Basic Information

Type: gene

Biological Identity

Species

rosa_laevigata

Chromosome

Chr4

Orthogroup ID

OG0011873

Physical Location & Seq

Genomic Coordinates Reverse (-)

44816915 .. 44821787

Gene Structure 4873 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

RLM00000019014

Sequence Viewer

CDS Protein Promoter (2k)

Length: 2025 bp

ATGGATCGGGTGACGTGGCGAACCCAAGTGCTCTCGAACCATCTCCACCGCTCCTCCGCCTCGTCCGCTCTGACGGCCAACCCGTGCGTGGGGTTTTCGCCGCCGGAGCTGACGGAGCGGTTCGAATTCGAGACGAAGGAGATGCGGAAGCTTCTGGACCACCACAATCTGGAGGAGCGGGACTGGCTGTTCGGGCTGATGAGGCAGAGCAAGCTGTTTAATCCGAAGGAGGCCGGCGACGGCCGGGTGTTTGTGTCGCCGGACTATAACCAGAGCATGGAACAGCAGAGGGAGATGACGATGAAGCGGATTGCCTACTTGTTAGATCGCGGGGTTTTCAGAGGTTGGCTATCGGAGAAAGGGGTTGAGGTTGAGTTGAGGAAGTTTGCGTTGCAAGAAGTTGCTGCGATTTATGATCATTCGCTCTCTGTCAAGATCGGTGTGCATTTCTTTCTATGGGGTGGTGCCATTCTGTTCTTTGGCACAAAGCGCCATCATGACAAGTGGCTGAGGGACACTGAGAATTATGCAATCAAGGGTTGCTTTGCAATGTCTGAGTTAGGGCACGGCAGTAATGTTCGAGGAATCGAAACAGTCACCACTTACGATTCAAAAACTGGAGAGTTTGTCATTAATACTCCTTGTGAATCTGCTCAGAAGTATTGGATTGGAGGGGCAGCTAATCATGCCACACACACTATAGTCTTTTCACAACTCATCATATCCGGGACCAATCAAGGCGTCCATGCATTTATAGCCCAGATCAGGGATGGAAATGGGAACATCTGTCCAAACATCCGTATTGCTGATTGTGGTCATAAAATTGGTTTAAATGGTGTTGATAATGGTCGAATATGGTTTGACAATGTCCGAATCCCCAGGGAAAACTTGTTGAATTCAGTAGCAGATGTTTCTGCAGAAGGGCAATATCTGAGTGCAATAAAAGACCCAGATCAGAGATTCGCAGCATTCTTGGCTCCATTGACATCTGGACGTGTAACTATAGCAACCAGTGCAATTTACACAGCAAAGATAAGTTTAGCAATTGCCATAAGGTACTCTTTGACAAGGCGGGCTTTTTCGGTTACACCAAATGGACCGGAAGTTCTATTGCTTGATTACCCAAGTCATCAACACCGGCTCTTGCCTCTCCTTGCAAAGACATATGCTATGACTTTTGCTGCAAATCACCTAAAGATGATCTATGTTAGGAGGACTCCTGAGTCAAGCAAAACCATCCATGTTGTTTCAAGTGCATTCAAGGCTACACTTACCTGGCATAACATGCGAACTCTTCAGGAGTGCCGTGAAGCCTGTGGAGGGCAAGGTCTGAAGACTGAAAACCGCATTGGTAATCTGAAAGGTGAATTTGATGTGCAGTCTACTTTTGAGGGGGACAATAATGTTCTGATGCAGCAGGTCAGCAAGGCACTTCTTGCAGAGTTTATAACAGCTCAGAAGAGAAGTAAACCATTTAAAGCTTTGGGATTAGAACATATGAATAAACCTTGCCCTGTCATTCCATCTCACCTTACAAGTTCTACTCTTCAGAGTGTCGAATTTCAGATGGATGCATTTTGCTTAAGAGAGCGGGATCTACTGAATCGCTTTGCTGTGGAAGTGTCACAACGACAAAAACAGGGAGAAAGCAAAGAGTACTCGGTTCTTCTGAGTTATCAGCTTGCAGATGATTTGGGAAGAGCTTTCTCAGATCGAACAATATTGCAAACCTTCATCGATGTAGAGGCAACTGTACCTGCTGGTTCACTGAAGAATGTCTTAGCTACGTTGAGGACCTTGTATGCATTGATTTGCTTGGAAGAGGATGCGGCATTCCTCCGATATGGGTACATATCAATGGATAATGTTGCTGCTGTGAGGAAAGAAGTAAGCAGCCTCTGCAGAGAGCTACGACCCCATGCACTTGCCTTGGTCAGTTCTTTTGGCATCCCTGATGCTTTCCTGGGTCCTATAGCTTTTAACTGGATTGCGTCAAATTCATGGTCTTCCGTTCAGCAGCACTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000166 GO:0003674 GO:0003824 GO:0003995 GO:0003997 GO:0005488 GO:0006082 GO:0006629 GO:0006631 GO:0006635 GO:0008150 GO:0008152 GO:0009056 GO:0009062 GO:0009987 GO:0016042 GO:0016054 GO:0016491 GO:0016627 GO:0016634 GO:0019395 GO:0019752 GO:0030258 GO:0032787 GO:0033539 GO:0034440 GO:0036094 GO:0043167 GO:0043168 GO:0043436 GO:0044237 GO:0044238 GO:0044242 GO:0044248 GO:0044255 GO:0044281 GO:0044282 GO:0046395 GO:0048037 GO:0050660 GO:0050662 GO:0051791 GO:0055114 GO:0071704 GO:0072329 GO:0097159 GO:1901265 GO:1901363 GO:1901575

