Rh7DG000500

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr7D
OG0013072
Physical Location & Seq
Reverse (-)
64490 .. 70115
5626 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh7DG000500.1

Sequence Viewer

Length: 408 bp
ATGCTGGAAAATCCTTCATCAGCGGCAGCAGATCCAGCCGCAGTGGTGAAGCGCTACGCTCCTCCTAATCAGAGAAATCGTCCTCTTAACAGACGCAAGTCCGCAGAGCGGTTTGATCGAACTAACAATCTTCATGGGAATGATTTGGAAAAGAATCAAATTGCTTCTTCAAGAGGTACTGTTATAGATCATGGGGATGGAGGTAGCAGCAGTCTTCTAAATGAAAATTCTCATCCCTGGTTTATAGCTTTAGAGGGGTGTTGCAGCAGTCAGGCTTTCGATCTCTTGAATAATCGTATGTGTCTACAAGTCTTGAAAAAGAATTATTATATTTGGTTCAGGAATGATTTGAAATTTATGTGTTTACAATGCCATAAAAATGATATCACCATGGATGCCCCCTTGTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

135

Amino Acids

15.31

Weight (kDa)

8.67

Isoelectric Point (pI)

43.59

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Orthologous Genes (Group: OG0013072)

Species Orthologous Gene IDs
arabidopsis_thaliana AT3G07580 AT3G07580 AT5G48335
fragaria_vesca FvH4_5g18680 FvH4_5g18680
malus_domestica MD03G1298800.v1.1
prunus_persica Prupe.8G267200_v2.0.a1
pyrus_communis pycom03g23680
rosa_chinensis RchiOBHm_Chr7g0176831
rosa_laevigata RLG00000005582
rosa_multiflora Rmu_sc0005162.1_g000005
rosa_roxburghii Rroxscaffold_3G00276380
rosa_rugosa Rorug06G0401100
rosa_samantha Rh7AG000300 Rh7BG000600 Rh7CG000300 Rh7DG000500
rosa_wichuraiana Rw7G000020

