Prupe.1G129600_v2.0.a1

DnaJ molecular chaperone homology domain

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
prunus_persica
Pp01
OG0014068
Physical Location & Seq
Reverse (-)
10097181 .. 10099210
2030 bp
Loading structure...
UTR
Exon/CDS
Intron
Prupe.1G129600.1

Sequence Viewer

Length: 816 bp
ATGGCACATGATTCTGATTTCAAATCCCAGTTGGTGACAGAGATTTGCTCCATTTCCACGCGCTCCATTGCCTGCTCTCATAGGCATGGCTGCAGCAACAGCCCAGCTAAATCATCATCTTTCATCGATTGGTATCGTCTTCTTCGAGTGCAAGAAAATGCTGGCAGGGATGTTATAAGAAAGAGGTACCATGAACTTGCTTTGCAACTTCATCCAGATAAGAACAAGCATCCCAAGGCTGAGATTGCCTTCAAACTTGTCTCCGAGGCATATTCATGTCTCTCTGATAATGCAAAAAGAAGAGCTTTTGACTTAGAGAGATGGAGGAAGTTCTGCTTTGAGTGTGGTACAATCCCCTACACCACCCACAAAACTTCAAGCAATGCCAGTGCTTCAGAACACAAGGCTTGTAATCCCACAAGCTCGTCAAGGTCTTGCAAAGTTGTCAAGGGTCTGAAAGATATCAGAAACAGGTTTAGGGAGGAGGCAAGAGTTATAGAAAACTGTTTGAGGGCCAATGCAGCTGCTGCACCAAGAAGAGAATCCTCACTCTTCAGCCCACCTGCTGCTTATGACGTGTTTCAGAGCAGGTCCAGCAGAGAGTCCCCCATCTTCAATCCATCTGACCACAAGGTTCAAGGCTATCCTCATCTCCGGACTCGAATTCACAGTAAACCTCAGAACTTTTGGCACCTGCGAACGGGGCATCAAGTACTGAATTATGAACCCGGTAGAGCTACGTATGATTCTCCGGTGTTCGAGGTCAGATCAGATAGGGCATTTTTTAAGAGCAGATCTACTTGTGTCCGTTCATAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
DnaJ

Protein Analysis

272

Amino Acids

31.05

Weight (kDa)

9.77

Isoelectric Point (pI)

72.48

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0014068)

Species Orthologous Gene IDs
arabidopsis_thaliana AT3G06778
fragaria_vesca FvH4_4g18890
malus_domestica MD13G1162300.v1.1 MD16G1162100.v1.1
prunus_persica Prupe.1G129600_v2.0.a1
pyrus_communis pycom13g13850 pycom16g13750
rosa_chinensis RchiOBHm_Chr4g0423791
rosa_multiflora Rmu_co8479069.1_g000001
rosa_roxburghii Rroxscaffold_5G00365900
rosa_rugosa Rorug04G0190600 Rorug04G0190700
rosa_samantha Rh4AG250100 Rh4BG255300 Rh4CG263300 Rh4DG249600
rosa_wichuraiana Rw4G021410

