Basic Information

Type: gene

Biological Identity

Species

arabidopsis_thaliana

Chromosome

Orthogroup ID

OG0013072

Physical Location & Seq

Genomic Coordinates Reverse (-)

2420838 .. 2422825

Gene Structure 1988 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

AT3G07580.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 432 bp

ATGGCGGATTCGAGCTCCAATCAGAATCGATACACTCCTCCTAATCAAAGGAAGGCTTCTGGGAATCGCCGGAAGTCGGGAGATCGAACAAGTAGCCAACAGAACAACGATAATGAGAGAAATCAGCCTCCTGCTACTGGTCTTCAGATGGAAAACATATCCCAGACCCAGAGGATAATAACAATAAAGGACTGCTCCAGGAGTGCAGCTTATCAGCTCATGAGCCAACGATGGGCAGCTGAAATGCATCAATACGACGACCCAACTGTGGATCTATCTGTGCGACCAATCATGTACTATGGAGGGAGTGTTTGGGGTAAACTACCTCATCAGATCCTGGCTGCAGCAAACAAGACATTACCTCCTCCATCGCCAACGGATTACATGACTGAAGTGCGGCGAGGATTGCTGATGCCAAAAGCCAACAATTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

No domains found.

Protein Analysis

143

Amino Acids

16.11

Weight (kDa)

9.72

Isoelectric Point (pI)

71.31

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0013072)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G07580 AT3G07580 AT5G48335
fragaria_vesca	FvH4_5g18680 FvH4_5g18680
malus_domestica	MD03G1298800.v1.1
prunus_persica	Prupe.8G267200_v2.0.a1
pyrus_communis	pycom03g23680
rosa_chinensis	RchiOBHm_Chr7g0176831
rosa_laevigata	RLG00000005582
rosa_multiflora	Rmu_sc0005162.1_g000005
rosa_roxburghii	Rroxscaffold_3G00276380
rosa_rugosa	Rorug06G0401100
rosa_samantha	Rh7AG000300 Rh7BG000600 Rh7CG000300 Rh7DG000500
rosa_wichuraiana	Rw7G000020

