Basic Information

Type: gene

Biological Identity

Species

rosa_roxburghii

Chromosome

GWHEROQ00000002

Orthogroup ID

OG0011873

Physical Location & Seq

Genomic Coordinates Forward (+)

42471414 .. 42476812

Gene Structure 5399 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rroxscaffold_2G00115900.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1917 bp

ATGGATCGGGTGACGTGGCGAACCCAAGTGCTCTCGAACCACCTCCACCGCTCCTCCGCCTCGTCCGCTCTGACGGCCAACCCGTGCGTGGGGTTTTCGCCGCCGGAGCTGACGGAGCGGTTCGAATTCGAGACGAAGGAGATGCGGAAGCTTCTGGACCACCACAATCTGGAGGAGCGGGACTGGCTGTTCGGGCTGATGAGGCAGAGTAAGCTGTTTAATCCGAAGGAGGCCGGCGACGGCAGGCTGTTTGTGTCGCCGGACTATAACCAGAGCATGGAGCAGCAGAGGGAGATGACGATGAAGCGGATTGACTACTTGTTGGATCGCGGGGTTTTCAGAGGTTGGCTAACGGAGAAAGGGGTTGAGGTTGAGTTGAGGAAGTTTGCGTTGCAAGAAGTTGCTGCGATTTATGATCATTCGCTCTCTGTCAAGATCGGTGTGCATTTCTTTCTATGGGGTGGTGCCATTCTGTTCTTTGGCACAAAGCGCCATCACGACAAGTGGCTGAGGGACACTGAGAATTATGCAATCAAGGGTTGCTTTGCAATGTCTGAGTTAGGGCACGGCAGTAATGTTCGAGGAATCGAAACAGTCACCACTTACGATTCAAAAACTGGAGAGTTTGTCATTAATACTCCTTGTGAATCTGCTCAGAAGTATTGGATTGGAGGGGCAGCTAATCATGCCACACACACTATAGTCTTTTCACAACTCATCATATCCGGGACCAATCAAGGCGTCCATGCATTTATAGCCCAGATCAGGGATGGAAATGGGAACATCTGTCCAAACATCCGTATTGCTGATTGTGGTCATAAAATTGGTTTAAATGGTGTTGATAATGGTCGAATATGGTTTGACAATGTCCGAATCCCCAGGGAAAATTTGTTGAATTCAGTAGCAGATGTTTCCGCAGAAGGGCAATATCTGAGTGCAATAAAAGACCCAGATCAGAGATTCGCAGCGTTCTTGGCTCCATTGACATCTGGACGTGTAACTATAGCAACCAGTGCAATTTATACAGCAAAGATAAGTTTAGCAATTGCCATAAGATATGCTATGACTTTTGCTGCAAATCACCTAAAGATGATCTATGTTAGGAGGACTCCTGAGTCGAGCAAAACCATCCATGTTGTTTCAAGTGCATTCAAGGCTACACTTACCTGGCATAACATGCGAACTCTTCAGGAGTGCCGTGAAGCCTGTGGAGGGCAAGGTCTGAAGACTGAAAACCGCATTGGTAATCTGAAAGGTGAATTTGATGTGCAGTCTACTTTTGAGGGGGACAATAATGTTCTGATGCAGCAGGTCAGCAAGGCACTTCTTGCAGAGTTTATAACAGCTCAGAAGAGAAGTAAACCATTTAAAGCTTTGGGATTAGAACATATGAATAAACCTTGCCCTGTCATTCCATCTCACCTTACAAGTTCTACTCTTCAGAGTATTGAATTTCAGTTGGATGCATTTTGCTTAAGAGAGCGGGATCTACTGAATCGCTTTGCTGTGGAAGTGTCACAACGACAAAAACAGGGAGAAAGCAAAGAGTACTCGGTTCTTCTGAGTTATCAGCTTGCAGATGATTTGGGAAGAGCTTTCTCAGATCGAACAATATTGCAAACCTTCATTGATGTAGAGGCAACTGTACCTGCTGGTTCACTGAAGAATGTCTTAGCTACGTTGAGGACCTTGTATGCATTGATTTGCTTGGAAGAGGATGTGGCATTCCTCCGATACGGGTACTTATCAACGGATAATGTTGCTGCCGTGAGGAAAGAAGTAAGCAGCCTCTGCAGAGAGCTACGACCCCATGCACTTGCCTTGGTCAGTTCTTTTGGCATCCCTGATGCTTTCCTCAGTCCTATAGCTTTTAACTGGATCGAGTCAAATTCATGGTCTTCAGTTCAGCAGAACTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000166 GO:0003674 GO:0003824 GO:0003995 GO:0003997 GO:0005488 GO:0006082 GO:0006629 GO:0006631 GO:0006635 GO:0008150 GO:0008152 GO:0009056 GO:0009062 GO:0009987 GO:0016042 GO:0016054 GO:0016491 GO:0016627 GO:0016634 GO:0019395 GO:0019752 GO:0030258 GO:0032787 GO:0033539 GO:0034440 GO:0036094 GO:0043167 GO:0043168 GO:0043436 GO:0044237 GO:0044238 GO:0044242 GO:0044248 GO:0044255 GO:0044281 GO:0044282 GO:0046395 GO:0048037 GO:0050660 GO:0050662 GO:0051791 GO:0055114 GO:0071704 GO:0072329 GO:0097159 GO:1901265 GO:1901363 GO:1901575

