Basic Information

Type: gene

Biological Identity

Species

rosa_rugosa

Chromosome

GWHBQTZ00000002

Orthogroup ID

OG0011873

Physical Location & Seq

Genomic Coordinates Forward (+)

30184063 .. 30184515

Gene Structure 453 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rorug02G0279600.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 453 bp

ATGGGCTACCAGTTCGCTTCAACTTCAGTTGGAGACCCGTATGGTCCGGTCTGGAGGGCTCTTTGGAAGGCAAAAGTCCCCAGTAAGGTTGCTATCTTTGGATGGCGGGCAATGCAGAACCTCCTTCCTACTCGAGCTGCTCTGTCGACCAAAGGGTATTCGGGGGATCTGCATTGTGTTGTCTGCTCCAATGCTATTGAATCAGTGGAGCATTTGTTCTGCCAGTGTCCCTTCTCTACAGAGATCCTAGGTGCTCCTCCGTTCCATCTTCAGTCTTCATCTGCCACTTGGAAGGACTGGTTCCTGGAGAGAGCTACTTCTATGCCTCCCGAGCTTTTTGATCAACTTCTTGTTCTGATGTGGAGTATCTGGAGGAATCGGAATGAGAAGCTGTGGAGGGATCAGACTCAAACAGGGTTGGGGGTTTGCGGCCTCTGCAATGGCCTGGTTTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000166 GO:0003674 GO:0003824 GO:0003995 GO:0003997 GO:0005488 GO:0006082 GO:0006629 GO:0006631 GO:0006635 GO:0008150 GO:0008152 GO:0009056 GO:0009062 GO:0009987 GO:0016042 GO:0016054 GO:0016491 GO:0016627 GO:0016634 GO:0019395 GO:0019752 GO:0030258 GO:0032787 GO:0033539 GO:0034440 GO:0036094 GO:0043167 GO:0043168 GO:0043436 GO:0044237 GO:0044238 GO:0044242 GO:0044248 GO:0044255 GO:0044281 GO:0044282 GO:0046395 GO:0048037 GO:0050660 GO:0050662 GO:0051791 GO:0055114 GO:0071704 GO:0072329 GO:0097159 GO:1901265 GO:1901363 GO:1901575

KEGG Pathways

Metabolic & Signaling

ko00071 ko00592 ko01040 ko01100 ko01110 ko01212 ko03320 ko04024 ko04146 map00071 map00592 map01040 map01100 map01110 map01212 map03320 map04024 map04146

Pfam Domains

Protein Families

ACOX Acyl-CoA_dh_1 Acyl-CoA_dh_M

Protein Analysis

150

Amino Acids

16.85

Weight (kDa)

8.25

Isoelectric Point (pI)

37.86

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
zf-RVT	PF13966	16 - 81	9.2e-18	zinc-binding in reverse transcriptase

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0011873)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G06290 AT1G06310 AT3G06690
fragaria_vesca	FvH4_6g26900 FvH4_6g26900 FvH4_6g26900
malus_domestica	MD17G1234100.v1.1
prunus_persica	Prupe.3G127000_v2.0.a1
pyrus_communis	pycom17g23740
rosa_chinensis	RchiOBHm_Chr2g0128641
rosa_laevigata	RLG00000019014
rosa_multiflora	Rmu_sc0000837.1_g000086 Rmu_sc0003465.1_g000047
rosa_roxburghii	Rroxscaffold_2G00115420 Rroxscaffold_2G00115900
rosa_rugosa	Rorug02G0279600
rosa_samantha	Rh2DG357400
rosa_wichuraiana	Rw2G026890 Rw2G027150