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AciI	CCGC	2 cut(s)	5, 397
AclWI	GGATC	2 cut(s)	279, 328
AcuI	CTGAAG	2 cut(s)	128, 411
AfaI	GTAC	1 cut(s)	296
AfiI	CCNNNNNNNGG	4 cut(s)	76, 137, 232, 268
AjnI	CCWGG	2 cut(s)	197, 336
AluBI	AGCT	4 cut(s)	15, 209, 217, 239
AluI	AGCT	4 cut(s)	15, 209, 217, 239
Alw21I	GWGCWC	1 cut(s)	17
AlwI	GGATC	2 cut(s)	279, 328
AlwNI	CAGNNNCTG	1 cut(s)	337
ApeKI	GCWGC	4 cut(s)	206, 236, 341, 344
BanII	GRGCYC	1 cut(s)	17
BbsI	GAAGAC	1 cut(s)	134
Bbv12I	GWGCWC	1 cut(s)	17
BbvI	GCAGC	4 cut(s)	218, 248, 328, 356
BccI	CCATC	3 cut(s)	142, 225, 376
BciT130I	CCWGG	2 cut(s)	199, 338
BfmI	CTRYAG	1 cut(s)	342
BisI	GCNGC	5 cut(s)	207, 237, 342, 345, 398
BlsI	GCNGC	5 cut(s)	208, 238, 343, 346, 399
Bme1390I	CCNGG	2 cut(s)	199, 338
BmrFI	CCNGG	2 cut(s)	199, 338
BmsI	GCATC	2 cut(s)	256, 402
BpiI	GAAGAC	1 cut(s)	134
BpmI	CTGGAG	1 cut(s)	181
Bsa29I	ATCGAT	1 cut(s)	28
BsaXI	ACNNNNNCTCC	4 cut(s)	294, 324, 346, 376
Bsc4I	CCNNNNNNNGG	4 cut(s)	76, 137, 232, 268
Bse1I	ACTGG	1 cut(s)	142
BseBI	CCWGG	2 cut(s)	199, 338
BseCI	ATCGAT	1 cut(s)	28
BseLI	CCNNNNNNNGG	4 cut(s)	76, 137, 232, 268
BseNI	ACTGG	1 cut(s)	142
BseRI	GAGGAG	2 cut(s)	27, 354
BseXI	GCAGC	4 cut(s)	218, 248, 328, 356
BsgI	GTGCAG	1 cut(s)	225
BshVI	ATCGAT	1 cut(s)	28
BsiHKAI	GWGCWC	1 cut(s)	17
BsiSI	CCGG	1 cut(s)	70
BslI	CCNNNNNNNGG	4 cut(s)	76, 137, 232, 268
Bsp1286I	GDGCHC	1 cut(s)	17
Bsp143I	GATC	3 cut(s)	82, 271, 333
BspACI	CCGC	2 cut(s)	5, 397
BspDI	ATCGAT	1 cut(s)	28
BspHI	TCATGA	1 cut(s)	219
BspMAI	CTGCAG	1 cut(s)	346
BspPI	GGATC	2 cut(s)	279, 328
BsrI	ACTGG	1 cut(s)	142
BssMI	GATC	3 cut(s)	82, 271, 333
Bst2UI	CCWGG	2 cut(s)	199, 338
Bst4CI	ACNGT	1 cut(s)	268
BstKTI	GATC	3 cut(s)	85, 274, 336
BstMBI	GATC	3 cut(s)	82, 271, 333
BstMWI	GCNNNNNNNGC	1 cut(s)	406
BstNI	CCWGG	2 cut(s)	199, 338
BstSCI	CCNGG	2 cut(s)	197, 336
BstSFI	CTRYAG	1 cut(s)	342
BstV1I	GCAGC	4 cut(s)	218, 248, 328, 356
BstV2I	GAAGAC	1 cut(s)	134
BstX2I	RGATCY	2 cut(s)	271, 333
BstYI	RGATCY	2 cut(s)	271, 333
Bsu15I	ATCGAT	1 cut(s)	28
BsuTUI	ATCGAT	1 cut(s)	28
BtgZI	GCGATG	1 cut(s)	354
CaiI	CAGNNNCTG	1 cut(s)	337
CciI	TCATGA	1 cut(s)	219
ClaI	ATCGAT	1 cut(s)	28
Csp6I	GTAC	1 cut(s)	295
CviAII	CATG	3 cut(s)	220, 292, 385
CviQI	GTAC	1 cut(s)	295
DpnI	GATC	3 cut(s)	84, 273, 335
DpnII	GATC	3 cut(s)	82, 271, 333
EciI	GGCGGA	1 cut(s)	20
Ecl136II	GAGCTC	1 cut(s)	15
Eco24I	GRGCYC	1 cut(s)	17
Eco53kI	GAGCTC	1 cut(s)	15
Eco57I	CTGAAG	2 cut(s)	128, 411
EcoICRI	GAGCTC	1 cut(s)	15
EcoRII	CCWGG	2 cut(s)	197, 336