KEGG Pathways

Metabolic & Signaling

ko00071 ko00592 ko01040 ko01100 ko01110 ko01212 ko03320 ko04024 ko04146 map00071 map00592 map01040 map01100 map01110 map01212 map03320 map04024 map04146

Pfam Domains

Protein Families

ACOX Acyl-CoA_dh_1 Acyl-CoA_dh_M

Protein Analysis

675

Amino Acids

75.62

Weight (kDa)

8.61

Isoelectric Point (pI)

35.69

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Acyl-CoA_dh_M	PF02770	181 - 290	2.7e-11	Acyl-CoA dehydrogenase, middle domain
Acyl-CoA_dh_1	PF00441	323 - 479	3.5e-10	Acyl-CoA dehydrogenase, C-terminal domain
ACOX_C_alpha1	PF22924	328 - 479	1.7e-41	Acyl-CoA oxidase, C-alpha1 domain
ACOX	PF01756	520 - 656	3.5e-19	Acyl-CoA oxidase

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0011873)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G06290 AT1G06310 AT3G06690
fragaria_vesca	FvH4_6g26900 FvH4_6g26900 FvH4_6g26900
malus_domestica	MD17G1234100.v1.1
prunus_persica	Prupe.3G127000_v2.0.a1
pyrus_communis	pycom17g23740
rosa_chinensis	RchiOBHm_Chr2g0128641
rosa_laevigata	RLG00000019014
rosa_multiflora	Rmu_sc0000837.1_g000086 Rmu_sc0003465.1_g000047
rosa_roxburghii	Rroxscaffold_2G00115420 Rroxscaffold_2G00115900
rosa_rugosa	Rorug02G0279600
rosa_samantha	Rh2DG357400
rosa_wichuraiana	Rw2G026890 Rw2G027150