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccI	GTMKAC	1 cut(s)	146
AciI	CCGC	2 cut(s)	106, 429
AclWI	GGATC	3 cut(s)	174, 238, 408
AcuI	CTGAAG	2 cut(s)	9, 254
AfiI	CCNNNNNNNGG	1 cut(s)	85
AgsI	TTSAA	2 cut(s)	21, 200
AjnI	CCWGG	2 cut(s)	303, 444
AloI	GAACNNNNNNTCC	2 cut(s)	200, 232
AluBI	AGCT	4 cut(s)	137, 314, 334, 391
AluI	AGCT	4 cut(s)	137, 314, 334, 391
Alw21I	GWGCWC	1 cut(s)	256
Alw26I	GTCTC	1 cut(s)	27
AlwI	GGATC	3 cut(s)	174, 238, 408
Ama87I	CYCGRG	2 cut(s)	132, 329
AoxI	GGCC	2 cut(s)	430, 442
ApeKI	GCWGC	1 cut(s)	137
AspA2I	CCTAGG	1 cut(s)	247
AspS9I	GGNCC	1 cut(s)	44
AvaI	CYCGRG	2 cut(s)	132, 329
AvaII	GGWCC	1 cut(s)	44
AvrII	CCTAGG	1 cut(s)	247
BanII	GRGCYC	1 cut(s)	61
BbsI	GAAGAC	1 cut(s)	267
Bbv12I	GWGCWC	1 cut(s)	256
BbvI	GCAGC	1 cut(s)	124
BccI	CCATC	2 cut(s)	96, 273
BciT130I	CCWGG	2 cut(s)	305, 446
BclI	TGATCA	1 cut(s)	340
BcoDI	GTCTC	1 cut(s)	27
BfaI	CTAG	1 cut(s)	248
BfmI	CTRYAG	1 cut(s)	237
BisI	GCNGC	2 cut(s)	138, 430
BlnI	CCTAGG	1 cut(s)	247
BlsI	GCNGC	2 cut(s)	139, 431
Bme1390I	CCNGG	2 cut(s)	305, 446
Bme18I	GGWCC	1 cut(s)	44
BmeT110I	CYCGRG	2 cut(s)	132, 329
BmgT120I	GGNCC	1 cut(s)	44
BmiI	GGNNCC	1 cut(s)	302
BmrFI	CCNGG	2 cut(s)	305, 446
BmrI	ACTGGG	1 cut(s)	75
BmuI	ACTGGG	1 cut(s)	75
BpiI	GAAGAC	1 cut(s)	267
BpmI	CTGGAG	3 cut(s)	73, 326, 391
BsaI	GGTCTC	1 cut(s)	27
BsaJI	CCNNGG	1 cut(s)	247
BsaWI	WCCGGW	1 cut(s)	46
BsaXI	ACNNNNNCTCC	2 cut(s)	200, 230
Bsc4I	CCNNNNNNNGG	1 cut(s)	85
Bse1I	ACTGG	4 cut(s)	10, 81, 223, 302
Bse3DI	GCAATG	2 cut(s)	117, 445
BseBI	CCWGG	2 cut(s)	305, 446
BseDI	CCNNGG	1 cut(s)	247
BseGI	GGATG	1 cut(s)	107
BseLI	CCNNNNNNNGG	1 cut(s)	85
BseMI	GCAATG	2 cut(s)	117, 445
BseNI	ACTGG	4 cut(s)	10, 81, 223, 302
BseRI	GAGGAG	1 cut(s)	246
BseXI	GCAGC	1 cut(s)	124
BshFI	GGCC	2 cut(s)	432, 444
BsiHKAI	GWGCWC	1 cut(s)	256
BsiHKCI	CYCGRG	2 cut(s)	132, 329
BsiSI	CCGG	1 cut(s)	47
BslFI	GGGAC	2 cut(s)	62, 213
BslI	CCNNNNNNNGG	1 cut(s)	85
BsmAI	GTCTC	1 cut(s)	27
BsmFI	GGGAC	2 cut(s)	62, 213
BsnI	GGCC	2 cut(s)	432, 444
Bso31I	GGTCTC	1 cut(s)	27
