AT3G06778

Heat shock protein binding

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
arabidopsis_thaliana
3
OG0014068
Physical Location & Seq
Reverse (-)
2140026 .. 2141547
1522 bp
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UTR
Exon/CDS
Intron
AT3G06778.1

Sequence Viewer

Length: 690 bp
ATGGGTAAGATCCGACCCGGACCGGATCCAAAAGCGGCATTGGTCTCAGATATTTTAGCGCTATCGAGATCACCAATCTCTTGCATTCACATCAATCGCATCTCATCCGGTTCATGTTTCATCGACTGGTATCTCATTCTCGGTATTCAGGAAGATGCAGAGGTGAAGGTCATACGTAAACGATATCACAAATTAGCTTTGAAGGTTCATCCCGATAAAAACAATCACCCAAAAGCAGATATTGCTTTTAAGCTCATCCACGAGGCTTATTTATGTCTTTCCGACGAAACAAAGAGAAGAAGCTTCAACATAGACCGACGAAATAACATTTGTCTAAAATGCAGCCGAGTCTCACACAAATCCAAAGAAAACCGTAATGATTCTAAACCGAACCGGTTCTGTCAAACCCTCAAGGACATTAGGGACAAGTTCAGAGAAGAGAACATGGTGATAGAGAGATGTCTAAAAACCAATAGTGCATTCTTCATGGGGAACCGAACCAATGAAACCCCGCCGGTTTATGGTATACCAAAGCAAAACCGGATTAATAAGGAGTCGCCTGTTTTTAATCCATCGGATTATAGGTTATGGGGTTATCCACATGTGAGAAATCGGGTGTTCGACTACAACTTGTCGTCCGATTGGAATATGTTCACGAGAAGCAGATCCACTTGTGTTCACTCATCGTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
DnaJ

Protein Analysis

229

Amino Acids

26.71

Weight (kDa)

9.73

Isoelectric Point (pI)

55.01

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
DnaJ PF00226 42 - 102 1.3e-20 DnaJ domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0014068)

Species Orthologous Gene IDs
arabidopsis_thaliana AT3G06778
fragaria_vesca FvH4_4g18890
malus_domestica MD13G1162300.v1.1 MD16G1162100.v1.1
prunus_persica Prupe.1G129600_v2.0.a1
pyrus_communis pycom13g13850 pycom16g13750
rosa_chinensis RchiOBHm_Chr4g0423791
rosa_multiflora Rmu_co8479069.1_g000001
rosa_roxburghii Rroxscaffold_5G00365900
rosa_rugosa Rorug04G0190600 Rorug04G0190700
rosa_samantha Rh4AG250100 Rh4BG255300 Rh4CG263300 Rh4DG249600
rosa_wichuraiana Rw4G021410