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	1448
AasI	GACNNNNNNGTC	1 cut(s)	1222
Acc36I	ACCTGC	2 cut(s)	1408, 1765
AccB1I	GGYRCC	1 cut(s)	464
AccB7I	CCANNNNNTGG	2 cut(s)	169, 277
AccBSI	CCGCTC	5 cut(s)	51, 68, 118, 178, 1591
AccI	GTMKAC	1 cut(s)	1382
AccII	CGCG	1 cut(s)	330
AclWI	GGATC	2 cut(s)	12, 1602
AcoI	YGGCCR	2 cut(s)	75, 241
AcsI	RAATTY	5 cut(s)	125, 895, 1367, 1559, 1996
AcuI	CTGAAG	4 cut(s)	1280, 1352, 1532, 1790
AcyI	GRCGYC	1 cut(s)	741
AfaI	GTAC	4 cut(s)	1058, 1658, 1755, 1850
AfiI	CCNNNNNNNGG	7 cut(s)	88, 89, 169, 277, 765, 766, 1320
AflII	CTTAAG	1 cut(s)	1582
AflIII	ACRYGT	1 cut(s)	994
AgsI	TTSAA	4 cut(s)	612, 895, 1251, 1261
AjiI	CACGTC	2 cut(s)	15, 995
AjnI	CCWGG	3 cut(s)	878, 1274, 1962
AjuI	GAANNNNNNNTTGG	2 cut(s)	1332, 1364
AloI	GAACNNNNNNTCC	4 cut(s)	173, 205, 1089, 1121
Alw21I	GWGCWC	1 cut(s)	33
Alw26I	GTCTC	1 cut(s)	125
AlwI	GGATC	2 cut(s)	12, 1602
AlwNI	CAGNNNCTG	1 cut(s)	1899
AoxI	GGCC	3 cut(s)	75, 231, 241
ApeKI	GCWGC	8 cut(s)	404, 677, 965, 1181, 1414, 1871, 1893, 2017
ApoI	RAATTY	5 cut(s)	125, 895, 1367, 1559, 1996
ArsI	GACNNNNNNTTYG	4 cut(s)	173, 205, 1988, 2020
AseI	ATTAAT	1 cut(s)	633
AspLEI	GCGC	1 cut(s)	492
AspS9I	GGNCC	5 cut(s)	157, 729, 1097, 1794, 1967
AsuC2I	CCSGG	2 cut(s)	245, 727
AsuHPI	GGTGA	5 cut(s)	22, 589, 1181, 1376, 1520
AsuII	TTCGAA	1 cut(s)	123
AvaII	GGWCC	5 cut(s)	157, 729, 1097, 1794, 1967
BaeGI	GKGCMC	1 cut(s)	567
BanI	GGYRCC	1 cut(s)	464
BbsI	GAAGAC	2 cut(s)	1340, 1998
Bbv12I	GWGCWC	1 cut(s)	33
BbvCI	CCTCAGC	1 cut(s)	509
BbvI	GCAGC	7 cut(s)	391, 689, 977, 1168, 1426, 1858, 1905
BccI	CCATC	6 cut(s)	48, 501, 764, 1244, 1531, 1561
BceAI	ACGGC	4 cut(s)	90, 256, 583, 1290
BcgI	CGANNNNNNTGC	2 cut(s)	124, 158
BciT130I	CCWGG	3 cut(s)	880, 1276, 1964
BclI	TGATCA	1 cut(s)	415
BcnI	CCSGG	2 cut(s)	245, 727
BcoDI	GTCTC	1 cut(s)	125
BfaI	CTAG	1 cut(s)	2023
BfmI	CTRYAG	5 cut(s)	699, 915, 1002, 1900, 1971
BfoI	RGCGCY	1 cut(s)	493
BfrI	CTTAAG	1 cut(s)	1582
BfuAI	ACCTGC	2 cut(s)	1408, 1765
BmcAI	AGTACT	1 cut(s)	1658
Bme1390I	CCNGG	5 cut(s)	245, 727, 880, 1276, 1964
Bme18I	GGWCC	5 cut(s)	157, 729, 1097, 1794, 1967
BmgBI	CACGTC	2 cut(s)	15, 995
BmgT120I	GGNCC	5 cut(s)	157, 729, 1097, 1794, 1967
BmiI	GGNNCC	4 cut(s)	466, 730, 978, 1968
