FvH4_5g18680

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
fragaria_vesca
Fvb5
OG0013072
Physical Location & Seq
Forward (+)
10741153 .. 10744590
3438 bp
Loading structure...
UTR
Exon/CDS
Intron
FvH4_5g18680.t2

Sequence Viewer

Length: 528 bp
ATGCTGGAAAATCCTACATCAGCGGCACCACCCGCCGCTTCAGATCCAACCTCAGCTGTCAAGCGCTACGCTCCTCCCAATCAGAGAAATCGTGCTCTTAACAGACGCAAGTCCGCAGAGCGGTTTGATCGAACTAACAATCTACATGGGAGTGATTTGGAAAAGAATCAAATTGTCTTTTCAAGAGGTTCTGGTGTTATAGATCATGGGGATGGAGGTGGCAGCAGTCTTCTAAATGAAAACTCTCAACCCTGTTTTATAGCTTTGGAGGGGTGTTGCAGCAGTCAAGCTTTCGATCTCTTGAATAATCGTTGGGCAGCCGCAATGCATTGCTTCAATGATCCATCTGTAGATCTATCAGAAAGACCCGTCATGTACTCAGGAAGCGGAGCAGCATGGGGTCAATTCAGACCCCCTCATCAGTTAATGGTTGCAGCAGGGGGTGCTGGGGCGCCTGGTTCTTCCATGGACTTCTTGAGTGAACTTCACCGGTTGAAGCACAATTTCAATGTCAGTTCTGGAATCTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

176

Amino Acids

18.77

Weight (kDa)

7.0

Isoelectric Point (pI)

41.07

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0013072)

Species Orthologous Gene IDs
arabidopsis_thaliana AT3G07580 AT3G07580 AT5G48335
fragaria_vesca FvH4_5g18680 FvH4_5g18680
malus_domestica MD03G1298800.v1.1
prunus_persica Prupe.8G267200_v2.0.a1
pyrus_communis pycom03g23680
rosa_chinensis RchiOBHm_Chr7g0176831
rosa_laevigata RLG00000005582
rosa_multiflora Rmu_sc0005162.1_g000005
rosa_roxburghii Rroxscaffold_3G00276380
rosa_rugosa Rorug06G0401100
rosa_samantha Rh7AG000300 Rh7BG000600 Rh7CG000300 Rh7DG000500
rosa_wichuraiana Rw7G000020

