Rorug04G0190700

DnaJ molecular chaperone homology domain

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_rugosa
GWHBQTZ00000004
OG0014068
Physical Location & Seq
Reverse (-)
33076465 .. 33076860
396 bp
Loading structure...
UTR
Exon/CDS
Intron
Rorug04G0190700.1

Sequence Viewer

Length: 396 bp
ATGGTCGGGTCCAGAAGGTTGTGCAGAGGTGGAAACCGACAAGCATCCCCAAGCTCAATGTTGATGGAGCTTTTGGGGGCACATGCTTCTCATGGGGGAGTTGGAGGAGTGCTTAGAGACTCACATGGTAGGTTTCTTGCTGCTTTTGCAGAACCTGTGCTTCATGCAAATTATGCACAGCAAGTTGAGCTATGTGCCATTATGGAAGGACTGAAATATGTTGAACATTTGCAACTGCAGCAGTTGGAAGTGGAAACAAACTGTCTCTTAGCAGTCCAATGTATTAACAATGATGTTGAAGATCTCTCTGAACTTAGTAATATGGTTCTAGACAGTAGAACCAAAATTTGTTCCATGCAAGGTGTGAAACTCATTTGCACCCAGGTCGTGCAATAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
DnaJ

Protein Analysis

131

Amino Acids

14.28

Weight (kDa)

5.91

Isoelectric Point (pI)

39.35

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
RVT_3 PF13456 29 - 119 6.9e-15 Reverse transcriptase-like
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0014068)

Species Orthologous Gene IDs
arabidopsis_thaliana AT3G06778
fragaria_vesca FvH4_4g18890
malus_domestica MD13G1162300.v1.1 MD16G1162100.v1.1
prunus_persica Prupe.1G129600_v2.0.a1
pyrus_communis pycom13g13850 pycom16g13750
rosa_chinensis RchiOBHm_Chr4g0423791
rosa_multiflora Rmu_co8479069.1_g000001
rosa_roxburghii Rroxscaffold_5G00365900
rosa_rugosa Rorug04G0190600 Rorug04G0190700
rosa_samantha Rh4AG250100 Rh4BG255300 Rh4CG263300 Rh4DG249600
rosa_wichuraiana Rw4G021410

