Rorug04G0190600

DnaJ molecular chaperone homology domain

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_rugosa
GWHBQTZ00000004
OG0014068
Physical Location & Seq
Reverse (-)
33058446 .. 33059545
1100 bp
Loading structure...
UTR
Exon/CDS
Intron
Rorug04G0190600.1

Sequence Viewer

Length: 723 bp
ATGTCTATAACCAAAGATGTTGGTTCCAGTTCTCAAGTGCAGGAAGTGGAGTTTAAGAATGATAAGAACAGCAACAAGGATGCAGGTGGTGAACCAAGCCTACATCAACATGACGAAAATGATAAGCTTAAAGATGAGGTTGATCCAGATGAAGAGGATGAGCTTGCCACATTCAAATGTGACAAAGAATTGGTTCTTGGCCCTAAGTTTTCTCTCAAGGAGCAGCTTGAGAAGGATAAAGATGATGAGAGTTTGAGGAAATGGAAGCAGCAACTTCTTGGGAGTGTTGATCTCTCTTCACTAGATGTTGGAGAGAGTAAAGAAGCAGAAGTGAGGATTTTAAGTATGACATTGATGTTCCAGGAGCGGCCTGAACTTGTGCTGCCGATTCCATTCACCAACAAACCAAAGAGCAATCTTTTCACACTCAAAGGAGGAAGCAAGTTCCGAACCAAATTCACATTTACTGTCTCAAAAAACATTGTCTCAGGCCTCATGTTCACCGCCTCAATCTGGAAGACTGGTGTCAAAGTGCACAGTTCAAAAAGAATGCTTGGAACCTTTAGTCCTCGACCAGATCCTTATACGTATGAAACCGAAGAAGATACTACCCCTTCAGGCATGCTTGCAAGGGGCAAGTATTTTGTGAGAATAAAATTTCTGGATGATCATGGAAAATGCTATTTGGATGCTAGTTACTACTTTGAAATCCAGAAGAACTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
DnaJ

Protein Analysis

240

Amino Acids

27.36

Weight (kDa)

5.56

Isoelectric Point (pI)

32.22

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Rho_GDI PF02115 53 - 240 5.5e-71 RHO protein GDP dissociation inhibitor
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0014068)

Species Orthologous Gene IDs
arabidopsis_thaliana AT3G06778
fragaria_vesca FvH4_4g18890
malus_domestica MD13G1162300.v1.1 MD16G1162100.v1.1
prunus_persica Prupe.1G129600_v2.0.a1
pyrus_communis pycom13g13850 pycom16g13750
rosa_chinensis RchiOBHm_Chr4g0423791
rosa_multiflora Rmu_co8479069.1_g000001
rosa_roxburghii Rroxscaffold_5G00365900
rosa_rugosa Rorug04G0190600 Rorug04G0190700
rosa_samantha Rh4AG250100 Rh4BG255300 Rh4CG263300 Rh4DG249600
rosa_wichuraiana Rw4G021410