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB1I GGYRCC 2 cut(s) 25, 451
AccBSI CCGCTC 1 cut(s) 121
AciI CCGC 7 cut(s) 23, 33, 36, 114, 121, 321, 387
AclWI GGATC 2 cut(s) 38, 335
AcuI CTGAAG 1 cut(s) 24
AcyI GRCGYC 1 cut(s) 452
AfaI GTAC 1 cut(s) 377
AfeI AGCGCT 1 cut(s) 65
AfiI CCNNNNNNNGG 1 cut(s) 120
AgeI ACCGGT 1 cut(s) 489
AgsI TTSAA 5 cut(s) 183, 304, 337, 496, 508
AjnI CCWGG 1 cut(s) 454
AluBI AGCT 3 cut(s) 56, 263, 290
AluI AGCT 3 cut(s) 56, 263, 290
Alw21I GWGCWC 1 cut(s) 97
AlwI GGATC 2 cut(s) 38, 335
Aor51HI AGCGCT 1 cut(s) 65
ApeKI GCWGC 5 cut(s) 222, 279, 317, 392, 434
AsiGI ACCGGT 1 cut(s) 489
AspLEI GCGC 2 cut(s) 66, 454
AsuHPI GGTGA 1 cut(s) 479
BanI GGYRCC 2 cut(s) 25, 451
BbsI GAAGAC 1 cut(s) 221
Bbv12I GWGCWC 1 cut(s) 97
BbvCI CCTCAGC 1 cut(s) 52
BbvI GCAGC 5 cut(s) 234, 291, 329, 404, 446
BccI CCATC 2 cut(s) 206, 352
BciT130I CCWGG 1 cut(s) 456
BfaI CTAG 1 cut(s) 526
BfmI CTRYAG 1 cut(s) 348
BfoI RGCGCY 2 cut(s) 67, 455
BglII AGATCT 1 cut(s) 352
BisI GCNGC 8 cut(s) 24, 36, 223, 280, 318, 321, 393, 435
BlsI GCNGC 8 cut(s) 25, 37, 224, 281, 319, 322, 394, 436
Bme1390I CCNGG 1 cut(s) 456
BmiI GGNNCC 2 cut(s) 27, 453
BmrFI CCNGG 1 cut(s) 456
BoxI GACNNNNGTC 1 cut(s) 109
BpiI GAAGAC 1 cut(s) 221
Bpu10I CCTNAGC 1 cut(s) 52
BpuEI CTTGAG 1 cut(s) 496
BsaHI GRCGYC 1 cut(s) 452
BsaJI CCNNGG 1 cut(s) 465
BsaWI WCCGGW 1 cut(s) 489
Bsc4I CCNNNNNNNGG 1 cut(s) 120
Bse118I RCCGGY 1 cut(s) 489
Bse3DI GCAATG 2 cut(s) 328, 330
BseBI CCWGG 1 cut(s) 456
BseDI CCNNGG 1 cut(s) 465
BseGI GGATG 1 cut(s) 217
BseLI CCNNNNNNNGG 1 cut(s) 120
BseMI GCAATG 2 cut(s) 328, 330
BseMII CTCAG 2 cut(s) 66, 393
BseRI GAGGAG 1 cut(s) 63
BseXI GCAGC 5 cut(s) 234, 291, 329, 404, 446
BseYI CCCAGC 1 cut(s) 446
BshNI GGYRCC 2 cut(s) 25, 451
BshTI ACCGGT 1 cut(s) 489
BsiHKAI GWGCWC 1 cut(s) 97
BsiSI CCGG 1 cut(s) 490
BslI CCNNNNNNNGG 1 cut(s) 120
Bsp1286I GDGCHC 1 cut(s) 97
Bsp143I GATC 6 cut(s) 43, 127, 202, 295, 340, 352
Bsp19I CCATGG 1 cut(s) 465
BspACI CCGC 7 cut(s) 23, 33, 36, 114, 121, 321, 387
BspCNI CTCAG 2 cut(s) 65, 392
BspLI GGNNCC 2 cut(s) 27, 453
BspPI GGATC 2 cut(s) 38, 335
BspT107I GGYRCC 2 cut(s) 25, 451
BsrBI CCGCTC 1 cut(s) 121
BsrDI GCAATG 2 cut(s) 328, 330
BsrFI RCCGGY 1 cut(s) 489
BssAI RCCGGY 1 cut(s) 489
BssECI CCNNGG 1 cut(s) 465
BssMI GATC 6 cut(s) 43, 127, 202, 295, 340, 352
BssNI GRCGYC 1 cut(s) 452
BssT1I CCWWGG 1 cut(s) 465