KEGG Pathways

Metabolic & Signaling

ko00071 ko00592 ko01040 ko01100 ko01110 ko01212 ko03320 ko04024 ko04146 map00071 map00592 map01040 map01100 map01110 map01212 map03320 map04024 map04146

Pfam Domains

Protein Families

ACOX Acyl-CoA_dh_1 Acyl-CoA_dh_M

Protein Analysis

638

Amino Acids

71.67

Weight (kDa)

7.95

Isoelectric Point (pI)

37.91

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Acyl-CoA_dh_M	PF02770	181 - 290	2.5e-11	Acyl-CoA dehydrogenase, middle domain
ACOX_C_alpha1	PF22924	372 - 443	1.4e-18	Acyl-CoA oxidase, C-alpha1 domain
ACOX	PF01756	484 - 619	1.8e-19	Acyl-CoA oxidase

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0011873)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G06290 AT1G06310 AT3G06690
fragaria_vesca	FvH4_6g26900 FvH4_6g26900 FvH4_6g26900
malus_domestica	MD17G1234100.v1.1
prunus_persica	Prupe.3G127000_v2.0.a1
pyrus_communis	pycom17g23740
rosa_chinensis	RchiOBHm_Chr2g0128641
rosa_laevigata	RLG00000019014
rosa_multiflora	Rmu_sc0000837.1_g000086 Rmu_sc0003465.1_g000047
rosa_roxburghii	Rroxscaffold_2G00115420 Rroxscaffold_2G00115900
rosa_rugosa	Rorug02G0279600
rosa_samantha	Rh2DG357400
rosa_wichuraiana	Rw2G026890 Rw2G027150