BsoBI	CYCGRG	2 cut(s)	132, 329
Bsp1286I	GDGCHC	2 cut(s)	61, 256
Bsp143I	GATC	4 cut(s)	166, 243, 340, 400
BspACI	CCGC	2 cut(s)	106, 429
BspANI	GGCC	2 cut(s)	432, 444
BspLI	GGNNCC	1 cut(s)	302
BspPI	GGATC	3 cut(s)	174, 238, 408
BspTNI	GGTCTC	1 cut(s)	27
BsrDI	GCAATG	2 cut(s)	117, 445
BsrI	ACTGG	4 cut(s)	10, 81, 223, 302
BssECI	CCNNGG	1 cut(s)	247
BssMI	GATC	4 cut(s)	166, 243, 340, 400
BssT1I	CCWWGG	1 cut(s)	247
Bst2UI	CCWGG	2 cut(s)	305, 446
BstC8I	GCNNGC	1 cut(s)	108
BstF5I	GGATG	1 cut(s)	107
BstKTI	GATC	4 cut(s)	169, 246, 343, 403
BstMAI	GTCTC	1 cut(s)	27
BstMBI	GATC	4 cut(s)	166, 243, 340, 400
BstMWI	GCNNNNNNNGC	3 cut(s)	112, 331, 435
BstNI	CCWGG	2 cut(s)	305, 446
BstSCI	CCNGG	2 cut(s)	303, 444
BstSFI	CTRYAG	1 cut(s)	237
BstV1I	GCAGC	1 cut(s)	124
BstV2I	GAAGAC	1 cut(s)	267
BstX2I	RGATCY	2 cut(s)	166, 243
BstYI	RGATCY	2 cut(s)	166, 243
BsuRI	GGCC	2 cut(s)	432, 444
BtsCI	GGATG	1 cut(s)	107
BtsIMutI	CAGTG	2 cut(s)	210, 230
Cac8I	GCNNGC	1 cut(s)	108
Cfr13I	GGNCC	1 cut(s)	44
CviJI	RGCY	8 cut(s)	6, 59, 137, 314, 334, 391, 432, 444
CviKI_1	RGCY	8 cut(s)	6, 59, 137, 314, 334, 391, 432, 444
DpnI	GATC	4 cut(s)	168, 245, 342, 402
DpnII	GATC	4 cut(s)	166, 243, 340, 400
Eco130I	CCWWGG	1 cut(s)	247
Eco24I	GRGCYC	1 cut(s)	61
Eco31I	GGTCTC	1 cut(s)	27
Eco47I	GGWCC	1 cut(s)	44
Eco57I	CTGAAG	2 cut(s)	9, 254
Eco88I	CYCGRG	2 cut(s)	132, 329
EcoRII	CCWGG	2 cut(s)	303, 444
EcoT14I	CCWWGG	1 cut(s)	247
EcoT38I	GRGCYC	1 cut(s)	61
ErhI	CCWWGG	1 cut(s)	247
FaiI	YATR	2 cut(s)	42, 323
FaqI	GGGAC	2 cut(s)	62, 213
FauI	CCCGC	1 cut(s)	99
FbaI	TGATCA	1 cut(s)	340
FblI	GTMKAC	1 cut(s)	146
Fnu4HI	GCNGC	2 cut(s)	138, 430
FokI	GGATG	1 cut(s)	114
FriOI	GRGCYC	1 cut(s)	61
Fsp4HI	GCNGC	2 cut(s)	138, 430
FspBI	CTAG	1 cut(s)	248
GluI	GCNGC	2 cut(s)	138, 430
GsuI	CTGGAG	3 cut(s)	73, 326, 391
HaeIII	GGCC	2 cut(s)	432, 444
HapII	CCGG	1 cut(s)	47
HincII	GTYRAC	1 cut(s)	147
HindII	GTYRAC	1 cut(s)	147
HinfI	GANTC	3 cut(s)	200, 376, 406
HpaII	CCGG	1 cut(s)	47
Hpy166II	GTNNAC	1 cut(s)	147
Hpy188I	TCNGA	3 cut(s)	357, 381, 405
