pycom13g13850

DnaJ molecular chaperone homology domain

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
pyrus_communis
Chr13
OG0014068
Physical Location & Seq
Reverse (-)
9846315 .. 9848196
1882 bp
Loading structure...
UTR
Exon/CDS
Intron
pycom13g13850.4

Sequence Viewer

Length: 987 bp
ATGTCGGGGGCACCAACTGATATCCACTTTCAAAATTTACACCCGCAAATTTTGCTCTTTTTTCTTAACCGCTCCACCTCCCTGTCATCACTCCTCCCTCTCTCTCTTCCCTCCCTCTCTCTCTCTCTCCAAACCGATCACAACAATTCAATTTCAAGCATTTTCTCATTCTTTTCCATTTTCTCCGTTGGAGAGAAAAAAATGGGGCAGGATTCTGATTTGAAATCCCAGCTGGTGACTGAGATTTGCTCCGTTTCCACGCGCTCCATTGCCTGCTCTCACAGGCATGGCAGCAGCAGCAGCCCTGTTCATTCGTCTTTCGTGGATTGGTATCGCCTCCTTCGAGTACCTTTACAACTTCATCCAGATAAGAACAAACACCCAAAAGCTGAAATTGCATTCAAGCTTGTTTCTGAGGCATATTCATGTCTCTCAGATGATGCAAAAAGAAGAGTTTTTGACTTGGAGAGATGGAGGAGGTTCTGCTCTGAGTGCGGCACAATCCCCTACACAACAACCCACCACAACTCCCCAAGCACTGCCAATCCCAATCCTTCTTCACATCACAAGCCTTACAATCCCACAAATTCAAGACCTTGCAAAGTAACCAAGGGACTGAAAGATATCAGAAACAGATTCAGAGAGGAGGTAAGGGTGATAGAAAGCTGCTTGAAGGCCAATGCAGCTGCAGGAACACCAGGAAAGCAATCCTCCTCCTCACTATGTACTCCACCTGCTGCTTTTGATGCGTTGCAGAGCAGGCTCCCTAAGGAATCCCCTGTCTTCAACCCATCTGACCATAAGGTTCAGGGATACCCTCATCTTCGGGCTCGAATTTACGAGAAGCCGAAGAACTTTTGGCAGTTGAGAACTGGGCATCATGTACTGAATTATGAGCAGGGTAGAGGTGGTTATGATTCTCCGGTGTATGAGGTCAGATCAGATAGTGGAATGTTTAAGAGTAGGTCAACTTGTGTTCGTTCATGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
DnaJ

Protein Analysis

329

Amino Acids

36.85

Weight (kDa)

9.52

Isoelectric Point (pI)

68.71

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0014068)

Species Orthologous Gene IDs
arabidopsis_thaliana AT3G06778
fragaria_vesca FvH4_4g18890
malus_domestica MD13G1162300.v1.1 MD16G1162100.v1.1
prunus_persica Prupe.1G129600_v2.0.a1
pyrus_communis pycom13g13850 pycom16g13750
rosa_chinensis RchiOBHm_Chr4g0423791
rosa_multiflora Rmu_co8479069.1_g000001
rosa_roxburghii Rroxscaffold_5G00365900
rosa_rugosa Rorug04G0190600 Rorug04G0190700
rosa_samantha Rh4AG250100 Rh4BG255300 Rh4CG263300 Rh4DG249600
rosa_wichuraiana Rw4G021410