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	1340
AasI	GACNNNNNNGTC	1 cut(s)	1114
Acc36I	ACCTGC	2 cut(s)	1300, 1657
AccB1I	GGYRCC	1 cut(s)	464
AccB7I	CCANNNNNTGG	2 cut(s)	169, 277
AccBSI	CCGCTC	5 cut(s)	51, 68, 118, 178, 1483
AccI	GTMKAC	1 cut(s)	1274
AccII	CGCG	1 cut(s)	330
AclWI	GGATC	4 cut(s)	12, 333, 1494, 1886
AcoI	YGGCCR	1 cut(s)	75
AcsI	RAATTY	6 cut(s)	125, 886, 895, 1259, 1451, 1888
AcuI	CTGAAG	5 cut(s)	1172, 1244, 1424, 1682, 1884
AcyI	GRCGYC	1 cut(s)	741
AfaI	GTAC	3 cut(s)	1550, 1647, 1742
AfiI	CCNNNNNNNGG	8 cut(s)	88, 89, 169, 277, 765, 766, 921, 1212
AflII	CTTAAG	1 cut(s)	1474
AflIII	ACRYGT	1 cut(s)	994
AgsI	TTSAA	5 cut(s)	612, 895, 1143, 1153, 1451
AjiI	CACGTC	2 cut(s)	15, 995
AjnI	CCWGG	2 cut(s)	878, 1166
AjuI	GAANNNNNNNTTGG	2 cut(s)	1224, 1256
AloI	GAACNNNNNNTCC	2 cut(s)	173, 205
Alw21I	GWGCWC	1 cut(s)	33
Alw26I	GTCTC	1 cut(s)	125
AlwI	GGATC	4 cut(s)	12, 333, 1494, 1886
AlwNI	CAGNNNCTG	1 cut(s)	1791
AoxI	GGCC	2 cut(s)	75, 231
ApeKI	GCWGC	8 cut(s)	283, 404, 677, 965, 1073, 1306, 1763, 1785
ApoI	RAATTY	6 cut(s)	125, 886, 895, 1259, 1451, 1888
ArsI	GACNNNNNNTTYG	4 cut(s)	173, 205, 1880, 1912
AseI	ATTAAT	1 cut(s)	633
AspLEI	GCGC	1 cut(s)	492
AspS9I	GGNCC	3 cut(s)	157, 729, 1686
AsuC2I	CCSGG	1 cut(s)	727
AsuHPI	GGTGA	5 cut(s)	22, 589, 1073, 1268, 1412
AsuII	TTCGAA	1 cut(s)	123
AvaII	GGWCC	3 cut(s)	157, 729, 1686
BaeGI	GKGCMC	1 cut(s)	567
BanI	GGYRCC	1 cut(s)	464
BbsI	GAAGAC	2 cut(s)	1232, 1890
Bbv12I	GWGCWC	1 cut(s)	33
BbvCI	CCTCAGC	1 cut(s)	509
BbvI	GCAGC	8 cut(s)	295, 391, 689, 977, 1060, 1318, 1750, 1797
BccI	CCATC	4 cut(s)	501, 764, 1136, 1423
BceAI	ACGGC	5 cut(s)	90, 256, 583, 1182, 1751
BcgI	CGANNNNNNTGC	2 cut(s)	124, 158
BciT130I	CCWGG	2 cut(s)	880, 1168
BclI	TGATCA	1 cut(s)	415
BcnI	CCSGG	1 cut(s)	727
BcoDI	GTCTC	1 cut(s)	125
BfaI	CTAG	1 cut(s)	1915
BfmI	CTRYAG	4 cut(s)	699, 1002, 1792, 1863
BfoI	RGCGCY	1 cut(s)	493
BfrI	CTTAAG	1 cut(s)	1474
BfuAI	ACCTGC	2 cut(s)	1300, 1657
BisI	GCNGC	9 cut(s)	101, 284, 405, 678, 966, 1074, 1307, 1764, 1786
BlsI	GCNGC	9 cut(s)	102, 285, 406, 679, 967, 1075, 1308, 1765, 1787
BmcAI	AGTACT	1 cut(s)	1550
Bme1390I	CCNGG	3 cut(s)	727, 880, 1168
Bme18I	GGWCC	3 cut(s)	157, 729, 1686
BmgBI	CACGTC	2 cut(s)	15, 995
BmgT120I	GGNCC	3 cut(s)	157, 729, 1686
BmiI	GGNNCC	3 cut(s)	466, 730, 978
BmrFI	CCNGG	3 cut(s)	727, 880, 1168