BmrFI	CCNGG	5 cut(s)	245, 727, 880, 1276, 1964
BmsI	GCATC	6 cut(s)	132, 1401, 1561, 1816, 1945, 1956
BpiI	GAAGAC	2 cut(s)	1340, 1998
BpmI	CTGGAG	2 cut(s)	191, 639
Bpu10I	CCTNAGC	1 cut(s)	509
Bpu14I	TTCGAA	1 cut(s)	123
BpuMI	CCSGG	2 cut(s)	245, 727
Bsa29I	ATCGAT	1 cut(s)	1737
BsaHI	GRCGYC	1 cut(s)	741
BsaJI	CCNNGG	4 cut(s)	878, 879, 1929, 1963
BsaWI	WCCGGW	1 cut(s)	1099
BsaXI	ACNNNNNCTCC	4 cut(s)	38, 68, 612, 642
Bsc4I	CCNNNNNNNGG	7 cut(s)	88, 89, 169, 277, 765, 766, 1320
Bse118I	RCCGGY	2 cut(s)	233, 1137
Bse1I	ACTGG	4 cut(s)	188, 622, 1011, 1988
Bse3DI	GCAATG	1 cut(s)	555
BseBI	CCWGG	3 cut(s)	880, 1276, 1964
BseCI	ATCGAT	1 cut(s)	1737
BseDI	CCNNGG	4 cut(s)	878, 879, 1929, 1963
BseGI	GGATG	6 cut(s)	775, 795, 1236, 1576, 1831, 1947
BseLI	CCNNNNNNNGG	7 cut(s)	88, 89, 169, 277, 765, 766, 1320
BseMI	GCAATG	1 cut(s)	555
BseMII	CTCAG	9 cut(s)	500, 510, 546, 668, 923, 1212, 1469, 1661, 1722
BseNI	ACTGG	4 cut(s)	188, 622, 1011, 1988
BseRI	GAGGAG	2 cut(s)	43, 188
BseSI	GKGCMC	1 cut(s)	567
BseX3I	CGGCCG	1 cut(s)	241
BseXI	GCAGC	7 cut(s)	391, 689, 977, 1168, 1426, 1858, 1905
BsgI	GTGCAG	1 cut(s)	1397
Bsh1236I	CGCG	1 cut(s)	330
Bsh1285I	CGRYCG	1 cut(s)	244
BshFI	GGCC	3 cut(s)	77, 233, 243
BshNI	GGYRCC	1 cut(s)	464
BshVI	ATCGAT	1 cut(s)	1737
BsiEI	CGRYCG	1 cut(s)	244
BsiHKAI	GWGCWC	1 cut(s)	33
BsiSI	CCGG	7 cut(s)	104, 234, 244, 260, 726, 1100, 1138
BslFI	GGGAC	4 cut(s)	194, 527, 742, 1409
BslI	CCNNNNNNNGG	7 cut(s)	88, 89, 169, 277, 765, 766, 1320
BsmAI	GTCTC	1 cut(s)	125
BsmBI	CGTCTC	1 cut(s)	125
BsmFI	GGGAC	4 cut(s)	194, 527, 742, 1409
BsmI	GAATGC	3 cut(s)	968, 1256, 1832
BsnI	GGCC	3 cut(s)	77, 233, 243
Bsp119I	TTCGAA	1 cut(s)	123
Bsp1286I	GDGCHC	2 cut(s)	33, 567
Bsp143I	GATC	9 cut(s)	4, 325, 415, 435, 762, 952, 1200, 1594, 1711
BspANI	GGCC	3 cut(s)	77, 233, 243
BspCNI	CTCAG	9 cut(s)	501, 511, 547, 667, 924, 1213, 1468, 1662, 1721
BspDI	ATCGAT	1 cut(s)	1737
BspFNI	CGCG	1 cut(s)	330
BspHI	TCATGA	1 cut(s)	496
BspLI	GGNNCC	4 cut(s)	466, 730, 978, 1968
BspMAI	CTGCAG	2 cut(s)	919, 1904
BspMI	ACCTGC	2 cut(s)	1408, 1765
BspPI	GGATC	2 cut(s)	12, 1602
BspQI	GCTCTTC	1 cut(s)	1693
BspT104I	TTCGAA	1 cut(s)	123
BspT107I	GGYRCC	1 cut(s)	464
BspTI	CTTAAG	1 cut(s)	1582