Bst2UI CCWGG 1 cut(s) 456
BstACI GRCGYC 1 cut(s) 452
BstAPI GCANNNNNTGC 1 cut(s) 443
BstDEI CTNAG 2 cut(s) 52, 379
BstDSI CCRYGG 1 cut(s) 465
BstF5I GGATG 1 cut(s) 217
BstH2I RGCGCY 2 cut(s) 67, 455
BstHHI GCGC 2 cut(s) 66, 454
BstKTI GATC 6 cut(s) 46, 130, 205, 298, 343, 355
BstMBI GATC 6 cut(s) 43, 127, 202, 295, 340, 352
BstMWI GCNNNNNNNGC 2 cut(s) 32, 443
BstNI CCWGG 1 cut(s) 456
BstPAI GACNNNNGTC 1 cut(s) 109
BstSCI CCNGG 1 cut(s) 454
BstSFI CTRYAG 1 cut(s) 348
BstV1I GCAGC 5 cut(s) 234, 291, 329, 404, 446
BstV2I GAAGAC 1 cut(s) 221
BstX2I RGATCY 2 cut(s) 43, 352
BstYI RGATCY 2 cut(s) 43, 352
BtgI CCRYGG 1 cut(s) 465
BtsCI GGATG 1 cut(s) 217
CfoI GCGC 2 cut(s) 66, 454
Cfr10I RCCGGY 1 cut(s) 489
CseI GACGC 1 cut(s) 114
Csp6I GTAC 1 cut(s) 376
CspAI ACCGGT 1 cut(s) 489
CviAII CATG 5 cut(s) 146, 206, 373, 396, 466
CviJI RGCY 4 cut(s) 56, 263, 290, 320
CviKI_1 RGCY 4 cut(s) 56, 263, 290, 320
CviQI GTAC 1 cut(s) 376
DdeI CTNAG 2 cut(s) 52, 379
DinI GGCGCC 1 cut(s) 453
DpnI GATC 6 cut(s) 45, 129, 204, 297, 342, 354
DpnII GATC 6 cut(s) 43, 127, 202, 295, 340, 352
Eco130I CCWWGG 1 cut(s) 465
Eco47III AGCGCT 1 cut(s) 65
Eco57I CTGAAG 1 cut(s) 24
EcoRII CCWGG 1 cut(s) 454
EcoT14I CCWWGG 1 cut(s) 465
EcoT22I ATGCAT 1 cut(s) 330
EgeI GGCGCC 1 cut(s) 453
EheI GGCGCC 1 cut(s) 453
ErhI CCWWGG 1 cut(s) 465
FaeI CATG 5 cut(s) 149, 209, 376, 399, 469
FaiI YATR 7 cut(s) 147, 200, 207, 260, 374, 397, 467
FatI CATG 5 cut(s) 145, 205, 372, 395, 465
FauI CCCGC 1 cut(s) 40
Fnu4HI GCNGC 8 cut(s) 24, 36, 223, 280, 318, 321, 393, 435
FokI GGATG 1 cut(s) 224
Fsp4HI GCNGC 8 cut(s) 24, 36, 223, 280, 318, 321, 393, 435
FspBI CTAG 1 cut(s) 526
GlaI GCGC 2 cut(s) 65, 453
GluI GCNGC 8 cut(s) 24, 36, 223, 280, 318, 321, 393, 435
GsaI CCCAGC 1 cut(s) 450
HaeII RGCGCY 2 cut(s) 67, 455
HapII CCGG 1 cut(s) 490
HgaI GACGC 1 cut(s) 114
HhaI GCGC 2 cut(s) 66, 454
Hin1I GRCGYC 1 cut(s) 452
Hin1II CATG 5 cut(s) 149, 209, 376, 399, 469
Hin6I GCGC 2 cut(s) 64, 452
HinP1I GCGC 2 cut(s) 64, 452
HindIII AAGCTT 1 cut(s) 288
HinfI GANTC 2 cut(s) 166, 522
HpaII CCGG 1 cut(s) 490
HphI GGTGA 1 cut(s) 479
Hpy166II GTNNAC 1 cut(s) 482
Hpy188I TCNGA 4 cut(s) 43, 84, 361, 410
Hpy188III TCNNGA 5 cut(s) 183, 301, 381, 475, 519
Hpy8I GTNNAC 1 cut(s) 482
HpyCH4V TGCA 3 cut(s) 279, 328, 434
HpyF10VI GCNNNNNNNGC 2 cut(s) 32, 443
HpyF3I CTNAG 2 cut(s) 52, 379
Hsp92I GRCGYC 1 cut(s) 452