BmsI	GCATC	5 cut(s)	132, 1293, 1453, 1837, 1848
BpiI	GAAGAC	2 cut(s)	1232, 1890
BpmI	CTGGAG	2 cut(s)	191, 639
Bpu10I	CCTNAGC	1 cut(s)	509
Bpu14I	TTCGAA	1 cut(s)	123
BpuMI	CCSGG	1 cut(s)	727
BsaHI	GRCGYC	1 cut(s)	741
BsaJI	CCNNGG	3 cut(s)	878, 879, 1821
BsaXI	ACNNNNNCTCC	4 cut(s)	38, 68, 612, 642
Bsc4I	CCNNNNNNNGG	8 cut(s)	88, 89, 169, 277, 765, 766, 921, 1212
Bse118I	RCCGGY	1 cut(s)	233
Bse1I	ACTGG	4 cut(s)	188, 622, 1011, 1880
Bse3DI	GCAATG	1 cut(s)	555
BseBI	CCWGG	2 cut(s)	880, 1168
BseDI	CCNNGG	3 cut(s)	878, 879, 1821
BseGI	GGATG	6 cut(s)	775, 795, 1128, 1468, 1723, 1839
BseLI	CCNNNNNNNGG	8 cut(s)	88, 89, 169, 277, 765, 766, 921, 1212
BseMI	GCAATG	1 cut(s)	555
BseNI	ACTGG	4 cut(s)	188, 622, 1011, 1880
BseRI	GAGGAG	2 cut(s)	43, 188
BseSI	GKGCMC	1 cut(s)	567
BseXI	GCAGC	8 cut(s)	295, 391, 689, 977, 1060, 1318, 1750, 1797
BsgI	GTGCAG	1 cut(s)	1289
Bsh1236I	CGCG	1 cut(s)	330
BshFI	GGCC	2 cut(s)	77, 233
BshNI	GGYRCC	1 cut(s)	464
BsiHKAI	GWGCWC	1 cut(s)	33
BsiSI	CCGG	4 cut(s)	104, 234, 260, 726
BslFI	GGGAC	4 cut(s)	194, 527, 742, 1301
BslI	CCNNNNNNNGG	8 cut(s)	88, 89, 169, 277, 765, 766, 921, 1212
BsmAI	GTCTC	1 cut(s)	125
BsmBI	CGTCTC	1 cut(s)	125
BsmFI	GGGAC	4 cut(s)	194, 527, 742, 1301
BsmI	GAATGC	2 cut(s)	1148, 1724
BsnI	GGCC	2 cut(s)	77, 233
Bsp119I	TTCGAA	1 cut(s)	123
Bsp1286I	GDGCHC	2 cut(s)	33, 567
BspANI	GGCC	2 cut(s)	77, 233
BspFNI	CGCG	1 cut(s)	330
BspLI	GGNNCC	3 cut(s)	466, 730, 978
BspMAI	CTGCAG	1 cut(s)	1796
BspMI	ACCTGC	2 cut(s)	1300, 1657
BspPI	GGATC	4 cut(s)	12, 333, 1494, 1886
BspQI	GCTCTTC	1 cut(s)	1585
BspT104I	TTCGAA	1 cut(s)	123
BspT107I	GGYRCC	1 cut(s)	464
BspTI	CTTAAG	1 cut(s)	1474
BsrBI	CCGCTC	5 cut(s)	51, 68, 118, 178, 1483
BsrDI	GCAATG	1 cut(s)	555
BsrFI	RCCGGY	1 cut(s)	233
BsrI	ACTGG	4 cut(s)	188, 622, 1011, 1880
BssAI	RCCGGY	1 cut(s)	233
BssECI	CCNNGG	3 cut(s)	878, 879, 1821
BssNI	GRCGYC	1 cut(s)	741
BssT1I	CCWWGG	1 cut(s)	1821
Bst2UI	CCWGG	2 cut(s)	880, 1168
Bst4CI	ACNGT	2 cut(s)	595, 1645
Bst6I	CTCTTC	5 cut(s)	1191, 1346, 1443, 1585, 1707
BstACI	GRCGYC	1 cut(s)	741
BstAFI	CTTAAG	1 cut(s)	1474
BstAPI	GCANNNNNTGC	4 cut(s)	1013, 1177, 1328, 1791
BstBI	TTCGAA	1 cut(s)	123
BstC8I	GCNNGC	3 cut(s)	235, 245, 1575
BstF5I	GGATG	6 cut(s)	775, 795, 1128, 1468, 1723, 1839
BstFNI	CGCG	1 cut(s)	330
BstH2I	RGCGCY	1 cut(s)	493
