FvH4_4g18890

DnaJ molecular chaperone homology domain

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
fragaria_vesca
Fvb4
OG0014068
Physical Location & Seq
Forward (+)
22672323 .. 22674005
1683 bp
Loading structure...
UTR
Exon/CDS
Intron
FvH4_4g18890.t1

Sequence Viewer

Length: 816 bp
ATGGGACAACATTCTGATTACAAATCGCAGTTGGTGACAGAGATTTGCTCCATTTCGAAATTTTCCATTGCTTGTTCTCACAGGCACTGCACTACCCCTGCTCGATCTTCTTCAACTTTCGTCGATTGGTATCGTCTTCTTGGGGTGGAAGAAACAGCTGGGATTGATGTTATAAGGAAGAGATACCATGAACTTGCTTTACAACTTCACCCAGATAAGAACAAACAAGCCAAGGCTGAAGTCGCCTTCAAACTTGTCTCAGAGGCATATTCATGTCTCTCTGATGATGAAAATAGAAGAGCTTTTGACTTGGAGAGATGGAGCAAGTTCTGCTTTGAGTGTGGTACAATTCCCTACACAACTTACAAGGCTCCCAGCAATGCCAAGGCTTCAGAACCCACAAGTCGGTCGAGGTCTTGTAAAGTTATCAAGGGCCTGAAAGATATCAGAAATCGATTTAGAGAAGAGGCAAGAGTGATTGAAAACTGTCTGAGGGTTAATAATGCAGCATCAAGAAATGAAACCTCACTCTGTAGTCCACCTTCTTATGTGTTTCAGAGCAATTTTAATCCTAGGTTGAGCAGGGAAACCCCTGTATTCAACCCATCTGATCATGTGGTTCAAGGATATCCCCATCTCAGGACTCGAATCTACGACAAAGATAAATCTCGGAGCTTTTGGTGCTTGAGAACAGGGCATCACATGTTGAATTGTGAACAAGGAAGGGATAGTAGGGCTACTTATGATTCACCAGTATTTGAGGTCAGATCAGATAGTGGAATTTTAAAGAGTAGATCTACTTGTGTTCGTTCATAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
DnaJ

Protein Analysis

272

Amino Acids

31.1

Weight (kDa)

9.2

Isoelectric Point (pI)

65.74

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
DnaJ PF00226 42 - 103 8.4e-21 DnaJ domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0014068)

Species Orthologous Gene IDs
arabidopsis_thaliana AT3G06778
fragaria_vesca FvH4_4g18890
malus_domestica MD13G1162300.v1.1 MD16G1162100.v1.1
prunus_persica Prupe.1G129600_v2.0.a1
pyrus_communis pycom13g13850 pycom16g13750
rosa_chinensis RchiOBHm_Chr4g0423791
rosa_multiflora Rmu_co8479069.1_g000001
rosa_roxburghii Rroxscaffold_5G00365900
rosa_rugosa Rorug04G0190600 Rorug04G0190700
rosa_samantha Rh4AG250100 Rh4BG255300 Rh4CG263300 Rh4DG249600
rosa_wichuraiana Rw4G021410