BsrBI	CCGCTC	5 cut(s)	51, 68, 118, 178, 1591
BsrDI	GCAATG	1 cut(s)	555
BsrFI	RCCGGY	2 cut(s)	233, 1137
BsrI	ACTGG	4 cut(s)	188, 622, 1011, 1988
BssAI	RCCGGY	2 cut(s)	233, 1137
BssECI	CCNNGG	4 cut(s)	878, 879, 1929, 1963
BssMI	GATC	9 cut(s)	4, 325, 415, 435, 762, 952, 1200, 1594, 1711
BssNI	GRCGYC	1 cut(s)	741
BssT1I	CCWWGG	1 cut(s)	1929
Bst2UI	CCWGG	3 cut(s)	880, 1276, 1964
Bst4CI	ACNGT	2 cut(s)	595, 1753
Bst6I	CTCTTC	5 cut(s)	1299, 1454, 1551, 1693, 1815
BstACI	GRCGYC	1 cut(s)	741
BstAFI	CTTAAG	1 cut(s)	1582
BstAPI	GCANNNNNTGC	4 cut(s)	1013, 1285, 1436, 1899
BstBI	TTCGAA	1 cut(s)	123
BstC8I	GCNNGC	4 cut(s)	212, 235, 1074, 1683
BstF5I	GGATG	6 cut(s)	775, 795, 1236, 1576, 1831, 1947
BstFNI	CGCG	1 cut(s)	330
BstH2I	RGCGCY	1 cut(s)	493
BstHHI	GCGC	1 cut(s)	492
BstKTI	GATC	9 cut(s)	7, 328, 418, 438, 765, 955, 1203, 1597, 1714
BstMAI	GTCTC	1 cut(s)	125
BstMBI	GATC	9 cut(s)	4, 325, 415, 435, 762, 952, 1200, 1594, 1711
BstMCI	CGRYCG	1 cut(s)	244
BstNI	CCWGG	3 cut(s)	880, 1276, 1964
BstNSI	RCATGY	1 cut(s)	1288
BstSCI	CCNGG	5 cut(s)	243, 725, 878, 1274, 1962
BstSFI	CTRYAG	5 cut(s)	699, 915, 1002, 1900, 1971
BstSLI	GKGCMC	1 cut(s)	567
BstUI	CGCG	1 cut(s)	330
BstV1I	GCAGC	7 cut(s)	391, 689, 977, 1168, 1426, 1858, 1905
BstV2I	GAAGAC	2 cut(s)	1340, 1998
BstX2I	RGATCY	1 cut(s)	1594
BstYI	RGATCY	1 cut(s)	1594
BstZI	CGGCCG	1 cut(s)	241
Bsu15I	ATCGAT	1 cut(s)	1737
BsuRI	GGCC	3 cut(s)	77, 233, 243
BsuTUI	ATCGAT	1 cut(s)	1737
BtrI	CACGTC	2 cut(s)	15, 995
BtsCI	GGATG	6 cut(s)	775, 795, 1236, 1576, 1831, 1947
BtsIMutI	CAGTG	3 cut(s)	516, 1018, 1766
BveI	ACCTGC	2 cut(s)	1408, 1765
Cac8I	GCNNGC	4 cut(s)	212, 235, 1074, 1683
CaiI	CAGNNNCTG	1 cut(s)	1899
CciI	TCATGA	1 cut(s)	496
CfoI	GCGC	1 cut(s)	492
Cfr10I	RCCGGY	2 cut(s)	233, 1137
Cfr13I	GGNCC	5 cut(s)	157, 729, 1097, 1794, 1967
ClaI	ATCGAT	1 cut(s)	1737
CseI	GACGC	2 cut(s)	730, 1980
Csp6I	GTAC	4 cut(s)	1057, 1657, 1754, 1849
CviAII	CATG	8 cut(s)	277, 497, 686, 746, 1241, 1285, 1919, 2001
CviQI	GTAC	4 cut(s)	1057, 1657, 1754, 1849
DpnI	GATC	9 cut(s)	6, 327, 417, 437, 764, 954, 1202, 1596, 1713
DpnII	GATC	9 cut(s)	4, 325, 415, 435, 762, 952, 1200, 1594, 1711
DraI	TTTAAA	2 cut(s)	831, 1477
DrdI	GACNNNNNNGTC	1 cut(s)	1222
