Rroxscaffold_5G00365900

DnaJ molecular chaperone homology domain

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_roxburghii
GWHEROQ00000005
OG0014068
Physical Location & Seq
Forward (+)
47621846 .. 47623233
1388 bp
Loading structure...
UTR
Exon/CDS
Intron
Rroxscaffold_5G00365900.1

Sequence Viewer

Length: 831 bp
ATGGAACATGAATCTGACTTCAAATCGCAGTTGGTGACAGAGATTTGCTCCATTTCGAAATTCTCCATTGCCTGTTCTCATAGGCATTGCACCAGCCCTGTTCGATCTTCTTCACCTTTCGTCGATTGGTATCGTCTTCTTGGGGTGGAAGAAGCAGCTGGGATTGATGTTATAAGAAAGAGATACCATGAACTTGCTTTACAACTTCACCCAGACAAGAACAAGCATGCCAAGGCTGAAGTTGCCTTCAAACTTGTCTCAGAGGCATATTCATGTCTCTCTGATCATGAAAATAGAAGAGCTTTTGACTTGGAGAGATGGAGCAAGTTCTGCTTTGAGTGTGGTACAATCCCCTACACAACCTGCAAGACTCCCAGCAATGCCAAGGCTTCAGAACACAAGGGTTGGAATCCCACAAGCAGTTCGAGGTCTTGTAAAGTTATCAAGGGACTGAAAGATATGAGAAACCGGTTTAGAGAAGAGGCAAGAGTGATCGAAAACTGTCTGAGGGCTAATAATGCAGCATCAAGAAATGAATCCTCGCTCTTCAGTCCAACTTCTTATATGTTTCAGAGCAATTCCAATCCTAGGTTGAGCAGGGAAACCCCTGTTTTCAACCCATCTGATCATGTGGTTCAAGGATATCCCCATCTCAGGACTCGAATTTACGACAAAGATAAATCTCGGAGCTTTTGGTGCTTCAGAACAGGGCATCATATATTGAATTATGAACAAGGAAGGGCTAGTAGAGCTACATATGATTCTCCAGTATTTGAGGTCAGATCAGAAAGGGGAATTTTGAAGAGTAGATCTACTTGTGTTCGTTCGTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
DnaJ

Protein Analysis

276

Amino Acids

31.8

Weight (kDa)

9.32

Isoelectric Point (pI)

67.27

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
DnaJ PF00226 42 - 103 4.2e-20 DnaJ domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
Loading...
Style Settings
Image
Tree File
Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0014068)

Species Orthologous Gene IDs
arabidopsis_thaliana AT3G06778
fragaria_vesca FvH4_4g18890
malus_domestica MD13G1162300.v1.1 MD16G1162100.v1.1
prunus_persica Prupe.1G129600_v2.0.a1
pyrus_communis pycom13g13850 pycom16g13750
rosa_chinensis RchiOBHm_Chr4g0423791
rosa_multiflora Rmu_co8479069.1_g000001
rosa_roxburghii Rroxscaffold_5G00365900
rosa_rugosa Rorug04G0190600 Rorug04G0190700
rosa_samantha Rh4AG250100 Rh4BG255300 Rh4CG263300 Rh4DG249600
rosa_wichuraiana Rw4G021410