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AarI CACCTGC 1 cut(s) 74
Acc36I ACCTGC 1 cut(s) 74
AccBSI CCGCTC 1 cut(s) 367
AciI CCGC 2 cut(s) 367, 504
AclWI GGATC 2 cut(s) 137, 572
AcsI RAATTY 2 cut(s) 455, 656
AcuI CTGAAG 1 cut(s) 600
AfiI CCNNNNNNNGG 1 cut(s) 513
AgsI TTSAA 3 cut(s) 175, 543, 707
AjnI CCWGG 1 cut(s) 360
AjuI GAANNNNNNNTTGG 2 cut(s) 180, 212
AloI GAACNNNNNNTCC 2 cut(s) 550, 582
AluBI AGCT 3 cut(s) 127, 163, 226
AluI AGCT 3 cut(s) 127, 163, 226
Alw21I GWGCWC 1 cut(s) 537
Alw26I GTCTC 2 cut(s) 475, 490
Alw44I GTGCAC 1 cut(s) 533
AlwI GGATC 2 cut(s) 137, 572
AoxI GGCC 3 cut(s) 199, 368, 490
ApaLI GTGCAC 1 cut(s) 533
ApeKI GCWGC 3 cut(s) 223, 268, 382
ApoI RAATTY 2 cut(s) 455, 656
Asp700I GAANNNNTTC 1 cut(s) 192
AspS9I GGNCC 1 cut(s) 200
AsuHPI GGTGA 3 cut(s) 101, 388, 493
BaeGI GKGCMC 1 cut(s) 537
BbsI GAAGAC 1 cut(s) 524
Bbv12I GWGCWC 1 cut(s) 537
BbvI GCAGC 3 cut(s) 235, 280, 369
BciT130I CCWGG 1 cut(s) 362
BclI TGATCA 1 cut(s) 667
BcoDI GTCTC 2 cut(s) 475, 490
BfaI CTAG 3 cut(s) 302, 693, 721
BfuAI ACCTGC 1 cut(s) 74
BisI GCNGC 4 cut(s) 224, 269, 368, 383
BlsI GCNGC 4 cut(s) 225, 270, 369, 384
Bme1390I CCNGG 1 cut(s) 362
BmgT120I GGNCC 1 cut(s) 200
BmiI GGNNCC 2 cut(s) 25, 559
BmrFI CCNGG 1 cut(s) 362
BmsI GCATC 2 cut(s) 70, 679
BoxI GACNNNNGTC 1 cut(s) 524
BpiI GAAGAC 1 cut(s) 524
BpuEI CTTGAG 3 cut(s) 18, 200, 248
BsaAI YACGTR 1 cut(s) 588
Bsc4I CCNNNNNNNGG 1 cut(s) 513
Bse1I ACTGG 2 cut(s) 27, 526
BseBI CCWGG 1 cut(s) 362
BseGI GGATG 4 cut(s) 85, 163, 670, 694
BseLI CCNNNNNNNGG 1 cut(s) 513
BseMII CTCAG 1 cut(s) 501
BseNI ACTGG 2 cut(s) 27, 526
BseSI GKGCMC 1 cut(s) 537
BseXI GCAGC 3 cut(s) 235, 280, 369
BsgI GTGCAG 1 cut(s) 59
BshFI GGCC 3 cut(s) 201, 370, 492
BsiHKAI GWGCWC 1 cut(s) 537
BslI CCNNNNNNNGG 1 cut(s) 513
BsmAI GTCTC 2 cut(s) 475, 490
BsmI GAATGC 1 cut(s) 555
BsnI GGCC 3 cut(s) 201, 370, 492
Bsp1286I GDGCHC 1 cut(s) 537
Bsp143I GATC 4 cut(s) 142, 289, 577, 667
BspACI CCGC 2 cut(s) 367, 504
BspANI GGCC 3 cut(s) 201, 370, 492
BspCNI CTCAG 1 cut(s) 500
BspLI GGNNCC 2 cut(s) 25, 559
BspMI ACCTGC 1 cut(s) 74
BspPI GGATC 2 cut(s) 137, 572
BsrBI CCGCTC 1 cut(s) 367
BsrI ACTGG 2 cut(s) 27, 526
BssMI GATC 4 cut(s) 142, 289, 577, 667
Bst2UI CCWGG 1 cut(s) 362
Bst4CI ACNGT 2 cut(s) 469, 539