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccI GTMKAC 1 cut(s) 526
AciI CCGC 2 cut(s) 35, 512
AclWI GGATC 4 cut(s) 4, 20, 33, 660
AfeI AGCGCT 1 cut(s) 60
AfiI CCNNNNNNNGG 1 cut(s) 521
AflIII ACRYGT 1 cut(s) 601
AgeI ACCGGT 1 cut(s) 393
AgsI TTSAA 2 cut(s) 202, 307
AjuI GAANNNNNNNTTGG 2 cut(s) 464, 496
AluBI AGCT 3 cut(s) 197, 253, 303
AluI AGCT 3 cut(s) 197, 253, 303
Alw26I GTCTC 2 cut(s) 49, 355
AlwI GGATC 4 cut(s) 4, 20, 33, 660
Aor51HI AGCGCT 1 cut(s) 60
ApeKI GCWGC 1 cut(s) 342
AseI ATTAAT 1 cut(s) 546
AsiGI ACCGGT 1 cut(s) 393
Asp700I GAANNNNTTC 2 cut(s) 395, 650
AspLEI GCGC 1 cut(s) 61
AspS9I GGNCC 1 cut(s) 20
AsuC2I CCSGG 1 cut(s) 18
AsuHPI GGTGA 4 cut(s) 63, 175, 218, 460
AvaII GGWCC 1 cut(s) 20
BamHI GGATCC 1 cut(s) 25
BauI CACGAG 2 cut(s) 260, 655
BbvI GCAGC 1 cut(s) 354
BccI CCATC 1 cut(s) 580
BcnI CCSGG 1 cut(s) 18
BcoDI GTCTC 2 cut(s) 49, 355
BfoI RGCGCY 1 cut(s) 62
BisI GCNGC 2 cut(s) 36, 343
BlsI GCNGC 2 cut(s) 37, 344
Bme1390I CCNGG 1 cut(s) 18
Bme18I GGWCC 1 cut(s) 20
BmgT120I GGNCC 1 cut(s) 20
BmiI GGNNCC 2 cut(s) 27, 494
BmrFI CCNGG 1 cut(s) 18
BmsI GCATC 2 cut(s) 108, 145
BpuEI CTTGAG 1 cut(s) 395
BpuMI CCSGG 1 cut(s) 18
BsaAI YACGTR 1 cut(s) 176
BsaI GGTCTC 1 cut(s) 49
BsaWI WCCGGW 4 cut(s) 22, 107, 393, 540
Bsc4I CCNNNNNNNGG 1 cut(s) 521
Bse118I RCCGGY 2 cut(s) 393, 514
Bse1I ACTGG 1 cut(s) 131
BseGI GGATG 3 cut(s) 104, 208, 255
BseLI CCNNNNNNNGG 1 cut(s) 521
BseMII CTCAG 1 cut(s) 60
BseNI ACTGG 1 cut(s) 131
BseXI GCAGC 1 cut(s) 354
BshTI ACCGGT 1 cut(s) 393
BsiSI CCGG 6 cut(s) 18, 23, 108, 394, 515, 541
BslFI GGGAC 1 cut(s) 437
BslI CCNNNNNNNGG 1 cut(s) 521
BsmAI GTCTC 2 cut(s) 49, 355
BsmFI GGGAC 1 cut(s) 437
BsmI GAATGC 2 cut(s) 84, 479
Bso31I GGTCTC 1 cut(s) 49
Bsp143I GATC 4 cut(s) 9, 25, 68, 665
BspACI CCGC 2 cut(s) 35, 512
BspCNI CTCAG 1 cut(s) 59
BspLI GGNNCC 2 cut(s) 27, 494
BspPI GGATC 4 cut(s) 4, 20, 33, 660
BspTNI GGTCTC 1 cut(s) 49
BsrFI RCCGGY 2 cut(s) 393, 514
BsrI ACTGG 1 cut(s) 131
BssAI RCCGGY 2 cut(s) 393, 514
BssMI GATC 4 cut(s) 9, 25, 68, 665
BssNAI GTATAC 1 cut(s) 527
BssSI CACGAG 2 cut(s) 260, 655
Bst1107I GTATAC 1 cut(s) 527
Bst2BI CACGAG 2 cut(s) 260, 655
Bst4CI ACNGT 1 cut(s) 374
Bst6I CTCTTC 1 cut(s) 432