BstHHI	GCGC	1 cut(s)	492
BstMAI	GTCTC	1 cut(s)	125
BstNI	CCWGG	2 cut(s)	880, 1168
BstNSI	RCATGY	1 cut(s)	1180
BstSCI	CCNGG	3 cut(s)	725, 878, 1166
BstSFI	CTRYAG	4 cut(s)	699, 1002, 1792, 1863
BstSLI	GKGCMC	1 cut(s)	567
BstUI	CGCG	1 cut(s)	330
BstV1I	GCAGC	8 cut(s)	295, 391, 689, 977, 1060, 1318, 1750, 1797
BstV2I	GAAGAC	2 cut(s)	1232, 1890
BstX2I	RGATCY	1 cut(s)	1486
BstYI	RGATCY	1 cut(s)	1486
BsuRI	GGCC	2 cut(s)	77, 233
BtrI	CACGTC	2 cut(s)	15, 995
BtsCI	GGATG	6 cut(s)	775, 795, 1128, 1468, 1723, 1839
BtsIMutI	CAGTG	3 cut(s)	516, 1018, 1658
BveI	ACCTGC	2 cut(s)	1300, 1657
Cac8I	GCNNGC	3 cut(s)	235, 245, 1575
CaiI	CAGNNNCTG	1 cut(s)	1791
CfoI	GCGC	1 cut(s)	492
Cfr10I	RCCGGY	1 cut(s)	233
Cfr13I	GGNCC	3 cut(s)	157, 729, 1686
CseI	GACGC	1 cut(s)	730
Csp6I	GTAC	3 cut(s)	1549, 1646, 1741
CviAII	CATG	7 cut(s)	277, 686, 746, 1133, 1177, 1811, 1893
CviQI	GTAC	3 cut(s)	1549, 1646, 1741
DraI	TTTAAA	2 cut(s)	831, 1369
DrdI	GACNNNNNNGTC	1 cut(s)	1114
DseDI	GACNNNNNNGTC	1 cut(s)	1114
EaeI	YGGCCR	1 cut(s)	75
Eam1104I	CTCTTC	5 cut(s)	1191, 1346, 1443, 1585, 1707
EarI	CTCTTC	5 cut(s)	1191, 1346, 1443, 1585, 1707
EciI	GGCGGA	1 cut(s)	46
Eco130I	CCWWGG	1 cut(s)	1821
Eco47I	GGWCC	3 cut(s)	157, 729, 1686
Eco57I	CTGAAG	5 cut(s)	1172, 1244, 1424, 1682, 1884
EcoO109I	RGGNCCY	1 cut(s)	1686
EcoRI	GAATTC	2 cut(s)	125, 895
EcoRII	CCWGG	2 cut(s)	878, 1166
EcoT14I	CCWWGG	1 cut(s)	1821
EcoT22I	ATGCAT	3 cut(s)	751, 1468, 1699
ErhI	CCWWGG	1 cut(s)	1821
Esp3I	CGTCTC	1 cut(s)	125
FaeI	CATG	7 cut(s)	280, 689, 749, 1136, 1180, 1814, 1896
FalI	AAGNNNNNCTT	4 cut(s)	527, 559, 1655, 1687
FaqI	GGGAC	4 cut(s)	194, 527, 742, 1301
FatI	CATG	7 cut(s)	276, 685, 745, 1132, 1176, 1810, 1892
FauI	CCCGC	3 cut(s)	171, 323, 1476
FauNDI	CATATG	1 cut(s)	1389
FbaI	TGATCA	1 cut(s)	415
FblI	GTMKAC	1 cut(s)	1274
Fnu4HI	GCNGC	9 cut(s)	101, 284, 405, 678, 966, 1074, 1307, 1764, 1786
FokI	GGATG	6 cut(s)	782, 782, 1115, 1475, 1730, 1826
Fsp4HI	GCNGC	9 cut(s)	101, 284, 405, 678, 966, 1074, 1307, 1764, 1786
FspBI	CTAG	1 cut(s)	1915
GlaI	GCGC	1 cut(s)	491
GluI	GCNGC	9 cut(s)	101, 284, 405, 678, 966, 1074, 1307, 1764, 1786
GsuI	CTGGAG	2 cut(s)	191, 639
HaeII	RGCGCY	1 cut(s)	493
HaeIII	GGCC	2 cut(s)	77, 233
HapII	CCGG	4 cut(s)	104, 234, 260, 726
HgaI	GACGC	1 cut(s)	730
HhaI	GCGC	1 cut(s)	492
Hin1I	GRCGYC	1 cut(s)	741