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AarI CACCTGC 1 cut(s) 742
Acc36I ACCTGC 1 cut(s) 742
AccB1I GGYRCC 1 cut(s) 10
AccBSI CCGCTC 1 cut(s) 72
AccII CGCG 1 cut(s) 262
AciI CCGC 3 cut(s) 44, 70, 495
AcsI RAATTY 4 cut(s) 34, 48, 586, 834
AfaI GTAC 3 cut(s) 348, 727, 885
AgsI TTSAA 8 cut(s) 32, 150, 156, 223, 403, 591, 673, 787
AjnI CCWGG 1 cut(s) 697
AluBI AGCT 5 cut(s) 232, 389, 406, 666, 686
AluI AGCT 5 cut(s) 232, 389, 406, 666, 686
Alw26I GTCTC 1 cut(s) 434
AoxI GGCC 1 cut(s) 675
ApeKI GCWGC 8 cut(s) 291, 294, 297, 300, 666, 683, 686, 737
ApoI RAATTY 4 cut(s) 34, 48, 586, 834
AspLEI GCGC 1 cut(s) 264
AsuHPI GGTGA 2 cut(s) 247, 667
AxyI CCTNAGG 1 cut(s) 768
BaeGI GKGCMC 1 cut(s) 13
BanI GGYRCC 1 cut(s) 10
BanII GRGCYC 1 cut(s) 832
BbsI GAAGAC 1 cut(s) 775
BbvI GCAGC 8 cut(s) 303, 306, 309, 312, 653, 673, 695, 724
BccI CCATC 2 cut(s) 465, 799
BciT130I CCWGG 1 cut(s) 699
BciVI GTATCC 1 cut(s) 806
BcoDI GTCTC 1 cut(s) 434
BfmI CTRYAG 1 cut(s) 687
BfuAI ACCTGC 1 cut(s) 742
BfuI GTATCC 1 cut(s) 806
BisI GCNGC 9 cut(s) 292, 295, 298, 301, 496, 667, 684, 687, 738
BlsI GCNGC 9 cut(s) 293, 296, 299, 302, 497, 668, 685, 688, 739
Bme1390I CCNGG 1 cut(s) 699
BmiI GGNNCC 2 cut(s) 12, 764
BmrFI CCNGG 1 cut(s) 699
BmrI ACTGGG 1 cut(s) 882
BmsI GCATC 3 cut(s) 430, 736, 886
BmuI ACTGGG 1 cut(s) 882
BpiI GAAGAC 1 cut(s) 775
BplI GAGNNNNNCTC 2 cut(s) 233, 265
BsaBI GATNNNNATC 1 cut(s) 330
BsaJI CCNNGG 1 cut(s) 609
BsaWI WCCGGW 1 cut(s) 922
BsaXI ACNNNNNCTCC 2 cut(s) 512, 542
Bse1I ACTGG 1 cut(s) 877
Bse21I CCTNAGG 1 cut(s) 768
Bse3DI GCAATG 1 cut(s) 267
Bse8I GATNNNNATC 1 cut(s) 330
BseBI CCWGG 1 cut(s) 699
BseDI CCNNGG 1 cut(s) 609
BseGI GGATG 1 cut(s) 361
BseJI GATNNNNATC 1 cut(s) 330
BseMI GCAATG 1 cut(s) 267
BseMII CTCAG 4 cut(s) 231, 405, 447, 480
BseNI ACTGG 1 cut(s) 877
BseRI GAGGAG 5 cut(s) 83, 490, 659, 703, 706
BseSI GKGCMC 1 cut(s) 13
BseXI GCAGC 8 cut(s) 303, 306, 309, 312, 653, 673, 695, 724
BseYI CCCAGC 1 cut(s) 228
Bsh1236I CGCG 1 cut(s) 262
BshFI GGCC 1 cut(s) 677
BshNI GGYRCC 1 cut(s) 10
BsiSI CCGG 1 cut(s) 923
BslFI GGGAC 1 cut(s) 627
BsmAI GTCTC 1 cut(s) 434
BsmFI GGGAC 1 cut(s) 627
BsmI GAATGC 1 cut(s) 398
BsnI GGCC 1 cut(s) 677
Bsp1286I GDGCHC 2 cut(s) 13, 832
Bsp143I GATC 2 cut(s) 136, 938
BspACI CCGC 3 cut(s) 44, 70, 495
BspANI GGCC 1 cut(s) 677
BspCNI CTCAG 4 cut(s) 232, 406, 446, 481
BspFNI CGCG 1 cut(s) 262
BspHI TCATGA 1 cut(s) 983
BspLI GGNNCC 2 cut(s) 12, 764
BspMAI CTGCAG 1 cut(s) 691
BspMI ACCTGC 1 cut(s) 742
BspT107I GGYRCC 1 cut(s) 10