BstAPI GCANNNNNTGC 1 cut(s) 242
BstBAI YACGTR 1 cut(s) 176
BstDEI CTNAG 1 cut(s) 46
BstF5I GGATG 3 cut(s) 104, 208, 255
BstH2I RGCGCY 1 cut(s) 62
BstHHI GCGC 1 cut(s) 61
BstKTI GATC 4 cut(s) 12, 28, 71, 668
BstMAI GTCTC 2 cut(s) 49, 355
BstMBI GATC 4 cut(s) 9, 25, 68, 665
BstMWI GCNNNNNNNGC 1 cut(s) 242
BstNSI RCATGY 1 cut(s) 605
BstSCI CCNGG 1 cut(s) 16
BstSNI TACGTA 1 cut(s) 176
BstV1I GCAGC 1 cut(s) 354
BstX2I RGATCY 3 cut(s) 9, 25, 665
BstYI RGATCY 3 cut(s) 9, 25, 665
BstZ17I GTATAC 1 cut(s) 527
BtsCI GGATG 3 cut(s) 104, 208, 255
CfoI GCGC 1 cut(s) 61
Cfr10I RCCGGY 2 cut(s) 393, 514
Cfr13I GGNCC 1 cut(s) 20
CpoI CGGWCCG 1 cut(s) 20
CspAI ACCGGT 1 cut(s) 393
CspI CGGWCCG 1 cut(s) 20
CviAII CATG 4 cut(s) 114, 445, 487, 602
CviJI RGCY 5 cut(s) 197, 253, 266, 303, 345
CviKI_1 RGCY 5 cut(s) 197, 253, 266, 303, 345
DdeI CTNAG 1 cut(s) 46
DpnI GATC 4 cut(s) 11, 27, 70, 667
DpnII GATC 4 cut(s) 9, 25, 68, 665
Eam1104I CTCTTC 1 cut(s) 432
EarI CTCTTC 1 cut(s) 432
Eco105I TACGTA 1 cut(s) 176
Eco31I GGTCTC 1 cut(s) 49
Eco32I GATATC 1 cut(s) 185
Eco47I GGWCC 1 cut(s) 20
Eco47III AGCGCT 1 cut(s) 60
EcoRV GATATC 1 cut(s) 185
FaeI CATG 4 cut(s) 117, 448, 490, 605
FaqI GGGAC 1 cut(s) 437
FatI CATG 4 cut(s) 113, 444, 486, 601
FauI CCCGC 1 cut(s) 519
FblI GTMKAC 1 cut(s) 526
Fnu4HI GCNGC 2 cut(s) 36, 343
FokI GGATG 3 cut(s) 91, 195, 242
Fsp4HI GCNGC 2 cut(s) 36, 343
GlaI GCGC 1 cut(s) 60
GluI GCNGC 2 cut(s) 36, 343
HaeII RGCGCY 1 cut(s) 62
HapII CCGG 6 cut(s) 18, 23, 108, 394, 515, 541
HhaI GCGC 1 cut(s) 61
Hin1II CATG 4 cut(s) 117, 448, 490, 605
Hin6I GCGC 1 cut(s) 59
HinP1I GCGC 1 cut(s) 59
HindIII AAGCTT 1 cut(s) 301
HinfI GANTC 3 cut(s) 348, 380, 554
HpaII CCGG 6 cut(s) 18, 23, 108, 394, 515, 541
HphI GGTGA 4 cut(s) 63, 175, 218, 460
Hpy166II GTNNAC 4 cut(s) 179, 527, 654, 679
Hpy188I TCNGA 6 cut(s) 14, 49, 283, 434, 577, 640
Hpy188III TCNNGA 5 cut(s) 66, 149, 212, 655, 687
Hpy8I GTNNAC 4 cut(s) 179, 527, 654, 679
Hpy99I CGWCG 2 cut(s) 287, 321
HpyAV CCTTC 2 cut(s) 160, 196
HpyCH4III ACNGT 1 cut(s) 374
HpyCH4IV ACGT 1 cut(s) 175
HpyCH4V TGCA 4 cut(s) 84, 158, 342, 479
HpyF10VI GCNNNNNNNGC 1 cut(s) 242
HpyF3I CTNAG 1 cut(s) 46
HpySE526I ACGT 1 cut(s) 175
Hsp92II CATG 4 cut(s) 117, 448, 490, 605