Hpy188III	TCNNGA	3 cut(s)	52, 329, 370
Hpy8I	GTNNAC	1 cut(s)	147
HpyAV	CCTTC	4 cut(s)	61, 134, 241, 286
HpyCH4V	TGCA	3 cut(s)	115, 172, 438
HpyF10VI	GCNNNNNNNGC	3 cut(s)	112, 331, 435
Ksp22I	TGATCA	1 cut(s)	340
Kzo9I	GATC	4 cut(s)	166, 243, 340, 400
LmnI	GCTCC	3 cut(s)	191, 208, 259
Lsp1109I	GCAGC	1 cut(s)	124
MaeI	CTAG	1 cut(s)	248
MalI	GATC	4 cut(s)	168, 245, 342, 402
MboI	GATC	4 cut(s)	166, 243, 340, 400
MboII	GAAGA	2 cut(s)	260, 267
MflI	RGATCY	2 cut(s)	166, 243
MhlI	GDGCHC	2 cut(s)	61, 256
MlyI	GAGTC	1 cut(s)	400
MmeI	TCCRAC	1 cut(s)	10
MnlI	CCTC	7 cut(s)	48, 131, 267, 336, 366, 390, 443
MspI	CCGG	1 cut(s)	47
MspR9I	CCNGG	2 cut(s)	305, 446
MvaI	CCWGG	2 cut(s)	305, 446
MwoI	GCNNNNNNNGC	3 cut(s)	112, 331, 435
NdeII	GATC	4 cut(s)	166, 243, 340, 400
NlaIV	GGNNCC	1 cut(s)	302
PaeR7I	CTCGAG	1 cut(s)	132
PfeI	GAWTC	2 cut(s)	200, 376
PfoI	TCCNGGA	1 cut(s)	303
PkrI	GCNGC	2 cut(s)	139, 431
PleI	GAGTC	1 cut(s)	400
PpsI	GAGTC	1 cut(s)	400
Psp6I	CCWGG	2 cut(s)	303, 444
PspGI	CCWGG	2 cut(s)	303, 444
PspN4I	GGNNCC	1 cut(s)	302
PspPI	GGNCC	1 cut(s)	44
PspXI	VCTCGAGB	1 cut(s)	132
PsuI	RGATCY	2 cut(s)	166, 243
SalI	GTCGAC	1 cut(s)	145
SatI	GCNGC	2 cut(s)	138, 430
Sau3AI	GATC	4 cut(s)	166, 243, 340, 400
Sau96I	GGNCC	1 cut(s)	44
SchI	GAGTC	1 cut(s)	400
ScrFI	CCNGG	2 cut(s)	305, 446
SduI	GDGCHC	2 cut(s)	61, 256
SetI	ASST	7 cut(s)	90, 123, 139, 253, 316, 336, 393
SfcI	CTRYAG	1 cut(s)	237
Sfr274I	CTCGAG	1 cut(s)	132
SinI	GGWCC	1 cut(s)	44
SlaI	CTCGAG	1 cut(s)	132
SmlI	CTYRAG	1 cut(s)	132
SmoI	CTYRAG	1 cut(s)	132
SsiI	CCGC	2 cut(s)	106, 429
SspMI	CTAG	1 cut(s)	248
StyD4I	CCNGG	2 cut(s)	303, 444
StyI	CCWWGG	1 cut(s)	247
TaqI	TCGA	2 cut(s)	133, 146
TauI	GCSGC	1 cut(s)	432
TfiI	GAWTC	2 cut(s)	200, 376
TscAI	CASTG	2 cut(s)	210, 230
TseI	GCWGC	1 cut(s)	137
TspDTI	ATGAA	1 cut(s)	267
TspGWI	ACGGA	1 cut(s)	249
TspRI	CASTG	2 cut(s)	210, 230
VpaK11BI	GGWCC	1 cut(s)	44
XhoI	CTCGAG	1 cut(s)	132
XmaJI	CCTAGG	1 cut(s)	247
XmiI	GTMKAC	1 cut(s)	146
XspI	CTAG	1 cut(s)	248

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.