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 1 cut(s) 176
AarI CACCTGC 2 cut(s) 571, 702
Acc36I ACCTGC 3 cut(s) 571, 579, 702
Acc65I GGTACC 1 cut(s) 186
AccB1I GGYRCC 2 cut(s) 186, 690
AccII CGCG 1 cut(s) 61
AccIII TCCGGA 1 cut(s) 654
AcsI RAATTY 1 cut(s) 663
AcuI CTGAAG 2 cut(s) 378, 538
AfaI GTAC 3 cut(s) 188, 349, 714
AfiI CCNNNNNNNGG 1 cut(s) 700
AflIII ACRYGT 1 cut(s) 576
AgsI TTSAA 5 cut(s) 22, 253, 378, 616, 638
AjiI CACGTC 1 cut(s) 577
AluBI AGCT 5 cut(s) 107, 305, 423, 524, 737
AluI AGCT 5 cut(s) 107, 305, 423, 524, 737
Alw26I GTCTC 2 cut(s) 265, 284
AlwNI CAGNNNCTG 1 cut(s) 527
Aor13HI TCCGGA 1 cut(s) 654
AoxI GGCC 1 cut(s) 513
ApeKI GCWGC 6 cut(s) 90, 93, 521, 524, 527, 566
ApoI RAATTY 1 cut(s) 663
Asp718I GGTACC 1 cut(s) 186
AspLEI GCGC 1 cut(s) 63
AspS9I GGNCC 2 cut(s) 513, 591
AsuC2I CCSGG 1 cut(s) 729
AsuHPI GGTGA 1 cut(s) 46
AvaII GGWCC 1 cut(s) 591
BanI GGYRCC 2 cut(s) 186, 690
BbsI GAAGAC 1 cut(s) 131
BbvI GCAGC 6 cut(s) 77, 105, 511, 514, 533, 553
BccI CCATC 3 cut(s) 315, 617, 628
BcnI CCSGG 1 cut(s) 729
BcoDI GTCTC 2 cut(s) 265, 284
BfmI CTRYAG 1 cut(s) 91
BfuAI ACCTGC 3 cut(s) 571, 579, 702
BglII AGATCT 1 cut(s) 794
BisI GCNGC 6 cut(s) 91, 94, 522, 525, 528, 567
BlsI GCNGC 6 cut(s) 92, 95, 523, 526, 529, 568
BmcAI AGTACT 1 cut(s) 714
Bme1390I CCNGG 1 cut(s) 729
Bme18I GGWCC 1 cut(s) 591
BmgBI CACGTC 1 cut(s) 577
BmgT120I GGNCC 2 cut(s) 513, 591
BmiI GGNNCC 2 cut(s) 188, 692
BmrFI CCNGG 1 cut(s) 729
BmrI ACTGGG 1 cut(s) 22
BmsI GCATC 2 cut(s) 238, 715
BmuI ACTGGG 1 cut(s) 22
BpiI GAAGAC 1 cut(s) 131
BplI GAGNNNNNCTC 2 cut(s) 32, 64
BpuMI CCSGG 1 cut(s) 729
Bsa29I ATCGAT 1 cut(s) 126
BsaAI YACGTR 1 cut(s) 741
BsaBI GATNNNNATC 1 cut(s) 132
BsaJI CCNNGG 2 cut(s) 234, 264
BsaWI WCCGGW 2 cut(s) 654, 751
Bsc4I CCNNNNNNNGG 1 cut(s) 700
Bse1I ACTGG 2 cut(s) 28, 387
Bse3DI GCAATG 2 cut(s) 66, 388
Bse8I GATNNNNATC 1 cut(s) 132
BseAI TCCGGA 1 cut(s) 654
BseCI ATCGAT 1 cut(s) 126
BseDI CCNNGG 2 cut(s) 234, 264
BseGI GGATG 3 cut(s) 175, 211, 229
BseJI GATNNNNATC 1 cut(s) 132
BseLI CCNNNNNNNGG 1 cut(s) 700
BseMI GCAATG 2 cut(s) 66, 388
BseMII CTCAG 2 cut(s) 231, 692
BseNI ACTGG 2 cut(s) 28, 387
BseRI GAGGAG 1 cut(s) 497
BseXI GCAGC 6 cut(s) 77, 105, 511, 514, 533, 553
BseYI CCCAGC 1 cut(s) 103
BsgI GTGCAG 1 cut(s) 513
Bsh1236I CGCG 1 cut(s) 61
BshFI GGCC 1 cut(s) 515
BshNI GGYRCC 2 cut(s) 186, 690
BshVI ATCGAT 1 cut(s) 126
BsiSI CCGG 3 cut(s) 655, 729, 752
BslFI GGGAC 1 cut(s) 589
BslI CCNNNNNNNGG 1 cut(s) 700
BsmAI GTCTC 2 cut(s) 265, 284
BsmFI GGGAC 1 cut(s) 589
BsnI GGCC 1 cut(s) 515
Bsp13I TCCGGA 1 cut(s) 654
Bsp143I GATC 2 cut(s) 767, 794
BspANI GGCC 1 cut(s) 515
BspCNI CTCAG 2 cut(s) 232, 691
BspDI ATCGAT 1 cut(s) 126