Hin1II	CATG	7 cut(s)	280, 689, 749, 1136, 1180, 1814, 1896
Hin6I	GCGC	1 cut(s)	490
HinP1I	GCGC	1 cut(s)	490
HindIII	AAGCTT	2 cut(s)	149, 1371
HinfI	GANTC	9 cut(s)	585, 608, 647, 873, 960, 1108, 1115, 1495, 1883
HpaII	CCGG	4 cut(s)	104, 234, 260, 726
HphI	GGTGA	5 cut(s)	22, 589, 1073, 1268, 1412
Hpy166II	GTNNAC	3 cut(s)	1275, 1361, 1658
Hpy188III	TCNNGA	9 cut(s)	34, 130, 155, 170, 433, 497, 990, 1112, 1190
Hpy8I	GTNNAC	3 cut(s)	1275, 1361, 1658
Hpy99I	CGWCG	1 cut(s)	242
HpyAV	CCTTC	4 cut(s)	130, 220, 914, 1633
HpyCH4III	ACNGT	2 cut(s)	595, 1645
HpyCH4IV	ACGT	3 cut(s)	14, 994, 1679
HpySE526I	ACGT	3 cut(s)	14, 994, 1679
Hsp92I	GRCGYC	1 cut(s)	741
Hsp92II	CATG	7 cut(s)	280, 689, 749, 1136, 1180, 1814, 1896
HspAI	GCGC	1 cut(s)	490
KroI	GCCGGC	1 cut(s)	233
KroNI	GCCGGC	1 cut(s)	235
Ksp22I	TGATCA	1 cut(s)	415
LguI	GCTCTTC	1 cut(s)	1585
LmnI	GCTCC	6 cut(s)	56, 106, 115, 175, 280, 982
Lsp1109I	GCAGC	8 cut(s)	295, 391, 689, 977, 1060, 1318, 1750, 1797
LweI	GCATC	5 cut(s)	132, 1293, 1453, 1837, 1848
MaeI	CTAG	1 cut(s)	1915
MaeII	ACGT	3 cut(s)	14, 994, 1679
MaeIII	GTNAC	4 cut(s)	10, 595, 997, 1515
MbiI	CCGCTC	5 cut(s)	51, 68, 118, 178, 1483
MboII	GAAGA	9 cut(s)	1178, 1237, 1363, 1430, 1550, 1602, 1675, 1724, 1890
MfeI	CAATTG	1 cut(s)	1044
MflI	RGATCY	1 cut(s)	1486
MhlI	GDGCHC	2 cut(s)	33, 567
MlyI	GAGTC	3 cut(s)	1102, 1124, 1892
MmeI	TCCRAC	2 cut(s)	303, 1440
Mph1103I	ATGCAT	3 cut(s)	751, 1468, 1699
MroNI	GCCGGC	1 cut(s)	233
MseI	TTAA	6 cut(s)	219, 633, 830, 1368, 1475, 1872
MspCI	CTTAAG	1 cut(s)	1474
MspI	CCGG	4 cut(s)	104, 234, 260, 726
MspR9I	CCNGG	3 cut(s)	727, 880, 1168
MunI	CAATTG	1 cut(s)	1044
Mva1269I	GAATGC	2 cut(s)	1148, 1724
MvaI	CCWGG	2 cut(s)	880, 1168
MvnI	CGCG	1 cut(s)	330
NaeI	GCCGGC	1 cut(s)	235
NciI	CCSGG	1 cut(s)	727
NdeI	CATATG	1 cut(s)	1389
NgoMIV	GCCGGC	1 cut(s)	233
NlaIII	CATG	7 cut(s)	280, 689, 749, 1136, 1180, 1814, 1896
NlaIV	GGNNCC	3 cut(s)	466, 730, 978
NmuCI	GTSAC	3 cut(s)	10, 595, 1515
NsiI	ATGCAT	3 cut(s)	751, 1468, 1699
NspI	RCATGY	1 cut(s)	1180
NspV	TTCGAA	1 cut(s)	123
PasI	CCCWGGG	1 cut(s)	879
PciSI	GCTCTTC	1 cut(s)	1585
PcsI	WCGNNNNNNNCGW	1 cut(s)	80
PctI	GAATGC	2 cut(s)	1148, 1724
PdiI	GCCGGC	1 cut(s)	235
PfeI	GAWTC	6 cut(s)	585, 608, 647, 873, 960, 1495
PflFI	GACNNNGTC	1 cut(s)	866
PflMI	CCANNNNNTGG	2 cut(s)	169, 277
PfoI	TCCNGGA	1 cut(s)	725