EcoT22I	ATGCAT	1 cut(s)	249
EcoT38I	GRGCYC	1 cut(s)	17
FaeI	CATG	3 cut(s)	223, 295, 388
FaiI	YATR	5 cut(s)	158, 221, 293, 300, 386
FalI	AAGNNNNNCTT	2 cut(s)	40, 72
FatI	CATG	3 cut(s)	219, 291, 384
Fnu4HI	GCNGC	5 cut(s)	207, 237, 342, 345, 398
FriOI	GRGCYC	1 cut(s)	17
Fsp4HI	GCNGC	5 cut(s)	207, 237, 342, 345, 398
GluI	GCNGC	5 cut(s)	207, 237, 342, 345, 398
GsuI	CTGGAG	1 cut(s)	181
HapII	CCGG	1 cut(s)	70
Hin1II	CATG	3 cut(s)	223, 295, 388
HinfI	GANTC	3 cut(s)	8, 25, 64
HpaII	CCGG	1 cut(s)	70
Hpy166II	GTNNAC	1 cut(s)	320
Hpy188I	TCNGA	3 cut(s)	24, 147, 333
Hpy188III	TCNNGA	2 cut(s)	78, 220
Hpy8I	GTNNAC	1 cut(s)	320
Hpy99I	CGWCG	1 cut(s)	260
HpyAV	CCTTC	1 cut(s)	46
HpyCH4III	ACNGT	1 cut(s)	268
HpyCH4V	TGCA	3 cut(s)	206, 247, 344
HpyF10VI	GCNNNNNNNGC	1 cut(s)	406
Hsp92II	CATG	3 cut(s)	223, 295, 388
Kzo9I	GATC	3 cut(s)	82, 271, 333
LmnI	GCTCC	2 cut(s)	20, 200
Lsp1109I	GCAGC	4 cut(s)	218, 248, 328, 356
LweI	GCATC	2 cut(s)	256, 402
MalI	GATC	3 cut(s)	84, 273, 335
MboI	GATC	3 cut(s)	82, 271, 333
MboII	GAAGA	1 cut(s)	134
MfeI	CAATTG	1 cut(s)	427
MflI	RGATCY	2 cut(s)	271, 333
MhlI	GDGCHC	1 cut(s)	17
MluCI	AATT	1 cut(s)	427
MnlI	CCTC	8 cut(s)	48, 138, 165, 296, 336, 372, 375, 395
Mph1103I	ATGCAT	1 cut(s)	249
MspA1I	CMGCKG	1 cut(s)	239
MspI	CCGG	1 cut(s)	70
MspR9I	CCNGG	2 cut(s)	199, 338
MunI	CAATTG	1 cut(s)	427
MvaI	CCWGG	2 cut(s)	199, 338
MwoI	GCNNNNNNNGC	1 cut(s)	406
NdeII	GATC	3 cut(s)	82, 271, 333
NlaIII	CATG	3 cut(s)	223, 295, 388
NsiI	ATGCAT	1 cut(s)	249
PagI	TCATGA	1 cut(s)	219
PfeI	GAWTC	3 cut(s)	8, 25, 64
PfoI	TCCNGGA	1 cut(s)	197
PkrI	GCNGC	5 cut(s)	208, 238, 343, 346, 399
Psp124BI	GAGCTC	1 cut(s)	17
Psp6I	CCWGG	2 cut(s)	197, 336
PspGI	CCWGG	2 cut(s)	197, 336
PstI	CTGCAG	1 cut(s)	346
PstNI	CAGNNNCTG	1 cut(s)	337
PsuI	RGATCY	2 cut(s)	271, 333
PvuII	CAGCTG	1 cut(s)	239
RsaI	GTAC	1 cut(s)	296
RsaNI	GTAC	1 cut(s)	295
SacI	GAGCTC	1 cut(s)	17
SatI	GCNGC	5 cut(s)	207, 237, 342, 345, 398
Sau3AI	GATC	3 cut(s)	82, 271, 333
ScrFI	CCNGG	2 cut(s)	199, 338
SduI	GDGCHC	1 cut(s)	17
SetI	ASST	6 cut(s)	17, 211, 219, 241, 328, 364
SfaNI	GCATC	2 cut(s)	256, 402
SfcI	CTRYAG	1 cut(s)	342
Sse9I	AATT	1 cut(s)	427
SsiI	CCGC	2 cut(s)	5, 397
SstI	GAGCTC	1 cut(s)	17
StyD4I	CCNGG	2 cut(s)	197, 336
TaaI	ACNGT	1 cut(s)	268
TaqI	TCGA	3 cut(s)	11, 28, 85
TasI	AATT	1 cut(s)	427
TatI	WGTACW	1 cut(s)	294
TauI	GCSGC	1 cut(s)	400
TfiI	GAWTC	3 cut(s)	8, 25, 64
TseI	GCWGC	4 cut(s)	206, 236, 341, 344
TspGWI	ACGGA	1 cut(s)	392
Zsp2I	ATGCAT	1 cut(s)	249

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.