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 1 cut(s) 173
Acc36I ACCTGC 1 cut(s) 371
AcsI RAATTY 3 cut(s) 59, 663, 795
AcuI CTGAAG 4 cut(s) 258, 375, 532, 685
AfaI GTAC 1 cut(s) 346
AfiI CCNNNNNNNGG 2 cut(s) 588, 654
AgeI ACCGGT 1 cut(s) 468
AgsI TTSAA 6 cut(s) 22, 250, 616, 638, 724, 802
AluBI AGCT 4 cut(s) 158, 302, 690, 752
AluI AGCT 4 cut(s) 158, 302, 690, 752
Alw26I GTCTC 2 cut(s) 262, 281
ApeKI GCWGC 2 cut(s) 155, 521
ApoI RAATTY 3 cut(s) 59, 663, 795
AsiGI ACCGGT 1 cut(s) 468
AspA2I CCTAGG 1 cut(s) 587
AsuHPI GGTGA 3 cut(s) 46, 105, 200
AsuII TTCGAA 1 cut(s) 56
AvrII CCTAGG 1 cut(s) 587
BbsI GAAGAC 1 cut(s) 128
BbvI GCAGC 2 cut(s) 167, 533
BccI CCATC 3 cut(s) 312, 628, 657
BclI TGATCA 2 cut(s) 283, 625
BcoDI GTCTC 2 cut(s) 262, 281
BfaI CTAG 2 cut(s) 588, 744
BfuAI ACCTGC 1 cut(s) 371
BglII AGATCT 1 cut(s) 809
BisI GCNGC 2 cut(s) 156, 522
BlnI CCTAGG 1 cut(s) 587
BlsI GCNGC 2 cut(s) 157, 523
BmsI GCATC 2 cut(s) 533, 721
BpiI GAAGAC 1 cut(s) 128
BplI GAGNNNNNCTC 2 cut(s) 32, 64
BpmI CTGGAG 1 cut(s) 750
Bpu14I TTCGAA 1 cut(s) 56
BsaBI GATNNNNATC 1 cut(s) 129
BsaJI CCNNGG 3 cut(s) 231, 384, 587
BsaWI WCCGGW 1 cut(s) 468
Bsc4I CCNNNNNNNGG 2 cut(s) 588, 654
Bse118I RCCGGY 1 cut(s) 468
Bse1I ACTGG 1 cut(s) 767
Bse3DI GCAATG 3 cut(s) 66, 85, 385
Bse8I GATNNNNATC 1 cut(s) 129
BseDI CCNNGG 3 cut(s) 231, 384, 587
BseJI GATNNNNATC 1 cut(s) 129
BseLI CCNNNNNNNGG 2 cut(s) 588, 654
BseMI GCAATG 3 cut(s) 66, 85, 385
BseMII CTCAG 3 cut(s) 273, 497, 667
BseNI ACTGG 1 cut(s) 767
BseXI GCAGC 2 cut(s) 167, 533
BseYI CCCAGC 2 cut(s) 158, 374
BshTI ACCGGT 1 cut(s) 468
BsiSI CCGG 1 cut(s) 469
BslFI GGGAC 1 cut(s) 462
BslI CCNNNNNNNGG 2 cut(s) 588, 654
BsmAI GTCTC 2 cut(s) 262, 281
BsmFI GGGAC 1 cut(s) 462
Bsp119I TTCGAA 1 cut(s) 56
Bsp143I GATC 6 cut(s) 104, 283, 492, 625, 782, 809
BspCNI CTCAG 3 cut(s) 272, 498, 666
BspHI TCATGA 1 cut(s) 286
BspMI ACCTGC 1 cut(s) 371
BspQI GCTCTTC 2 cut(s) 292, 551
BspT104I TTCGAA 1 cut(s) 56
BsrDI GCAATG 3 cut(s) 66, 85, 385
BsrFI RCCGGY 1 cut(s) 468
BsrI ACTGG 1 cut(s) 767
BssAI RCCGGY 1 cut(s) 468
BssECI CCNNGG 3 cut(s) 231, 384, 587
BssMI GATC 6 cut(s) 104, 283, 492, 625, 782, 809
BssT1I CCWWGG 3 cut(s) 231, 384, 587