HspAI GCGC 1 cut(s) 59
Kzo9I GATC 4 cut(s) 9, 25, 68, 665
LpnPI CCDG 9 cut(s) 31, 36, 112, 121, 134, 407, 528, 554, 573
Lsp1109I GCAGC 1 cut(s) 354
LweI GCATC 2 cut(s) 108, 145
MaeII ACGT 1 cut(s) 175
MalI GATC 4 cut(s) 11, 27, 70, 667
MboI GATC 4 cut(s) 9, 25, 68, 665
MboII GAAGA 4 cut(s) 164, 309, 449, 475
MflI RGATCY 3 cut(s) 9, 25, 665
MluCI AATT 1 cut(s) 191
MlyI GAGTC 2 cut(s) 357, 563
MmeI TCCRAC 2 cut(s) 37, 306
MnlI CCTC 3 cut(s) 154, 256, 419
MroXI GAANNNNTTC 2 cut(s) 395, 650
MseI TTAA 3 cut(s) 249, 546, 567
MspI CCGG 6 cut(s) 18, 23, 108, 394, 515, 541
MspR9I CCNGG 1 cut(s) 18
Mva1269I GAATGC 2 cut(s) 84, 479
MwoI GCNNNNNNNGC 1 cut(s) 242
NciI CCSGG 1 cut(s) 18
NdeII GATC 4 cut(s) 9, 25, 68, 665
NlaIII CATG 4 cut(s) 117, 448, 490, 605
NlaIV GGNNCC 2 cut(s) 27, 494
NmeAIII GCCGAG 1 cut(s) 371
NspI RCATGY 1 cut(s) 605
PciI ACATGT 1 cut(s) 601
PctI GAATGC 2 cut(s) 84, 479
PdmI GAANNNNTTC 2 cut(s) 395, 650
PfeI GAWTC 1 cut(s) 380
PinAI ACCGGT 1 cut(s) 393
PkrI GCNGC 2 cut(s) 37, 344
PleI GAGTC 2 cut(s) 356, 562
PpsI GAGTC 2 cut(s) 356, 562
Ppu21I YACGTR 1 cut(s) 176
PscI ACATGT 1 cut(s) 601
PshBI ATTAAT 1 cut(s) 546
PspN4I GGNNCC 2 cut(s) 27, 494
PspPI GGNCC 1 cut(s) 20
PsuI RGATCY 3 cut(s) 9, 25, 665
Rsr2I CGGWCCG 1 cut(s) 20
RsrII CGGWCCG 1 cut(s) 20
SaqAI TTAA 3 cut(s) 249, 546, 567
SatI GCNGC 2 cut(s) 36, 343
Sau3AI GATC 4 cut(s) 9, 25, 68, 665
Sau96I GGNCC 1 cut(s) 20
SchI GAGTC 2 cut(s) 357, 563
ScrFI CCNGG 1 cut(s) 18
SetI ASST 8 cut(s) 165, 171, 178, 199, 207, 255, 305, 587
SfaNI GCATC 2 cut(s) 108, 145
SinI GGWCC 1 cut(s) 20
SmlI CTYRAG 1 cut(s) 410
SmoI CTYRAG 1 cut(s) 410
SnaBI TACGTA 1 cut(s) 176
Sse9I AATT 1 cut(s) 191
SsiI CCGC 2 cut(s) 35, 512
StyD4I CCNGG 1 cut(s) 16
TaaI ACNGT 1 cut(s) 374
TaiI ACGT 1 cut(s) 178
TaqI TCGA 3 cut(s) 65, 123, 621
TaqII GACCGA 1 cut(s) 330
TasI AATT 1 cut(s) 191
TauI GCSGC 1 cut(s) 38
TfiI GAWTC 1 cut(s) 380
Tru1I TTAA 3 cut(s) 249, 546, 567
Tru9I TTAA 3 cut(s) 249, 546, 567
TseI GCWGC 1 cut(s) 342
TspDTI ATGAA 5 cut(s) 102, 109, 197, 475, 519
VpaK11BI GGWCC 1 cut(s) 20
VspI ATTAAT 1 cut(s) 546
XceI RCATGY 1 cut(s) 605
XmiI GTMKAC 1 cut(s) 526
XmnI GAANNNNTTC 2 cut(s) 395, 650
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.