PkrI	GCNGC	9 cut(s)	102, 285, 406, 679, 967, 1075, 1308, 1765, 1787
PleI	GAGTC	3 cut(s)	1102, 1123, 1891
PpsI	GAGTC	3 cut(s)	1102, 1123, 1891
PpuMI	RGGWCCY	1 cut(s)	1686
PshBI	ATTAAT	1 cut(s)	633
PsiI	TTATAA	1 cut(s)	1340
Psp5II	RGGWCCY	1 cut(s)	1686
Psp6I	CCWGG	2 cut(s)	878, 1166
PspGI	CCWGG	2 cut(s)	878, 1166
PspN4I	GGNNCC	3 cut(s)	466, 730, 978
PspPI	GGNCC	3 cut(s)	157, 729, 1686
PspPPI	RGGWCCY	1 cut(s)	1686
PstI	CTGCAG	1 cut(s)	1796
PstNI	CAGNNNCTG	1 cut(s)	1791
PsuI	RGATCY	1 cut(s)	1486
PsyI	GACNNNGTC	1 cut(s)	866
RsaI	GTAC	3 cut(s)	1550, 1647, 1742
RsaNI	GTAC	3 cut(s)	1549, 1646, 1741
SapI	GCTCTTC	1 cut(s)	1585
SaqAI	TTAA	6 cut(s)	219, 633, 830, 1368, 1475, 1872
SatI	GCNGC	9 cut(s)	101, 284, 405, 678, 966, 1074, 1307, 1764, 1786
Sau96I	GGNCC	3 cut(s)	157, 729, 1686
ScaI	AGTACT	1 cut(s)	1550
SchI	GAGTC	3 cut(s)	1102, 1124, 1892
ScrFI	CCNGG	3 cut(s)	727, 880, 1168
SduI	GDGCHC	2 cut(s)	33, 567
SfaNI	GCATC	5 cut(s)	132, 1293, 1453, 1837, 1848
SfcI	CTRYAG	4 cut(s)	699, 1002, 1792, 1863
SfuI	TTCGAA	1 cut(s)	123
SinI	GGWCC	3 cut(s)	157, 729, 1686
SmlI	CTYRAG	1 cut(s)	1474
SmoI	CTYRAG	1 cut(s)	1474
SspI	AATATT	1 cut(s)	1614
SspMI	CTAG	1 cut(s)	1915
StyD4I	CCNGG	3 cut(s)	725, 878, 1166
StyI	CCWWGG	1 cut(s)	1821
TaaI	ACNGT	2 cut(s)	595, 1645
TaiI	ACGT	3 cut(s)	17, 997, 1682
TaqI	TCGA	9 cut(s)	35, 123, 129, 580, 588, 850, 1118, 1606, 1881
TatI	WGTACW	1 cut(s)	1548
TauI	GCSGC	1 cut(s)	103
TfiI	GAWTC	6 cut(s)	585, 608, 647, 873, 960, 1495
Tru1I	TTAA	6 cut(s)	219, 633, 830, 1368, 1475, 1872
Tru9I	TTAA	6 cut(s)	219, 633, 830, 1368, 1475, 1872
TscAI	CASTG	3 cut(s)	523, 1018, 1665
TseFI	GTSAC	3 cut(s)	10, 595, 1515
TseI	GCWGC	8 cut(s)	283, 404, 677, 965, 1073, 1306, 1763, 1785
Tsp45I	GTSAC	3 cut(s)	10, 595, 1515
TspDTI	ATGAA	4 cut(s)	317, 1406, 1615, 1881
TspGWI	ACGGA	4 cut(s)	128, 368, 788, 1766
TspRI	CASTG	3 cut(s)	523, 1018, 1665
Tth111I	GACNNNGTC	1 cut(s)	866
Van91I	CCANNNNNTGG	2 cut(s)	169, 277
Vha464I	CTTAAG	1 cut(s)	1474
VpaK11BI	GGWCC	3 cut(s)	157, 729, 1686
VspI	ATTAAT	1 cut(s)	633
XapI	RAATTY	6 cut(s)	125, 886, 895, 1259, 1451, 1888
XceI	RCATGY	1 cut(s)	1180
XcmI	CCANNNNNNNNNTGG	2 cut(s)	85, 767
XmiI	GTMKAC	1 cut(s)	1274
XspI	CTAG	1 cut(s)	1915
ZrmI	AGTACT	1 cut(s)	1550
Zsp2I	ATGCAT	3 cut(s)	751, 1468, 1699

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.