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 1 cut(s) 173
AcsI RAATTY 2 cut(s) 59, 780
AcuI CTGAAG 2 cut(s) 258, 375
AfaI GTAC 1 cut(s) 346
AfiI CCNNNNNNNGG 2 cut(s) 405, 639
AflIII ACRYGT 1 cut(s) 702
AgsI TTSAA 6 cut(s) 114, 250, 482, 601, 623, 709
AluBI AGCT 3 cut(s) 158, 302, 675
AluI AGCT 3 cut(s) 158, 302, 675
Alw26I GTCTC 2 cut(s) 262, 281
AlwNI CAGNNNCTG 1 cut(s) 87
AoxI GGCC 1 cut(s) 433
ApeKI GCWGC 1 cut(s) 506
ApoI RAATTY 2 cut(s) 59, 780
AspA2I CCTAGG 1 cut(s) 572
AspS9I GGNCC 1 cut(s) 433
AsuHPI GGTGA 3 cut(s) 46, 200, 741
AsuII TTCGAA 1 cut(s) 56
AvrII CCTAGG 1 cut(s) 572
BarI GAAGNNNNNNTAC 2 cut(s) 526, 558
BbsI GAAGAC 1 cut(s) 128
BbvI GCAGC 1 cut(s) 518
BccI CCATC 3 cut(s) 312, 613, 642
BclI TGATCA 1 cut(s) 610
BcoDI GTCTC 2 cut(s) 262, 281
BfaI CTAG 1 cut(s) 573
BfmI CTRYAG 1 cut(s) 532
BglII AGATCT 1 cut(s) 794
BisI GCNGC 1 cut(s) 507
BlnI CCTAGG 1 cut(s) 572
BlsI GCNGC 1 cut(s) 508
BmgT120I GGNCC 1 cut(s) 433
BmiI GGNNCC 1 cut(s) 372
BmsI GCATC 2 cut(s) 518, 706
BpiI GAAGAC 1 cut(s) 128
BplI GAGNNNNNCTC 2 cut(s) 32, 64
Bpu14I TTCGAA 1 cut(s) 56
BpuEI CTTGAG 1 cut(s) 706
Bsa29I ATCGAT 1 cut(s) 454
BsaBI GATNNNNATC 1 cut(s) 129
BsaJI CCNNGG 3 cut(s) 231, 384, 572
Bsc4I CCNNNNNNNGG 2 cut(s) 405, 639
Bse1I ACTGG 1 cut(s) 752
Bse3DI GCAATG 2 cut(s) 66, 385
Bse8I GATNNNNATC 1 cut(s) 129
BseCI ATCGAT 1 cut(s) 454
BseDI CCNNGG 3 cut(s) 231, 384, 572
BseJI GATNNNNATC 1 cut(s) 129
BseLI CCNNNNNNNGG 2 cut(s) 405, 639
BseMI GCAATG 2 cut(s) 66, 385
BseMII CTCAG 3 cut(s) 273, 482, 652
BseNI ACTGG 1 cut(s) 752
BseXI GCAGC 1 cut(s) 518
BseYI CCCAGC 2 cut(s) 158, 374
BsgI GTGCAG 1 cut(s) 73
Bsh1285I CGRYCG 1 cut(s) 410
BshFI GGCC 1 cut(s) 435
BshVI ATCGAT 1 cut(s) 454
BsiEI CGRYCG 1 cut(s) 410
BslFI GGGAC 1 cut(s) 18
BslI CCNNNNNNNGG 2 cut(s) 405, 639
BsmAI GTCTC 2 cut(s) 262, 281
BsmFI GGGAC 1 cut(s) 18
BsnI GGCC 1 cut(s) 435
Bsp119I TTCGAA 1 cut(s) 56
Bsp143I GATC 4 cut(s) 104, 610, 767, 794
BspANI GGCC 1 cut(s) 435
BspCNI CTCAG 3 cut(s) 272, 483, 651
BspDI ATCGAT 1 cut(s) 454
BspLI GGNNCC 1 cut(s) 372
BspQI GCTCTTC 1 cut(s) 292
BspT104I TTCGAA 1 cut(s) 56
BsrDI GCAATG 2 cut(s) 66, 385
BsrI ACTGG 1 cut(s) 752
BssECI CCNNGG 3 cut(s) 231, 384, 572
BssMI GATC 4 cut(s) 104, 610, 767, 794
BssT1I CCWWGG 3 cut(s) 231, 384, 572