DseDI	GACNNNNNNGTC	1 cut(s)	1222
EaeI	YGGCCR	2 cut(s)	75, 241
EagI	CGGCCG	1 cut(s)	241
Eam1104I	CTCTTC	5 cut(s)	1299, 1454, 1551, 1693, 1815
EarI	CTCTTC	5 cut(s)	1299, 1454, 1551, 1693, 1815
EciI	GGCGGA	1 cut(s)	46
EclXI	CGGCCG	1 cut(s)	241
Eco130I	CCWWGG	1 cut(s)	1929
Eco47I	GGWCC	5 cut(s)	157, 729, 1097, 1794, 1967
Eco52I	CGGCCG	1 cut(s)	241
Eco57I	CTGAAG	4 cut(s)	1280, 1352, 1532, 1790
EcoO109I	RGGNCCY	2 cut(s)	1794, 1967
EcoRI	GAATTC	2 cut(s)	125, 895
EcoRII	CCWGG	3 cut(s)	878, 1274, 1962
EcoT14I	CCWWGG	1 cut(s)	1929
EcoT22I	ATGCAT	3 cut(s)	751, 1576, 1807
ErhI	CCWWGG	1 cut(s)	1929
Esp3I	CGTCTC	1 cut(s)	125
FaeI	CATG	8 cut(s)	280, 500, 689, 749, 1244, 1288, 1922, 2004
FalI	AAGNNNNNCTT	8 cut(s)	527, 559, 1045, 1077, 1060, 1092, 1763, 1795
FaqI	GGGAC	4 cut(s)	194, 527, 742, 1409
FatI	CATG	8 cut(s)	276, 496, 685, 745, 1240, 1284, 1918, 2000
FauI	CCCGC	4 cut(s)	171, 323, 1065, 1584
FauNDI	CATATG	2 cut(s)	1165, 1497
FbaI	TGATCA	1 cut(s)	415
FblI	GTMKAC	1 cut(s)	1382
FokI	GGATG	6 cut(s)	782, 782, 1223, 1583, 1838, 1934
FspBI	CTAG	1 cut(s)	2023
GlaI	GCGC	1 cut(s)	491
GsuI	CTGGAG	2 cut(s)	191, 639
HaeII	RGCGCY	1 cut(s)	493
HaeIII	GGCC	3 cut(s)	77, 233, 243
HapII	CCGG	7 cut(s)	104, 234, 244, 260, 726, 1100, 1138
HgaI	GACGC	2 cut(s)	730, 1980
HhaI	GCGC	1 cut(s)	492
Hin1I	GRCGYC	1 cut(s)	741
Hin1II	CATG	8 cut(s)	280, 500, 689, 749, 1244, 1288, 1922, 2004
Hin6I	GCGC	1 cut(s)	490
HinP1I	GCGC	1 cut(s)	490
HindIII	AAGCTT	2 cut(s)	149, 1479
HinfI	GANTC	8 cut(s)	585, 608, 647, 873, 960, 1216, 1223, 1603
HpaII	CCGG	7 cut(s)	104, 234, 244, 260, 726, 1100, 1138
HphI	GGTGA	5 cut(s)	22, 589, 1181, 1376, 1520
Hpy166II	GTNNAC	3 cut(s)	1383, 1469, 1766
Hpy188III	TCNNGA	9 cut(s)	34, 130, 155, 170, 433, 497, 990, 1220, 1298
Hpy8I	GTNNAC	3 cut(s)	1383, 1469, 1766
Hpy99I	CGWCG	1 cut(s)	242
HpyAV	CCTTC	4 cut(s)	130, 220, 914, 1741
HpyCH4III	ACNGT	2 cut(s)	595, 1753
HpyCH4IV	ACGT	3 cut(s)	14, 994, 1787
HpySE526I	ACGT	3 cut(s)	14, 994, 1787
Hsp92I	GRCGYC	1 cut(s)	741
Hsp92II	CATG	8 cut(s)	280, 500, 689, 749, 1244, 1288, 1922, 2004
HspAI	GCGC	1 cut(s)	490
KroI	GCCGGC	1 cut(s)	233
KroNI	GCCGGC	1 cut(s)	235
Ksp22I	TGATCA	1 cut(s)	415
Kzo9I	GATC	9 cut(s)	4, 325, 415, 435, 762, 952, 1200, 1594, 1711
