cut(s) 363
PspEI GGTNACC 1 cut(s) 395
PspGI CCWGG 1 cut(s) 363
PsuI RGATCY 3 cut(s) 43, 142, 373
RsaI GTAC 1 cut(s) 350
RsaNI GTAC 1 cut(s) 349
SaqAI TTAA 1 cut(s) 131
SatI GCNGC 2 cut(s) 103, 386
Sau3AI GATC 5 cut(s) 43, 142, 341, 357, 373
SchI GAGTC 4 cut(s) 67, 229, 497, 523
ScrFI CCNGG 1 cut(s) 365
SetI ASST 8 cut(s) 61, 180, 247, 253, 307, 402, 447, 459
SfaNI GCATC 2 cut(s) 89, 277
SmlI CTYRAG 2 cut(s) 130, 511
SmoI CTYRAG 2 cut(s) 130, 511
Sse9I AATT 3 cut(s) 107, 203, 519
SspMI CTAG 1 cut(s) 149
StyD4I CCNGG 1 cut(s) 363
TaiI ACGT 1 cut(s) 61
TaqI TCGA 2 cut(s) 199, 537
TasI AATT 3 cut(s) 107, 203, 519
Tru1I TTAA 1 cut(s) 131
Tru9I TTAA 1 cut(s) 131
TseFI GTSAC 1 cut(s) 481
TseI GCWGC 2 cut(s) 102, 385
Tsp45I GTSAC 1 cut(s) 481
TspDTI ATGAA 1 cut(s) 477
Van91I CCANNNNNTGG 1 cut(s) 549
Vha464I CTTAAG 1 cut(s) 130
XagI CCTNNNNNAGG 1 cut(s) 404
XapI RAATTY 1 cut(s) 203
XbaI TCTAGA 1 cut(s) 148
XspI CTAG 1 cut(s) 149
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.