Bst4CI ACNGT 1 cut(s) 488
Bst6I CTCTTC 3 cut(s) 173, 292, 459
BstAPI GCANNNNNTGC 1 cut(s) 330
BstBI TTCGAA 1 cut(s) 56
BstDEI CTNAG 3 cut(s) 259, 491, 638
BstKTI GATC 4 cut(s) 107, 613, 770, 797
BstMAI GTCTC 2 cut(s) 262, 281
BstMBI GATC 4 cut(s) 104, 610, 767, 794
BstMCI CGRYCG 1 cut(s) 410
BstMWI GCNNNNNNNGC 3 cut(s) 242, 330, 681
BstNSI RCATGY 1 cut(s) 706
BstSFI CTRYAG 1 cut(s) 532
BstV1I GCAGC 1 cut(s) 518
BstV2I GAAGAC 1 cut(s) 128
BstX2I RGATCY 1 cut(s) 794
BstYI RGATCY 1 cut(s) 794
Bsu15I ATCGAT 1 cut(s) 454
BsuRI GGCC 1 cut(s) 435
BsuTUI ATCGAT 1 cut(s) 454
BtsI GCAGTG 1 cut(s) 85
BtsIMutI CAGTG 1 cut(s) 85
CaiI CAGNNNCTG 1 cut(s) 87
Cfr13I GGNCC 1 cut(s) 433
ClaI ATCGAT 1 cut(s) 454
Csp6I GTAC 1 cut(s) 345
CviAII CATG 4 cut(s) 188, 273, 614, 703
CviJI RGCY 9 cut(s) 158, 230, 236, 302, 371, 389, 435, 675, 737
CviKI_1 RGCY 9 cut(s) 158, 230, 236, 302, 371, 389, 435, 675, 737
CviQI GTAC 1 cut(s) 345
DdeI CTNAG 3 cut(s) 259, 491, 638
DpnI GATC 4 cut(s) 106, 612, 769, 796
DpnII GATC 4 cut(s) 104, 610, 767, 794
DraI TTTAAA 1 cut(s) 786
Eam1104I CTCTTC 3 cut(s) 173, 292, 459
EarI CTCTTC 3 cut(s) 173, 292, 459
Eco130I CCWWGG 3 cut(s) 231, 384, 572
Eco32I GATATC 2 cut(s) 445, 629
Eco57I CTGAAG 2 cut(s) 258, 375
EcoO109I RGGNCCY 1 cut(s) 433
EcoRV GATATC 2 cut(s) 445, 629
EcoT14I CCWWGG 3 cut(s) 231, 384, 572
ErhI CCWWGG 3 cut(s) 231, 384, 572
FaeI CATG 4 cut(s) 191, 276, 617, 706
FaiI YATR 9 cut(s) 173, 189, 268, 274, 549, 615, 704, 744, 814
FalI AAGNNNNNCTT 2 cut(s) 317, 349
FaqI GGGAC 1 cut(s) 18
FatI CATG 4 cut(s) 187, 272, 613, 702
FbaI TGATCA 1 cut(s) 610
Fnu4HI GCNGC 1 cut(s) 507
Fsp4HI GCNGC 1 cut(s) 507
FspBI CTAG 1 cut(s) 573
GluI GCNGC 1 cut(s) 507
GsaI CCCAGC 2 cut(s) 162, 378
HaeIII GGCC 1 cut(s) 435
Hin1II CATG 4 cut(s) 191, 276, 617, 706
HinfI GANTC 3 cut(s) 643, 648, 746
HphI GGTGA 3 cut(s) 46, 200, 741
Hpy166II GTNNAC 2 cut(s) 539, 716
Hpy188III TCNNGA 2 cut(s) 513, 640
Hpy8I GTNNAC 2 cut(s) 539, 716
Hpy99I CGWCG 1 cut(s) 125
HpyAV CCTTC 3 cut(s) 256, 552, 717
HpyCH4III ACNGT 1 cut(s) 488
HpyCH4V TGCA 2 cut(s) 90, 506
HpyF10VI GCNNNNNNNGC 3 cut(s) 242, 330, 681
HpyF3I CTNAG 3 cut(s) 259, 491, 638
Hsp92II CATG 4 cut(s) 191, 276, 617, 706
Ksp22I TGATCA 1 cut(s) 610
Kzo9I GATC 4 cut(s) 104, 610, 767, 794