BsrBI CCGCTC 1 cut(s) 72
BsrDI GCAATG 1 cut(s) 267
BsrI ACTGG 1 cut(s) 877
BssECI CCNNGG 1 cut(s) 609
BssMI GATC 2 cut(s) 136, 938
BssT1I CCWWGG 1 cut(s) 609
Bst2UI CCWGG 1 cut(s) 699
Bst6I CTCTTC 2 cut(s) 111, 445
BstAPI GCANNNNNTGC 1 cut(s) 52
BstC8I GCNNGC 2 cut(s) 274, 761
BstDEI CTNAG 5 cut(s) 240, 414, 433, 489, 768
BstF5I GGATG 1 cut(s) 361
BstFNI CGCG 1 cut(s) 262
BstHHI GCGC 1 cut(s) 264
BstKTI GATC 2 cut(s) 139, 941
BstMAI GTCTC 1 cut(s) 434
BstMBI GATC 2 cut(s) 136, 938
BstMWI GCNNNNNNNGC 8 cut(s) 52, 297, 300, 395, 492, 683, 746, 760
BstNI CCWGG 1 cut(s) 699
BstSCI CCNGG 1 cut(s) 697
BstSFI CTRYAG 1 cut(s) 687
BstSLI GKGCMC 1 cut(s) 13
BstUI CGCG 1 cut(s) 262
BstV1I GCAGC 8 cut(s) 303, 306, 309, 312, 653, 673, 695, 724
BstV2I GAAGAC 1 cut(s) 775
Bsu36I CCTNAGG 1 cut(s) 768
BsuI GTATCC 1 cut(s) 806
BsuRI GGCC 1 cut(s) 677
BtsCI GGATG 1 cut(s) 361
BtsI GCAGTG 1 cut(s) 537
BtsIMutI CAGTG 1 cut(s) 537
BveI ACCTGC 1 cut(s) 742
Cac8I GCNNGC 2 cut(s) 274, 761
CciI TCATGA 1 cut(s) 983
CfoI GCGC 1 cut(s) 264
Csp6I GTAC 3 cut(s) 347, 726, 884
CviAII CATG 4 cut(s) 287, 426, 881, 984
CviQI GTAC 3 cut(s) 347, 726, 884
DdeI CTNAG 5 cut(s) 240, 414, 433, 489, 768
DpnI GATC 2 cut(s) 138, 940
DpnII GATC 2 cut(s) 136, 938
Eam1104I CTCTTC 2 cut(s) 111, 445
EarI CTCTTC 2 cut(s) 111, 445
Eco130I CCWWGG 1 cut(s) 609
Eco24I GRGCYC 1 cut(s) 832
Eco32I GATATC 2 cut(s) 22, 625
Eco81I CCTNAGG 1 cut(s) 768
EcoRII CCWGG 1 cut(s) 697
EcoRV GATATC 2 cut(s) 22, 625
EcoT14I CCWWGG 1 cut(s) 609
EcoT38I GRGCYC 1 cut(s) 832
ErhI CCWWGG 1 cut(s) 609
FaeI CATG 4 cut(s) 290, 429, 884, 987
FaqI GGGAC 1 cut(s) 627
FatI CATG 4 cut(s) 286, 425, 880, 983
FauI CCCGC 1 cut(s) 51
Fnu4HI GCNGC 9 cut(s) 292, 295, 298, 301, 496, 667, 684, 687, 738
FokI GGATG 1 cut(s) 348
FriOI GRGCYC 1 cut(s) 832
Fsp4HI GCNGC 9 cut(s) 292, 295, 298, 301, 496, 667, 684, 687, 738
GlaI GCGC 1 cut(s) 263
GluI GCNGC 9 cut(s) 292, 295, 298, 301, 496, 667, 684, 687, 738
GsaI CCCAGC 1 cut(s) 232
HaeIII GGCC 1 cut(s) 677
HapII CCGG 1 cut(s) 923
HhaI GCGC 1 cut(s) 264
Hin1II CATG 4 cut(s) 290, 429, 884, 987
Hin6I GCGC 1 cut(s) 262
HinP1I GCGC 1 cut(s) 262
HincII GTYRAC 1 cut(s) 969
HindII GTYRAC 1 cut(s) 969
HindIII AAGCTT 1 cut(s) 404
HinfI GANTC 4 cut(s) 212, 636, 773, 917
HpaII CCGG 1 cut(s) 923
HphI GGTGA 2 cut(s) 247, 667
Hpy166II GTNNAC 1 cut(s) 969
Hpy188I TCNGA 9 cut(s) 217, 415, 436, 490, 629, 641, 796, 938, 943
Hpy188III TCNNGA 3 cut(s) 365, 591, 984
Hpy8I GTNNAC 1 cut(s) 969
HpyAV CCTTC 3 cut(s) 350, 564, 667