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AcsI RAATTY 1 cut(s) 345
AgsI TTSAA 2 cut(s) 224, 299
AjnI CCWGG 1 cut(s) 381
AluBI AGCT 3 cut(s) 54, 70, 190
AluI AGCT 3 cut(s) 54, 70, 190
Alw26I GTCTC 2 cut(s) 111, 269
AlwNI CAGNNNCTG 1 cut(s) 155
ApeKI GCWGC 2 cut(s) 140, 238
ApoI RAATTY 1 cut(s) 345
AspS9I GGNCC 1 cut(s) 9
AvaII GGWCC 1 cut(s) 9
BaeGI GKGCMC 1 cut(s) 82
BbvI GCAGC 2 cut(s) 127, 250
BccI CCATC 1 cut(s) 58
BcgI CGANNNNNNTGC 1 cut(s) 367
BciT130I CCWGG 1 cut(s) 383
BcoDI GTCTC 2 cut(s) 111, 269
BfaI CTAG 1 cut(s) 329
BfmI CTRYAG 1 cut(s) 236
BglII AGATCT 1 cut(s) 301
BisI GCNGC 2 cut(s) 141, 239
BlsI GCNGC 2 cut(s) 142, 240
Bme1390I CCNGG 1 cut(s) 383
Bme18I GGWCC 1 cut(s) 9
BmgT120I GGNCC 1 cut(s) 9
BmiI GGNNCC 1 cut(s) 10
BmrFI CCNGG 1 cut(s) 383
BmsI GCATC 1 cut(s) 53
BsaJI CCNNGG 1 cut(s) 381
BseBI CCWGG 1 cut(s) 383
BseDI CCNNGG 1 cut(s) 381
BseGI GGATG 1 cut(s) 44
BseRI GAGGAG 1 cut(s) 120
BseSI GKGCMC 1 cut(s) 82
BseXI GCAGC 2 cut(s) 127, 250
BsgI GTGCAG 1 cut(s) 43
BsmAI GTCTC 2 cut(s) 111, 269
Bsp1286I GDGCHC 1 cut(s) 82
Bsp143I GATC 1 cut(s) 301
BspLI GGNNCC 1 cut(s) 10
BspMAI CTGCAG 1 cut(s) 240
BssECI CCNNGG 1 cut(s) 381
BssMI GATC 1 cut(s) 301
Bst2UI CCWGG 1 cut(s) 383
Bst4CI ACNGT 2 cut(s) 263, 335
BstAPI GCANNNNNTGC 1 cut(s) 173
BstDEI CTNAG 3 cut(s) 113, 268, 314
BstF5I GGATG 1 cut(s) 44
BstKTI GATC 1 cut(s) 304
BstMAI GTCTC 2 cut(s) 111, 269
BstMBI GATC 1 cut(s) 301
BstMWI GCNNNNNNNGC 4 cut(s) 146, 173, 187, 238
BstNI CCWGG 1 cut(s) 383
BstNSI RCATGY 1 cut(s) 86
BstSCI CCNGG 1 cut(s) 381
BstSFI CTRYAG 1 cut(s) 236
BstSLI GKGCMC 1 cut(s) 82
BstV1I GCAGC 2 cut(s) 127, 250
BstX2I RGATCY 1 cut(s) 301
BstYI RGATCY 1 cut(s) 301
BtsCI GGATG 1 cut(s) 44
CaiI CAGNNNCTG 1 cut(s) 155
Cfr13I GGNCC 1 cut(s) 9
CviAII CATG 5 cut(s) 83, 92, 125, 164, 355
CviJI RGCY 3 cut(s) 54, 70, 190
CviKI_1 RGCY 3 cut(s) 54, 70, 190
DdeI CTNAG 3 cut(s) 113, 268, 314
DpnI GATC 1 cut(s) 303
DpnII GATC 1 cut(s) 301
Eco47I GGWCC 1 cut(s) 9
EcoRII CCWGG 1 cut(s) 381
FaeI CATG 5 cut(s) 86, 95, 128, 167, 358
FatI CATG 5 cut(s) 82, 91, 124, 163, 354
Fnu4HI GCNGC 2 cut(s) 141, 239
FokI GGATG 1 cut(s) 31
Fsp4HI GCNGC 2 cut(s) 141, 239
FspBI CTAG 1 cut(s) 329
GluI GCNGC 2 cut(s) 141, 239
Hin1II CATG 5 cut(s) 86, 95, 128, 167, 358
HinfI GANTC 1 cut(s) 119
Hpy188I TCNGA 1 cut(s) 310
Hpy188III TCNNGA 2 cut(s) 12, 329
HpyAV CCTTC 2 cut(s) 9, 200
HpyCH4III ACNGT 2 cut(s) 263, 335
HpyCH4V TGCA 9 cut(s) 24, 149, 167, 176, 232, 238, 358, 378, 391
HpyF10VI GCNNNNNNNGC 4 cut(s) 146, 173, 187, 238
HpyF3I CTNAG 3 cut(s) 113, 268, 314
Hsp92II CATG 5 cut(s) 86, 95, 128, 167, 358
Kzo9I GATC 1 cut(s) 301
LmnI GCTCC 1 cut(s) 67
LpnPI CCDG 3 cut(s) 25, 168, 368
Lsp1109I GCAGC 2 cut(s) 127, 250
LweI GCATC 1 cut(s) 53
MaeI CTAG 1 cut(s) 329
MalI GATC 1 cut(s) 303
MboI GATC 1 cut(s) 301
MboII GAAGA 1 cut(s) 311
MflI RGATCY 1 cut(s) 301
MhlI GDGCHC 1 cut(s) 82
MluCI AATT 2 cut(s) 169, 345
MlyI GAGTC 1 cut(s) 113
MmeI TCCRAC 2 cut(s) 82, 225
MnlI CCTC 2 cut(s) 20, 98
MseI TTAA 1 cut(s) 285
MspR9I CCNGG 1 cut(s) 383
MvaI CCWGG 1 cut(s) 383
MwoI GCNNNNNNNGC 4 cut(s) 146, 173, 187, 238
NdeII GATC 1 cut(s) 301
NlaIII CATG 5 cut(s) 86, 95, 128, 167, 358
NlaIV GGNNCC 1 cut(s) 10
NspI RCATGY 1 cut(s) 86
PkrI GCNGC 2 cut(s) 142, 240
PleI GAGTC 1 cut(s) 113
PpsI GAGTC 1 cut(s) 113
Psp6I CCWGG 1 cut(s) 381
PspGI CCWGG 1 cut(s) 381
PspN4I GGNNCC 1 cut(s) 10
PspPI GGNCC 1 cut(s) 9
PstI CTGCAG 1 cut(s) 240
PstNI CAGNNNCTG 1 cut(s) 155
PsuI RGATCY 1 cut(s) 301
SaqAI TTAA 1 cut(s) 285
SatI GCNGC 2 cut(s) 141, 239
Sau3AI GATC 1 cut(s) 301
Sau96I GGNCC 1 cut(s) 9
SchI GAGTC 1 cut(s) 113
ScrFI CCNGG 1 cut(s) 383
SduI GDGCHC 1 cut(s) 82
SetI ASST 9 cut(s) 20, 31, 56, 72, 134, 157, 192, 364, 387
SfaNI GCATC 1 cut(s) 53
SfcI CTRYAG 1 cut(s) 236
SinI GGWCC 1 cut(s) 9
Sse9I AATT 2 cut(s) 169, 345
SspMI CTAG 1 cut(s) 329
StyD4I CCNGG 1 cut(s) 381
TaaI ACNGT 2 cut(s) 263, 335
TasI AATT 2 cut(s) 169, 345
Tru1I TTAA 1 cut(s) 285
Tru9I TTAA 1 cut(s) 285
TseI GCWGC 2 cut(s) 140, 238
TspDTI ATGAA 1 cut(s) 152
VpaK11BI GGWCC 1 cut(s) 9
XapI RAATTY 1 cut(s) 345
XbaI TCTAGA 1 cut(s) 328
XceI RCATGY 1 cut(s) 86
XspI CTAG 1 cut(s) 329
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.