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccBSI CCGCTC 1 cut(s) 109
AccI GTMKAC 1 cut(s) 304
AciI CCGC 4 cut(s) 23, 39, 102, 109
AclWI GGATC 1 cut(s) 26
AcsI RAATTY 2 cut(s) 226, 353
AfaI GTAC 1 cut(s) 178
AfeI AGCGCT 1 cut(s) 53
AfiI CCNNNNNNNGG 1 cut(s) 108
AgsI TTSAA 4 cut(s) 171, 289, 316, 352
AjnI CCWGG 1 cut(s) 236
AluBI AGCT 1 cut(s) 248
AluI AGCT 1 cut(s) 248
AlwI GGATC 1 cut(s) 26
Aor51HI AGCGCT 1 cut(s) 53
ApeKI GCWGC 3 cut(s) 26, 207, 264
ApoI RAATTY 2 cut(s) 226, 353
AspLEI GCGC 1 cut(s) 54
AsuHPI GGTGA 2 cut(s) 58, 379
BbsI GAAGAC 1 cut(s) 206
BbvI GCAGC 3 cut(s) 38, 219, 276
BccI CCATC 1 cut(s) 191
BciT130I CCWGG 1 cut(s) 238
BfoI RGCGCY 1 cut(s) 55
BisI GCNGC 5 cut(s) 24, 27, 39, 208, 265
BlsI GCNGC 5 cut(s) 25, 28, 40, 209, 266
Bme1390I CCNGG 1 cut(s) 238
BmrFI CCNGG 1 cut(s) 238
BmsI GCATC 1 cut(s) 385
BoxI GACNNNNGTC 1 cut(s) 97
BpiI GAAGAC 1 cut(s) 206
BsaJI CCNNGG 2 cut(s) 236, 390
Bsc4I CCNNNNNNNGG 1 cut(s) 108
BseBI CCWGG 1 cut(s) 238
BseDI CCNNGG 2 cut(s) 236, 390
BseGI GGATG 3 cut(s) 202, 232, 400
BseLI CCNNNNNNNGG 1 cut(s) 108
BseRI GAGGAG 1 cut(s) 51
BseXI GCAGC 3 cut(s) 38, 219, 276
BslI CCNNNNNNNGG 1 cut(s) 108
Bsp143I GATC 4 cut(s) 31, 115, 187, 280
Bsp19I CCATGG 1 cut(s) 390
BspACI CCGC 4 cut(s) 23, 39, 102, 109
BspPI GGATC 1 cut(s) 26
BsrBI CCGCTC 1 cut(s) 109
BssECI CCNNGG 2 cut(s) 236, 390
BssMI GATC 4 cut(s) 31, 115, 187, 280
BssT1I CCWWGG 1 cut(s) 390
Bst2UI CCWGG 1 cut(s) 238
Bst4CI ACNGT 1 cut(s) 181
BstDSI CCRYGG 1 cut(s) 390
BstF5I GGATG 3 cut(s) 202, 232, 400
BstH2I RGCGCY 1 cut(s) 55
BstHHI GCGC 1 cut(s) 54
BstKTI GATC 4 cut(s) 34, 118, 190, 283
BstMBI GATC 4 cut(s) 31, 115, 187, 280
BstMWI GCNNNNNNNGC 1 cut(s) 35
BstNI CCWGG 1 cut(s) 238
BstPAI GACNNNNGTC 1 cut(s) 97
BstSCI CCNGG 1 cut(s) 236
BstV1I GCAGC 3 cut(s) 38, 219, 276
BstV2I GAAGAC 1 cut(s) 206
BstX2I RGATCY 1 cut(s) 31
BstYI RGATCY 1 cut(s) 31
BtgI CCRYGG 1 cut(s) 390
BtsCI GGATG 3 cut(s) 202, 232, 400
BtsI GCAGTG 1 cut(s) 48
BtsIMutI CAGTG 1 cut(s) 48
CfoI GCGC 1 cut(s) 54
CseI GACGC 1 cut(s) 102
Csp6I GTAC 1 cut(s) 177
CviAII CATG 3 cut(s) 134, 191, 391
CviJI RGCY 3 cut(s) 38, 248, 275
CviKI_1 RGCY 3 cut(s) 38, 248, 275
CviQI GTAC 1 cut(s) 177
DpnI GATC 4 cut(s) 33, 117, 189, 282
DpnII GATC 4 cut(s) 31, 115, 187, 280
Eco130I CCWWGG 1 cut(s) 390
Eco32I GATATC 1 cut(s) 385
Eco47III AGCGCT 1 cut(s) 53
EcoRII CCWGG 1 cut(s) 236
EcoRV GATATC 1 cut(s) 385
EcoT14I CCWWGG 1 cut(s) 390
ErhI CCWWGG 1 cut(s) 390
FaeI CATG 3 cut(s) 137, 194, 394