LguI GCTCTTC 1 cut(s) 292
LmnI GCTCC 4 cut(s) 53, 321, 376, 672
Lsp1109I GCAGC 1 cut(s) 518
LweI GCATC 2 cut(s) 518, 706
MaeI CTAG 1 cut(s) 573
MaeIII GTNAC 1 cut(s) 34
MalI GATC 4 cut(s) 106, 612, 769, 796
MboI GATC 4 cut(s) 104, 610, 767, 794
MboII GAAGA 7 cut(s) 99, 102, 128, 161, 190, 309, 476
MflI RGATCY 1 cut(s) 794
MluCI AATT 5 cut(s) 59, 348, 562, 709, 780
MlyI GAGTC 1 cut(s) 637
MnlI CCTC 6 cut(s) 256, 405, 460, 486, 535, 754
MseI TTAA 3 cut(s) 498, 567, 785
MslI CAYNNNNRTG 1 cut(s) 271
MspA1I CMGCKG 1 cut(s) 158
MwoI GCNNNNNNNGC 3 cut(s) 242, 330, 681
NdeII GATC 4 cut(s) 104, 610, 767, 794
NlaIII CATG 4 cut(s) 191, 276, 617, 706
NlaIV GGNNCC 1 cut(s) 372
NmuCI GTSAC 1 cut(s) 34
NspI RCATGY 1 cut(s) 706
NspV TTCGAA 1 cut(s) 56
PciI ACATGT 1 cut(s) 702
PciSI GCTCTTC 1 cut(s) 292
PfeI GAWTC 2 cut(s) 648, 746
PkrI GCNGC 1 cut(s) 508
PleI GAGTC 1 cut(s) 637
PpsI GAGTC 1 cut(s) 637
PscI ACATGT 1 cut(s) 702
PsiI TTATAA 1 cut(s) 173
PspFI CCCAGC 2 cut(s) 158, 374
PspN4I GGNNCC 1 cut(s) 372
PspPI GGNCC 1 cut(s) 433
PsrI GAACNNNNNNTAC 2 cut(s) 183, 215
PstNI CAGNNNCTG 1 cut(s) 87
PsuI RGATCY 1 cut(s) 794
PvuII CAGCTG 1 cut(s) 158
RsaI GTAC 1 cut(s) 346
RsaNI GTAC 1 cut(s) 345
RseI CAYNNNNRTG 1 cut(s) 271
SapI GCTCTTC 1 cut(s) 292
SaqAI TTAA 3 cut(s) 498, 567, 785
SatI GCNGC 1 cut(s) 507
Sau3AI GATC 4 cut(s) 104, 610, 767, 794
Sau96I GGNCC 1 cut(s) 433
SchI GAGTC 1 cut(s) 637
SetI ASST 8 cut(s) 160, 304, 416, 527, 544, 578, 677, 765
SfaNI GCATC 2 cut(s) 518, 706
SfcI CTRYAG 1 cut(s) 532
SfuI TTCGAA 1 cut(s) 56
SmiMI CAYNNNNRTG 1 cut(s) 271
SmlI CTYRAG 1 cut(s) 685
SmoI CTYRAG 1 cut(s) 685
Sse9I AATT 5 cut(s) 59, 348, 562, 709, 780
SspMI CTAG 1 cut(s) 573
StyI CCWWGG 3 cut(s) 231, 384, 572
TaaI ACNGT 1 cut(s) 488
TaqI TCGA 6 cut(s) 56, 103, 123, 410, 454, 646
TaqII GACCGA 1 cut(s) 396
TasI AATT 5 cut(s) 59, 348, 562, 709, 780
TfiI GAWTC 2 cut(s) 648, 746
Tru1I TTAA 3 cut(s) 498, 567, 785
Tru9I TTAA 3 cut(s) 498, 567, 785
TscAI CASTG 1 cut(s) 92
TseFI GTSAC 1 cut(s) 34
TseI GCWGC 1 cut(s) 506
Tsp45I GTSAC 1 cut(s) 34
TspDTI ATGAA 5 cut(s) 204, 261, 303, 534, 801
TspRI CASTG 1 cut(s) 92
XapI RAATTY 2 cut(s) 59, 780
XceI RCATGY 1 cut(s) 706
XmaJI CCTAGG 1 cut(s) 572
XspI CTAG 1 cut(s) 573
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.