Bst6I CTCTTC 2 cut(s) 147, 301
BstBAI YACGTR 1 cut(s) 588
BstC8I GCNNGC 3 cut(s) 165, 623, 627
BstDEI CTNAG 2 cut(s) 204, 487
BstF5I GGATG 4 cut(s) 85, 163, 670, 694
BstKTI GATC 4 cut(s) 145, 292, 580, 670
BstMAI GTCTC 2 cut(s) 475, 490
BstMBI GATC 4 cut(s) 142, 289, 577, 667
BstNI CCWGG 1 cut(s) 362
BstNSI RCATGY 1 cut(s) 625
BstPAI GACNNNNGTC 1 cut(s) 524
BstSCI CCNGG 1 cut(s) 360
BstSLI GKGCMC 1 cut(s) 537
BstSNI TACGTA 1 cut(s) 588
BstV1I GCAGC 3 cut(s) 235, 280, 369
BstV2I GAAGAC 1 cut(s) 524
BstX2I RGATCY 1 cut(s) 577
BstYI RGATCY 1 cut(s) 577
BsuRI GGCC 3 cut(s) 201, 370, 492
BtsCI GGATG 4 cut(s) 85, 163, 670, 694
BveI ACCTGC 1 cut(s) 74
Cac8I GCNNGC 3 cut(s) 165, 623, 627
Cfr13I GGNCC 1 cut(s) 200
CviAII CATG 4 cut(s) 110, 496, 622, 671
CviJI RGCY 7 cut(s) 99, 127, 163, 201, 226, 370, 492
CviKI_1 RGCY 7 cut(s) 99, 127, 163, 201, 226, 370, 492
DdeI CTNAG 2 cut(s) 204, 487
DpnI GATC 4 cut(s) 144, 291, 579, 669
DpnII GATC 4 cut(s) 142, 289, 577, 667
Eam1104I CTCTTC 2 cut(s) 147, 301
EarI CTCTTC 2 cut(s) 147, 301
Eco105I TACGTA 1 cut(s) 588
Eco147I AGGCCT 1 cut(s) 492
Eco57I CTGAAG 1 cut(s) 600
EcoRII CCWGG 1 cut(s) 360
FaeI CATG 4 cut(s) 113, 499, 625, 674
FaiI YATR 8 cut(s) 8, 111, 347, 497, 585, 591, 623, 672
FatI CATG 4 cut(s) 109, 495, 621, 670
FbaI TGATCA 1 cut(s) 667
Fnu4HI GCNGC 4 cut(s) 224, 269, 368, 383
FokI GGATG 4 cut(s) 92, 170, 677, 701
Fsp4HI GCNGC 4 cut(s) 224, 269, 368, 383
FspBI CTAG 3 cut(s) 302, 693, 721
GluI GCNGC 4 cut(s) 224, 269, 368, 383
HaeIII GGCC 3 cut(s) 201, 370, 492
Hin1II CATG 4 cut(s) 113, 499, 625, 674
HindIII AAGCTT 1 cut(s) 125
HinfI GANTC 1 cut(s) 388
HphI GGTGA 3 cut(s) 101, 388, 493
Hpy166II GTNNAC 3 cut(s) 92, 501, 535
Hpy188I TCNGA 1 cut(s) 449
Hpy188III TCNNGA 4 cut(s) 146, 514, 662, 712
Hpy8I GTNNAC 3 cut(s) 92, 501, 535
HpyAV CCTTC 2 cut(s) 226, 624
HpyCH4III ACNGT 2 cut(s) 469, 539
HpyCH4IV ACGT 1 cut(s) 587
HpyCH4V TGCA 4 cut(s) 40, 83, 535, 629
HpyF3I CTNAG 2 cut(s) 204, 487
HpySE526I ACGT 1 cut(s) 587
Hsp92II CATG 4 cut(s) 113, 499, 625, 674
Ksp22I TGATCA 1 cut(s) 667
Kzo9I GATC 4 cut(s) 142, 289, 577, 667
LmnI GCTCC 2 cut(s) 220, 364
Lsp1109I GCAGC 3 cut(s) 235, 280, 369
LweI GCATC 2 cut(s) 70, 679
MaeI CTAG 3 cut(s) 302, 693, 721
MaeII ACGT 1 cut(s) 587
MaeIII GTNAC 2 cut(s) 179, 695