Hsp92II CATG 5 cut(s) 149, 209, 376, 399, 469
HspAI GCGC 2 cut(s) 64, 452
KasI GGCGCC 1 cut(s) 451
Kzo9I GATC 6 cut(s) 43, 127, 202, 295, 340, 352
LmnI GCTCC 2 cut(s) 76, 389
LpnPI CCDG 9 cut(s) 177, 265, 366, 423, 432, 441, 468, 503, 504
Lsp1109I GCAGC 5 cut(s) 234, 291, 329, 404, 446
MaeI CTAG 1 cut(s) 526
MalI GATC 6 cut(s) 45, 129, 204, 297, 342, 354
MbiI CCGCTC 1 cut(s) 121
MboI GATC 6 cut(s) 43, 127, 202, 295, 340, 352
MboII GAAGA 2 cut(s) 221, 453
MflI RGATCY 2 cut(s) 43, 352
MhlI GDGCHC 1 cut(s) 97
MluCI AATT 3 cut(s) 171, 404, 502
Mly113I GGCGCC 1 cut(s) 452
MmeI TCCRAC 1 cut(s) 71
MnlI CCTC 6 cut(s) 61, 84, 179, 209, 262, 426
Mph1103I ATGCAT 1 cut(s) 330
MseI TTAA 2 cut(s) 99, 425
MslI CAYNNNNRTG 2 cut(s) 150, 210
MspA1I CMGCKG 2 cut(s) 23, 56
MspI CCGG 1 cut(s) 490
MspR9I CCNGG 1 cut(s) 456
MvaI CCWGG 1 cut(s) 456
MwoI GCNNNNNNNGC 2 cut(s) 32, 443
NarI GGCGCC 1 cut(s) 452
NcoI CCATGG 1 cut(s) 465
NdeII GATC 6 cut(s) 43, 127, 202, 295, 340, 352
NlaIII CATG 5 cut(s) 149, 209, 376, 399, 469
NlaIV GGNNCC 2 cut(s) 27, 453
NsiI ATGCAT 1 cut(s) 330
PfeI GAWTC 2 cut(s) 166, 522
PinAI ACCGGT 1 cut(s) 489
PkrI GCNGC 8 cut(s) 25, 37, 224, 281, 319, 322, 394, 436
PluTI GGCGCC 1 cut(s) 455
PshAI GACNNNNGTC 1 cut(s) 109
Psp6I CCWGG 1 cut(s) 454
PspFI CCCAGC 1 cut(s) 446
PspGI CCWGG 1 cut(s) 454
PspN4I GGNNCC 2 cut(s) 27, 453
PsuI RGATCY 2 cut(s) 43, 352
PvuII CAGCTG 1 cut(s) 56
RsaI GTAC 1 cut(s) 377
RsaNI GTAC 1 cut(s) 376
RseI CAYNNNNRTG 2 cut(s) 150, 210
SaqAI TTAA 2 cut(s) 99, 425
SatI GCNGC 8 cut(s) 24, 36, 223, 280, 318, 321, 393, 435
Sau3AI GATC 6 cut(s) 43, 127, 202, 295, 340, 352
ScrFI CCNGG 1 cut(s) 456
SduI GDGCHC 1 cut(s) 97
SetI ASST 6 cut(s) 53, 58, 190, 220, 265, 292
SfcI CTRYAG 1 cut(s) 348
SfoI GGCGCC 1 cut(s) 453
SmiMI CAYNNNNRTG 2 cut(s) 150, 210
SmlI CTYRAG 1 cut(s) 475
SmoI CTYRAG 1 cut(s) 475
Sse9I AATT 3 cut(s) 171, 404, 502
SsiI CCGC 7 cut(s) 23, 33, 36, 114, 121, 321, 387
SspDI GGCGCC 1 cut(s) 451
SspMI CTAG 1 cut(s) 526
StyD4I CCNGG 1 cut(s) 454
StyI CCWWGG 1 cut(s) 465
TaqI TCGA 2 cut(s) 130, 294
TasI AATT 3 cut(s) 171, 404, 502
TatI WGTACW 1 cut(s) 375
TauI GCSGC 3 cut(s) 26, 38, 323
TfiI GAWTC 2 cut(s) 166, 522
Tru1I TTAA 2 cut(s) 99, 425
Tru9I TTAA 2 cut(s) 99, 425
TseI GCWGC 5 cut(s) 222, 279, 317, 392, 434
TspDTI ATGAA 1 cut(s) 252
XspI CTAG 1 cut(s) 526
Zsp2I ATGCAT 1 cut(s) 330
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.