Bst4CI ACNGT 1 cut(s) 503
Bst6I CTCTTC 4 cut(s) 292, 474, 551, 797
BstAPI GCANNNNNTGC 1 cut(s) 330
BstBI TTCGAA 1 cut(s) 56
BstC8I GCNNGC 1 cut(s) 228
BstDEI CTNAG 3 cut(s) 259, 506, 653
BstKTI GATC 6 cut(s) 107, 286, 495, 628, 785, 812
BstMAI GTCTC 2 cut(s) 262, 281
BstMBI GATC 6 cut(s) 104, 283, 492, 625, 782, 809
BstMWI GCNNNNNNNGC 5 cut(s) 242, 330, 518, 696, 749
BstNSI RCATGY 1 cut(s) 230
BstV1I GCAGC 2 cut(s) 167, 533
BstV2I GAAGAC 1 cut(s) 128
BstX2I RGATCY 1 cut(s) 809
BstYI RGATCY 1 cut(s) 809
BveI ACCTGC 1 cut(s) 371
Cac8I GCNNGC 1 cut(s) 228
CciI TCATGA 1 cut(s) 286
Cfr10I RCCGGY 1 cut(s) 468
Csp6I GTAC 1 cut(s) 345
CspAI ACCGGT 1 cut(s) 468
CviAII CATG 6 cut(s) 8, 188, 227, 273, 287, 629
CviJI RGCY 9 cut(s) 96, 158, 236, 302, 389, 512, 690, 743, 752
CviKI_1 RGCY 9 cut(s) 96, 158, 236, 302, 389, 512, 690, 743, 752
CviQI GTAC 1 cut(s) 345
DdeI CTNAG 3 cut(s) 259, 506, 653
DpnI GATC 6 cut(s) 106, 285, 494, 627, 784, 811
DpnII GATC 6 cut(s) 104, 283, 492, 625, 782, 809
Eam1104I CTCTTC 4 cut(s) 292, 474, 551, 797
EarI CTCTTC 4 cut(s) 292, 474, 551, 797
Eco130I CCWWGG 3 cut(s) 231, 384, 587
Eco32I GATATC 1 cut(s) 644
Eco57I CTGAAG 4 cut(s) 258, 375, 532, 685
EcoRV GATATC 1 cut(s) 644
EcoT14I CCWWGG 3 cut(s) 231, 384, 587
ErhI CCWWGG 3 cut(s) 231, 384, 587
FaeI CATG 6 cut(s) 11, 191, 230, 276, 290, 632
FalI AAGNNNNNCTT 2 cut(s) 317, 349
FaqI GGGAC 1 cut(s) 462
FatI CATG 6 cut(s) 7, 187, 226, 272, 286, 628
FauNDI CATATG 1 cut(s) 757
FbaI TGATCA 2 cut(s) 283, 625
Fnu4HI GCNGC 2 cut(s) 156, 522
Fsp4HI GCNGC 2 cut(s) 156, 522
FspBI CTAG 2 cut(s) 588, 744
GluI GCNGC 2 cut(s) 156, 522
GsaI CCCAGC 2 cut(s) 162, 378
GsuI CTGGAG 1 cut(s) 750
HapII CCGG 1 cut(s) 469
Hin1II CATG 6 cut(s) 11, 191, 230, 276, 290, 632
HinfI GANTC 6 cut(s) 11, 370, 409, 536, 658, 761
HpaII CCGG 1 cut(s) 469
HphI GGTGA 3 cut(s) 46, 105, 200
Hpy188III TCNNGA 3 cut(s) 287, 528, 655
Hpy99I CGWCG 1 cut(s) 125
HpyAV CCTTC 2 cut(s) 256, 732
HpyCH4III ACNGT 1 cut(s) 503
HpyCH4V TGCA 3 cut(s) 90, 366, 521
HpyF10VI GCNNNNNNNGC 5 cut(s) 242, 330, 518, 696, 749
HpyF3I CTNAG 3 cut(s) 259, 506, 653
Hsp92II CATG 6 cut(s) 11, 191, 230, 276, 290, 632
Ksp22I TGATCA 2 cut(s) 283, 625