HpyCH4V TGCA 6 cut(s) 398, 443, 600, 683, 689, 754
HpyF10VI GCNNNNNNNGC 8 cut(s) 52, 297, 300, 395, 492, 683, 746, 760
HpyF3I CTNAG 5 cut(s) 240, 414, 433, 489, 768
Hsp92II CATG 4 cut(s) 290, 429, 884, 987
HspAI GCGC 1 cut(s) 262
Kzo9I GATC 2 cut(s) 136, 938
LmnI GCTCC 4 cut(s) 77, 254, 269, 768
Lsp1109I GCAGC 8 cut(s) 303, 306, 309, 312, 653, 673, 695, 724
LweI GCATC 3 cut(s) 430, 736, 886
MaeIII GTNAC 2 cut(s) 235, 604
MalI GATC 2 cut(s) 138, 940
MbiI CCGCTC 1 cut(s) 72
MboI GATC 2 cut(s) 136, 938
MboII GAAGA 6 cut(s) 98, 462, 549, 775, 815, 862
MhlI GDGCHC 2 cut(s) 13, 832
MluCI AATT 8 cut(s) 34, 48, 145, 150, 393, 586, 834, 889
MmeI TCCRAC 1 cut(s) 169
MseI TTAA 2 cut(s) 66, 957
MslI CAYNNNNRTG 2 cut(s) 285, 424
MspA1I CMGCKG 2 cut(s) 232, 686
MspI CCGG 1 cut(s) 923
MspR9I CCNGG 1 cut(s) 699
Mva1269I GAATGC 1 cut(s) 398
MvaI CCWGG 1 cut(s) 699
MvnI CGCG 1 cut(s) 262
MwoI GCNNNNNNNGC 8 cut(s) 52, 297, 300, 395, 492, 683, 746, 760
NdeII GATC 2 cut(s) 136, 938
NlaIII CATG 4 cut(s) 290, 429, 884, 987
NlaIV GGNNCC 2 cut(s) 12, 764
NmuCI GTSAC 1 cut(s) 235
PagI TCATGA 1 cut(s) 983
PaqCI CACCTGC 1 cut(s) 742
PcsI WCGNNNNNNNCGW 1 cut(s) 340
PctI GAATGC 1 cut(s) 398
PfeI GAWTC 4 cut(s) 212, 636, 773, 917
PkrI GCNGC 9 cut(s) 293, 296, 299, 302, 497, 668, 685, 688, 739
Psp6I CCWGG 1 cut(s) 697
PspFI CCCAGC 1 cut(s) 228
PspGI CCWGG 1 cut(s) 697
PspN4I GGNNCC 2 cut(s) 12, 764
PstI CTGCAG 1 cut(s) 691
PvuII CAGCTG 2 cut(s) 232, 686
RsaI GTAC 3 cut(s) 348, 727, 885
RsaNI GTAC 3 cut(s) 347, 726, 884
RseI CAYNNNNRTG 2 cut(s) 285, 424
SaqAI TTAA 2 cut(s) 66, 957
SatI GCNGC 9 cut(s) 292, 295, 298, 301, 496, 667, 684, 687, 738
Sau3AI GATC 2 cut(s) 136, 938
ScrFI CCNGG 1 cut(s) 699
SduI GDGCHC 2 cut(s) 13, 832
SfaNI GCATC 3 cut(s) 430, 736, 886
SfcI CTRYAG 1 cut(s) 687
SmiMI CAYNNNNRTG 2 cut(s) 285, 424
Sse9I AATT 8 cut(s) 34, 48, 145, 150, 393, 586, 834, 889
SsiI CCGC 3 cut(s) 44, 70, 495
StyD4I CCNGG 1 cut(s) 697
StyI CCWWGG 1 cut(s) 609
TaqI TCGA 2 cut(s) 343, 832
TasI AATT 8 cut(s) 34, 48, 145, 150, 393, 586, 834, 889
TatI WGTACW 2 cut(s) 725, 883
TauI GCSGC 1 cut(s) 498
TfiI GAWTC 4 cut(s) 212, 636, 773, 917
Tru1I TTAA 2 cut(s) 66, 957
Tru9I TTAA 2 cut(s) 66, 957
TscAI CASTG 1 cut(s) 544
TseFI GTSAC 1 cut(s) 235
TseI GCWGC 8 cut(s) 291, 294, 297, 300, 666, 683, 686, 737
Tsp45I GTSAC 1 cut(s) 235
TspDTI ATGAA 4 cut(s) 299, 350, 414, 972
TspGWI ACGGA 2 cut(s) 175, 241
TspRI CASTG 1 cut(s) 544
XapI RAATTY 4 cut(s) 34, 48, 586, 834
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.