BspEI TCCGGA 1 cut(s) 654
BspFNI CGCG 1 cut(s) 61
BspLI GGNNCC 2 cut(s) 188, 692
BspMAI CTGCAG 1 cut(s) 95
BspMI ACCTGC 3 cut(s) 571, 579, 702
BspQI GCTCTTC 1 cut(s) 295
BspT107I GGYRCC 2 cut(s) 186, 690
BsrDI GCAATG 2 cut(s) 66, 388
BsrI ACTGG 2 cut(s) 28, 387
BssECI CCNNGG 2 cut(s) 234, 264
BssMI GATC 2 cut(s) 767, 794
BssT1I CCWWGG 1 cut(s) 234
Bst4CI ACNGT 2 cut(s) 506, 671
Bst6I CTCTTC 3 cut(s) 295, 532, 557
BstAPI GCANNNNNTGC 1 cut(s) 527
BstBAI YACGTR 1 cut(s) 741
BstC8I GCNNGC 2 cut(s) 73, 163
BstDEI CTNAG 3 cut(s) 240, 313, 678
BstF5I GGATG 3 cut(s) 175, 211, 229
BstFNI CGCG 1 cut(s) 61
BstHHI GCGC 1 cut(s) 63
BstKTI GATC 2 cut(s) 770, 797
BstMAI GTCTC 2 cut(s) 265, 284
BstMBI GATC 2 cut(s) 767, 794
BstMWI GCNNNNNNNGC 6 cut(s) 99, 245, 521, 527, 594, 703
BstSCI CCNGG 1 cut(s) 727
BstSFI CTRYAG 1 cut(s) 91
BstSNI TACGTA 1 cut(s) 741
BstUI CGCG 1 cut(s) 61
BstV1I GCAGC 6 cut(s) 77, 105, 511, 514, 533, 553
BstV2I GAAGAC 1 cut(s) 131
BstX2I RGATCY 1 cut(s) 794
BstYI RGATCY 1 cut(s) 794
Bsu15I ATCGAT 1 cut(s) 126
BsuRI GGCC 1 cut(s) 515
BsuTUI ATCGAT 1 cut(s) 126
BtrI CACGTC 1 cut(s) 577
BtsCI GGATG 3 cut(s) 175, 211, 229
BtsIMutI CAGTG 1 cut(s) 394
BveI ACCTGC 3 cut(s) 571, 579, 702
Cac8I GCNNGC 2 cut(s) 73, 163
CaiI CAGNNNCTG 1 cut(s) 527
CfoI GCGC 1 cut(s) 63
Cfr13I GGNCC 2 cut(s) 513, 591
ClaI ATCGAT 1 cut(s) 126
Csp6I GTAC 3 cut(s) 187, 348, 713
CviAII CATG 4 cut(s) 8, 86, 191, 276
CviQI GTAC 3 cut(s) 187, 348, 713
DdeI CTNAG 3 cut(s) 240, 313, 678
DpnI GATC 2 cut(s) 769, 796
DpnII GATC 2 cut(s) 767, 794
Eam1104I CTCTTC 3 cut(s) 295, 532, 557
EarI CTCTTC 3 cut(s) 295, 532, 557
Eco105I TACGTA 1 cut(s) 741
Eco130I CCWWGG 1 cut(s) 234
Eco32I GATATC 1 cut(s) 463
Eco47I GGWCC 1 cut(s) 591
Eco57I CTGAAG 2 cut(s) 378, 538
EcoRI GAATTC 1 cut(s) 663
EcoRV GATATC 1 cut(s) 463
EcoT14I CCWWGG 1 cut(s) 234
ErhI CCWWGG 1 cut(s) 234
FaeI CATG 4 cut(s) 11, 89, 194, 279
FalI AAGNNNNNCTT 4 cut(s) 289, 321, 320, 352
FaqI GGGAC 1 cut(s) 589
FatI CATG 4 cut(s) 7, 85, 190, 275
Fnu4HI GCNGC 6 cut(s) 91, 94, 522, 525, 528, 567
FokI GGATG 3 cut(s) 182, 198, 216
Fsp4HI GCNGC 6 cut(s) 91, 94, 522, 525, 528, 567
GlaI GCGC 1 cut(s) 62
GluI GCNGC 6 cut(s) 91, 94, 522, 525, 528, 567
GsaI CCCAGC 1 cut(s) 107
HaeIII GGCC 1 cut(s) 515
HapII CCGG 3 cut(s) 655, 729, 752
HhaI GCGC 1 cut(s) 63
Hin1II CATG 4 cut(s) 11, 89, 194, 279
Hin6I GCGC 1 cut(s) 61
HinP1I GCGC 1 cut(s) 61
HinfI GANTC 5 cut(s) 11, 542, 602, 658, 746
HpaII CCGG 3 cut(s) 655, 729, 752
HphI GGTGA 1 cut(s) 46
Hpy166II GTNNAC 1 cut(s) 674
Hpy188III TCNNGA 2 cut(s) 215, 655
Hpy8I GTNNAC 1 cut(s) 674
HpyAV CCTTC 1 cut(s) 259
HpyCH4III ACNGT 2 cut(s) 506, 671
HpyCH4IV ACGT 2 cut(s) 576, 740