Kzo9I GATC 6 cut(s) 104, 283, 492, 625, 782, 809
LguI GCTCTTC 2 cut(s) 292, 551
LmnI GCTCC 3 cut(s) 53, 321, 687
Lsp1109I GCAGC 2 cut(s) 167, 533
LweI GCATC 2 cut(s) 533, 721
MaeI CTAG 2 cut(s) 588, 744
MaeIII GTNAC 1 cut(s) 34
MalI GATC 6 cut(s) 106, 285, 494, 627, 784, 811
MboI GATC 6 cut(s) 104, 283, 492, 625, 782, 809
MboII GAAGA 8 cut(s) 99, 102, 128, 161, 309, 491, 538, 814
MflI RGATCY 1 cut(s) 809
MluCI AATT 5 cut(s) 59, 577, 663, 724, 795
MlyI GAGTC 2 cut(s) 364, 652
MmeI TCCRAC 2 cut(s) 386, 578
MnlI CCTC 6 cut(s) 256, 420, 475, 501, 550, 769
MslI CAYNNNNRTG 1 cut(s) 271
MspA1I CMGCKG 1 cut(s) 158
MspI CCGG 1 cut(s) 469
MwoI GCNNNNNNNGC 5 cut(s) 242, 330, 518, 696, 749
NdeI CATATG 1 cut(s) 757
NdeII GATC 6 cut(s) 104, 283, 492, 625, 782, 809
NlaIII CATG 6 cut(s) 11, 191, 230, 276, 290, 632
NmuCI GTSAC 1 cut(s) 34
NspI RCATGY 1 cut(s) 230
NspV TTCGAA 1 cut(s) 56
PaeI GCATGC 1 cut(s) 230
PagI TCATGA 1 cut(s) 286
PciSI GCTCTTC 2 cut(s) 292, 551
PfeI GAWTC 4 cut(s) 11, 409, 536, 761
PinAI ACCGGT 1 cut(s) 468
PkrI GCNGC 2 cut(s) 157, 523
PleI GAGTC 2 cut(s) 364, 652
PpsI GAGTC 2 cut(s) 364, 652
PsiI TTATAA 1 cut(s) 173
PspFI CCCAGC 2 cut(s) 158, 374
PsrI GAACNNNNNNTAC 2 cut(s) 183, 215
PsuI RGATCY 1 cut(s) 809
PvuII CAGCTG 1 cut(s) 158
RsaI GTAC 1 cut(s) 346
RsaNI GTAC 1 cut(s) 345
RseI CAYNNNNRTG 1 cut(s) 271
SapI GCTCTTC 2 cut(s) 292, 551
SatI GCNGC 2 cut(s) 156, 522
Sau3AI GATC 6 cut(s) 104, 283, 492, 625, 782, 809
SchI GAGTC 2 cut(s) 364, 652
SetI ASST 9 cut(s) 118, 160, 304, 365, 431, 593, 692, 754, 780
SfaNI GCATC 2 cut(s) 533, 721
SfuI TTCGAA 1 cut(s) 56
SmiMI CAYNNNNRTG 1 cut(s) 271
SphI GCATGC 1 cut(s) 230
Sse9I AATT 5 cut(s) 59, 577, 663, 724, 795
SspMI CTAG 2 cut(s) 588, 744
StyI CCWWGG 3 cut(s) 231, 384, 587
TaaI ACNGT 1 cut(s) 503
TaqI TCGA 6 cut(s) 56, 103, 123, 425, 495, 661
TasI AATT 5 cut(s) 59, 577, 663, 724, 795
TfiI GAWTC 4 cut(s) 11, 409, 536, 761
TseFI GTSAC 1 cut(s) 34
TseI GCWGC 2 cut(s) 155, 521
Tsp45I GTSAC 1 cut(s) 34
TspDTI ATGAA 6 cut(s) 24, 204, 261, 303, 549, 744
XapI RAATTY 3 cut(s) 59, 663, 795
XceI RCATGY 1 cut(s) 230
XmaJI CCTAGG 1 cut(s) 587
XspI CTAG 2 cut(s) 588, 744
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.