FaiI YATR 9 cut(s) 135, 185, 192, 245, 299, 330, 359, 375, 392
FatI CATG 3 cut(s) 133, 190, 390
FblI GTMKAC 1 cut(s) 304
Fnu4HI GCNGC 5 cut(s) 24, 27, 39, 208, 265
FokI GGATG 2 cut(s) 209, 219
Fsp4HI GCNGC 5 cut(s) 24, 27, 39, 208, 265
GlaI GCGC 1 cut(s) 53
GluI GCNGC 5 cut(s) 24, 27, 39, 208, 265
HaeII RGCGCY 1 cut(s) 55
HgaI GACGC 1 cut(s) 102
HhaI GCGC 1 cut(s) 54
Hin1II CATG 3 cut(s) 137, 194, 394
Hin6I GCGC 1 cut(s) 52
HinP1I GCGC 1 cut(s) 52
HinfI GANTC 1 cut(s) 154
HphI GGTGA 2 cut(s) 58, 379
Hpy166II GTNNAC 2 cut(s) 305, 365
Hpy188I TCNGA 1 cut(s) 72
Hpy188III TCNNGA 4 cut(s) 171, 286, 313, 340
Hpy8I GTNNAC 2 cut(s) 305, 365
HpyAV CCTTC 1 cut(s) 24
HpyCH4III ACNGT 1 cut(s) 181
HpyCH4V TGCA 1 cut(s) 264
HpyF10VI GCNNNNNNNGC 1 cut(s) 35
Hsp92II CATG 3 cut(s) 137, 194, 394
HspAI GCGC 1 cut(s) 52
Kzo9I GATC 4 cut(s) 31, 115, 187, 280
LmnI GCTCC 1 cut(s) 64
LpnPI CCDG 5 cut(s) 48, 223, 250, 257, 325
Lsp1109I GCAGC 3 cut(s) 38, 219, 276
LweI GCATC 1 cut(s) 385
MalI GATC 4 cut(s) 33, 117, 189, 282
MbiI CCGCTC 1 cut(s) 109
MboI GATC 4 cut(s) 31, 115, 187, 280
MboII GAAGA 3 cut(s) 122, 159, 206
MflI RGATCY 1 cut(s) 31
MluCI AATT 4 cut(s) 159, 226, 322, 353
MnlI CCTC 5 cut(s) 72, 93, 167, 194, 247
MseI TTAA 1 cut(s) 87
MslI CAYNNNNRTG 3 cut(s) 138, 195, 378
MspA1I CMGCKG 1 cut(s) 23
MspR9I CCNGG 1 cut(s) 238
MvaI CCWGG 1 cut(s) 238
MwoI GCNNNNNNNGC 1 cut(s) 35
NcoI CCATGG 1 cut(s) 390
NdeII GATC 4 cut(s) 31, 115, 187, 280
NlaIII CATG 3 cut(s) 137, 194, 394
PfeI GAWTC 1 cut(s) 154
PkrI GCNGC 5 cut(s) 25, 28, 40, 209, 266
PshAI GACNNNNGTC 1 cut(s) 97
Psp6I CCWGG 1 cut(s) 236
PspGI CCWGG 1 cut(s) 236
PsuI RGATCY 1 cut(s) 31
RsaI GTAC 1 cut(s) 178
RsaNI GTAC 1 cut(s) 177
RseI CAYNNNNRTG 3 cut(s) 138, 195, 378
SaqAI TTAA 1 cut(s) 87
SatI GCNGC 5 cut(s) 24, 27, 39, 208, 265
Sau3AI GATC 4 cut(s) 31, 115, 187, 280
ScrFI CCNGG 1 cut(s) 238
SetI ASST 3 cut(s) 178, 205, 250
SfaNI GCATC 1 cut(s) 385
SmiMI CAYNNNNRTG 3 cut(s) 138, 195, 378
Sse9I AATT 4 cut(s) 159, 226, 322, 353
SsiI CCGC 4 cut(s) 23, 39, 102, 109
StyD4I CCNGG 1 cut(s) 236
StyI CCWWGG 1 cut(s) 390
TaaI ACNGT 1 cut(s) 181
TaqI TCGA 2 cut(s) 118, 279
TasI AATT 4 cut(s) 159, 226, 322, 353
TauI GCSGC 2 cut(s) 26, 41
TfiI GAWTC 1 cut(s) 154
Tru1I TTAA 1 cut(s) 87
Tru9I TTAA 1 cut(s) 87
TscAI CASTG 1 cut(s) 48
TseI GCWGC 3 cut(s) 26, 207, 264
TspDTI ATGAA 3 cut(s) 6, 122, 237
TspRI CASTG 1 cut(s) 48
XapI RAATTY 2 cut(s) 226, 353
XmiI GTMKAC 1 cut(s) 304
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.