LguI	GCTCTTC	1 cut(s)	1693
LmnI	GCTCC	5 cut(s)	56, 106, 115, 175, 982
Lsp1109I	GCAGC	7 cut(s)	391, 689, 977, 1168, 1426, 1858, 1905
LweI	GCATC	6 cut(s)	132, 1401, 1561, 1816, 1945, 1956
MaeI	CTAG	1 cut(s)	2023
MaeII	ACGT	3 cut(s)	14, 994, 1787
MaeIII	GTNAC	5 cut(s)	10, 595, 997, 1084, 1623
MalI	GATC	9 cut(s)	6, 327, 417, 437, 764, 954, 1202, 1596, 1713
MbiI	CCGCTC	5 cut(s)	51, 68, 118, 178, 1591
MboI	GATC	9 cut(s)	4, 325, 415, 435, 762, 952, 1200, 1594, 1711
MboII	GAAGA	9 cut(s)	1286, 1345, 1471, 1538, 1658, 1710, 1783, 1832, 1998
MfeI	CAATTG	1 cut(s)	1044
MflI	RGATCY	1 cut(s)	1594
MhlI	GDGCHC	2 cut(s)	33, 567
MluCI	AATT	9 cut(s)	125, 523, 822, 895, 1017, 1044, 1367, 1559, 1996
MlyI	GAGTC	2 cut(s)	1210, 1232
Mph1103I	ATGCAT	3 cut(s)	751, 1576, 1807
MroNI	GCCGGC	1 cut(s)	233
MseI	TTAA	6 cut(s)	219, 633, 830, 1476, 1583, 1980
MslI	CAYNNNNRTG	1 cut(s)	1856
MspCI	CTTAAG	1 cut(s)	1582
MspI	CCGG	7 cut(s)	104, 234, 244, 260, 726, 1100, 1138
MspR9I	CCNGG	5 cut(s)	245, 727, 880, 1276, 1964
MunI	CAATTG	1 cut(s)	1044
Mva1269I	GAATGC	3 cut(s)	968, 1256, 1832
MvaI	CCWGG	3 cut(s)	880, 1276, 1964
MvnI	CGCG	1 cut(s)	330
NaeI	GCCGGC	1 cut(s)	235
NciI	CCSGG	2 cut(s)	245, 727
NdeI	CATATG	2 cut(s)	1165, 1497
NdeII	GATC	9 cut(s)	4, 325, 415, 435, 762, 952, 1200, 1594, 1711
NgoMIV	GCCGGC	1 cut(s)	233
NlaIII	CATG	8 cut(s)	280, 500, 689, 749, 1244, 1288, 1922, 2004
NlaIV	GGNNCC	4 cut(s)	466, 730, 978, 1968
NmuCI	GTSAC	3 cut(s)	10, 595, 1623
NsiI	ATGCAT	3 cut(s)	751, 1576, 1807
NspI	RCATGY	1 cut(s)	1288
NspV	TTCGAA	1 cut(s)	123
PagI	TCATGA	1 cut(s)	496
PasI	CCCWGGG	1 cut(s)	879
PciSI	GCTCTTC	1 cut(s)	1693
PcsI	WCGNNNNNNNCGW	1 cut(s)	80
PctI	GAATGC	3 cut(s)	968, 1256, 1832
PdiI	GCCGGC	1 cut(s)	235
PfeI	GAWTC	6 cut(s)	585, 608, 647, 873, 960, 1603
PflFI	GACNNNGTC	1 cut(s)	866
PflMI	CCANNNNNTGG	2 cut(s)	169, 277
PfoI	TCCNGGA	1 cut(s)	725
PleI	GAGTC	2 cut(s)	1210, 1231
PpsI	GAGTC	2 cut(s)	1210, 1231
PpuMI	RGGWCCY	2 cut(s)	1794, 1967
PshBI	ATTAAT	1 cut(s)	633
PsiI	TTATAA	1 cut(s)	1448
Psp5II	RGGWCCY	2 cut(s)	1794, 1967
Psp6I	CCWGG	3 cut(s)	878, 1274, 1962
PspGI	CCWGG	3 cut(s)	878, 1274, 1962
PspN4I	GGNNCC	4 cut(s)	466, 730, 978, 1968
PspPI	GGNCC	5 cut(s)	157, 729, 1097, 1794, 1967