MalI GATC 4 cut(s) 144, 291, 579, 669
MbiI CCGCTC 1 cut(s) 367
MboI GATC 4 cut(s) 142, 289, 577, 667
MboII GAAGA 5 cut(s) 164, 288, 529, 611, 614
MflI RGATCY 1 cut(s) 577
MhlI GDGCHC 1 cut(s) 537
MluCI AATT 3 cut(s) 188, 455, 656
MmeI TCCRAC 1 cut(s) 289
MnlI CCTC 8 cut(s) 130, 148, 249, 327, 428, 503, 517, 579
MroXI GAANNNNTTC 1 cut(s) 192
MseI TTAA 3 cut(s) 54, 129, 341
MslI CAYNNNNRTG 2 cut(s) 108, 175
MspR9I CCNGG 1 cut(s) 362
Mva1269I GAATGC 1 cut(s) 555
MvaI CCWGG 1 cut(s) 362
NdeII GATC 4 cut(s) 142, 289, 577, 667
NlaIII CATG 4 cut(s) 113, 499, 625, 674
NlaIV GGNNCC 2 cut(s) 25, 559
NmuCI GTSAC 1 cut(s) 179
NspI RCATGY 1 cut(s) 625
PaeI GCATGC 1 cut(s) 625
PaqCI CACCTGC 1 cut(s) 74
PceI AGGCCT 1 cut(s) 492
PctI GAATGC 1 cut(s) 555
PdmI GAANNNNTTC 1 cut(s) 192
PfeI GAWTC 1 cut(s) 388
PfoI TCCNGGA 1 cut(s) 360
PkrI GCNGC 4 cut(s) 225, 270, 369, 384
Ppu21I YACGTR 1 cut(s) 588
PshAI GACNNNNGTC 1 cut(s) 524
Psp6I CCWGG 1 cut(s) 360
PspGI CCWGG 1 cut(s) 360
PspN4I GGNNCC 2 cut(s) 25, 559
PspPI GGNCC 1 cut(s) 200
PsrI GAACNNNNNNTAC 2 cut(s) 84, 116
PsuI RGATCY 1 cut(s) 577
RseI CAYNNNNRTG 2 cut(s) 108, 175
SaqAI TTAA 3 cut(s) 54, 129, 341
SatI GCNGC 4 cut(s) 224, 269, 368, 383
Sau3AI GATC 4 cut(s) 142, 289, 577, 667
Sau96I GGNCC 1 cut(s) 200
ScrFI CCNGG 1 cut(s) 362
SduI GDGCHC 1 cut(s) 537
SetI ASST 7 cut(s) 88, 129, 141, 165, 228, 563, 590
SfaNI GCATC 2 cut(s) 70, 679
SmiMI CAYNNNNRTG 2 cut(s) 108, 175
SmlI CTYRAG 3 cut(s) 33, 215, 227
SmoI CTYRAG 3 cut(s) 33, 215, 227
SnaBI TACGTA 1 cut(s) 588
SphI GCATGC 1 cut(s) 625
Sse9I AATT 3 cut(s) 188, 455, 656
SseBI AGGCCT 1 cut(s) 492
SsiI CCGC 2 cut(s) 367, 504
SspMI CTAG 3 cut(s) 302, 693, 721
StuI AGGCCT 1 cut(s) 492
StyD4I CCNGG 1 cut(s) 360
TaaI ACNGT 2 cut(s) 469, 539
TaiI ACGT 1 cut(s) 590
TaqI TCGA 1 cut(s) 571
TasI AATT 3 cut(s) 188, 455, 656
TauI GCSGC 1 cut(s) 370
TfiI GAWTC 1 cut(s) 388
Tru1I TTAA 3 cut(s) 54, 129, 341
Tru9I TTAA 3 cut(s) 54, 129, 341
TseFI GTSAC 1 cut(s) 179
TseI GCWGC 3 cut(s) 223, 268, 382
Tsp45I GTSAC 1 cut(s) 179
TspDTI ATGAA 2 cut(s) 165, 606
VneI GTGCAC 1 cut(s) 533
XapI RAATTY 2 cut(s) 455, 656
XceI RCATGY 1 cut(s) 625
XmnI GAANNNNTTC 1 cut(s) 192
XspI CTAG 3 cut(s) 302, 693, 721
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.