HpyCH4V TGCA 7 cut(s) 93, 151, 205, 293, 438, 521, 530
HpyF10VI GCNNNNNNNGC 6 cut(s) 99, 245, 521, 527, 594, 703
HpyF3I CTNAG 3 cut(s) 240, 313, 678
HpySE526I ACGT 2 cut(s) 576, 740
Hsp92II CATG 4 cut(s) 11, 89, 194, 279
HspAI GCGC 1 cut(s) 61
Kpn2I TCCGGA 1 cut(s) 654
KpnI GGTACC 1 cut(s) 190
Kzo9I GATC 2 cut(s) 767, 794
LguI GCTCTTC 1 cut(s) 295
LmnI GCTCC 2 cut(s) 53, 68
Lsp1109I GCAGC 6 cut(s) 77, 105, 511, 514, 533, 553
LweI GCATC 2 cut(s) 238, 715
MaeII ACGT 2 cut(s) 576, 740
MaeIII GTNAC 1 cut(s) 34
MalI GATC 2 cut(s) 769, 796
MboI GATC 2 cut(s) 767, 794
MboII GAAGA 6 cut(s) 131, 134, 312, 544, 549, 604
MflI RGATCY 1 cut(s) 794
MluCI AATT 2 cut(s) 663, 718
MlyI GAGTC 2 cut(s) 611, 652
MroI TCCGGA 1 cut(s) 654
MseI TTAA 1 cut(s) 786
MslI CAYNNNNRTG 2 cut(s) 84, 274
MspA1I CMGCKG 1 cut(s) 524
MspI CCGG 3 cut(s) 655, 729, 752
MspR9I CCNGG 1 cut(s) 729
MvnI CGCG 1 cut(s) 61
MwoI GCNNNNNNNGC 6 cut(s) 99, 245, 521, 527, 594, 703
NciI CCSGG 1 cut(s) 729
NdeII GATC 2 cut(s) 767, 794
NlaIII CATG 4 cut(s) 11, 89, 194, 279
NlaIV GGNNCC 2 cut(s) 188, 692
NmuCI GTSAC 1 cut(s) 34
PaqCI CACCTGC 2 cut(s) 571, 702
PciSI GCTCTTC 1 cut(s) 295
PcsI WCGNNNNNNNCGW 1 cut(s) 142
PfeI GAWTC 3 cut(s) 11, 542, 746
PkrI GCNGC 6 cut(s) 92, 95, 523, 526, 529, 568
PleI GAGTC 2 cut(s) 610, 652
PpsI GAGTC 2 cut(s) 610, 652
Ppu21I YACGTR 1 cut(s) 741
PsiI TTATAA 1 cut(s) 176
PspFI CCCAGC 1 cut(s) 103
PspN4I GGNNCC 2 cut(s) 188, 692
PspPI GGNCC 2 cut(s) 513, 591
PstI CTGCAG 1 cut(s) 95
PstNI CAGNNNCTG 1 cut(s) 527
PsuI RGATCY 1 cut(s) 794
PvuII CAGCTG 1 cut(s) 524
RsaI GTAC 3 cut(s) 188, 349, 714
RsaNI GTAC 3 cut(s) 187, 348, 713
RseI CAYNNNNRTG 2 cut(s) 84, 274
SapI GCTCTTC 1 cut(s) 295
SaqAI TTAA 1 cut(s) 786
SatI GCNGC 6 cut(s) 91, 94, 522, 525, 528, 567
Sau3AI GATC 2 cut(s) 767, 794
Sau96I GGNCC 2 cut(s) 513, 591
ScaI AGTACT 1 cut(s) 714
SchI GAGTC 2 cut(s) 611, 652
ScrFI CCNGG 1 cut(s) 729
SfaNI GCATC 2 cut(s) 238, 715
SfcI CTRYAG 1 cut(s) 91
SinI GGWCC 1 cut(s) 591
SmiMI CAYNNNNRTG 2 cut(s) 84, 274
SnaBI TACGTA 1 cut(s) 741
Sse9I AATT 2 cut(s) 663, 718
StyD4I CCNGG 1 cut(s) 727
StyI CCWWGG 1 cut(s) 234
TaaI ACNGT 2 cut(s) 506, 671
TaiI ACGT 2 cut(s) 579, 743
TaqI TCGA 4 cut(s) 126, 145, 661, 759
TasI AATT 2 cut(s) 663, 718
TatI WGTACW 1 cut(s) 712
TfiI GAWTC 3 cut(s) 11, 542, 746
Tru1I TTAA 1 cut(s) 786
Tru9I TTAA 1 cut(s) 786
TscAI CASTG 1 cut(s) 394
TseFI GTSAC 1 cut(s) 34
TseI GCWGC 6 cut(s) 90, 93, 521, 524, 527, 566
Tsp45I GTSAC 1 cut(s) 34
TspDTI ATGAA 6 cut(s) 112, 200, 207, 264, 738, 801
TspGWI ACGGA 1 cut(s) 797
TspRI CASTG 1 cut(s) 394
VpaK11BI GGWCC 1 cut(s) 591
XapI RAATTY 1 cut(s) 663
ZrmI AGTACT 1 cut(s) 714
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.