PspPPI	RGGWCCY	2 cut(s)	1794, 1967
PstI	CTGCAG	2 cut(s)	919, 1904
PstNI	CAGNNNCTG	1 cut(s)	1899
PsuI	RGATCY	1 cut(s)	1594
PsyI	GACNNNGTC	1 cut(s)	866
RsaI	GTAC	4 cut(s)	1058, 1658, 1755, 1850
RsaNI	GTAC	4 cut(s)	1057, 1657, 1754, 1849
RseI	CAYNNNNRTG	1 cut(s)	1856
SapI	GCTCTTC	1 cut(s)	1693
SaqAI	TTAA	6 cut(s)	219, 633, 830, 1476, 1583, 1980
Sau3AI	GATC	9 cut(s)	4, 325, 415, 435, 762, 952, 1200, 1594, 1711
Sau96I	GGNCC	5 cut(s)	157, 729, 1097, 1794, 1967
ScaI	AGTACT	1 cut(s)	1658
SchI	GAGTC	2 cut(s)	1210, 1232
ScrFI	CCNGG	5 cut(s)	245, 727, 880, 1276, 1964
SduI	GDGCHC	2 cut(s)	33, 567
SfaNI	GCATC	6 cut(s)	132, 1401, 1561, 1816, 1945, 1956
SfcI	CTRYAG	5 cut(s)	699, 915, 1002, 1900, 1971
SfuI	TTCGAA	1 cut(s)	123
SinI	GGWCC	5 cut(s)	157, 729, 1097, 1794, 1967
SmiMI	CAYNNNNRTG	1 cut(s)	1856
SmlI	CTYRAG	1 cut(s)	1582
SmoI	CTYRAG	1 cut(s)	1582
Sse9I	AATT	9 cut(s)	125, 523, 822, 895, 1017, 1044, 1367, 1559, 1996
SspI	AATATT	1 cut(s)	1722
SspMI	CTAG	1 cut(s)	2023
StyD4I	CCNGG	5 cut(s)	243, 725, 878, 1274, 1962
StyI	CCWWGG	1 cut(s)	1929
TaaI	ACNGT	2 cut(s)	595, 1753
TaiI	ACGT	3 cut(s)	17, 997, 1790
TaqI	TCGA	9 cut(s)	35, 123, 129, 580, 588, 850, 1557, 1714, 1737
TasI	AATT	9 cut(s)	125, 523, 822, 895, 1017, 1044, 1367, 1559, 1996
TatI	WGTACW	1 cut(s)	1656
TauI	GCSGC	2 cut(s)	103, 1832
TfiI	GAWTC	6 cut(s)	585, 608, 647, 873, 960, 1603
Tru1I	TTAA	6 cut(s)	219, 633, 830, 1476, 1583, 1980
Tru9I	TTAA	6 cut(s)	219, 633, 830, 1476, 1583, 1980
TscAI	CASTG	3 cut(s)	523, 1018, 1773
TseFI	GTSAC	3 cut(s)	10, 595, 1623
TseI	GCWGC	8 cut(s)	404, 677, 965, 1181, 1414, 1871, 1893, 2017
Tsp45I	GTSAC	3 cut(s)	10, 595, 1623
TspDTI	ATGAA	4 cut(s)	317, 1514, 1723, 1989
TspGWI	ACGGA	3 cut(s)	128, 788, 1999
TspRI	CASTG	3 cut(s)	523, 1018, 1773
Tth111I	GACNNNGTC	1 cut(s)	866
Van91I	CCANNNNNTGG	2 cut(s)	169, 277
Vha464I	CTTAAG	1 cut(s)	1582
VpaK11BI	GGWCC	5 cut(s)	157, 729, 1097, 1794, 1967
VspI	ATTAAT	1 cut(s)	633
XapI	RAATTY	5 cut(s)	125, 895, 1367, 1559, 1996
XceI	RCATGY	1 cut(s)	1288
XcmI	CCANNNNNNNNNTGG	2 cut(s)	85, 767
XmiI	GTMKAC	1 cut(s)	1382
XspI	CTAG	1 cut(s)	2023
ZrmI	AGTACT	1 cut(s)	1658
Zsp2I	ATGCAT	3 cut(s)	751, 1576, 1807

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.