Rh7AG000300

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr7A
OG0013072
Physical Location & Seq
Reverse (-)
74488 .. 79982
5495 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh7AG000300.1

Sequence Viewer

Length: 567 bp
ATGCTGGAAAATCCTTCATCAGCGGCAGCAGATCCAGCCGCAGTGGTGAAGCGCTACGCTCCTCCTAATCAGAGAAATCGTCCTCTTAACAGACGCAAGTCCGCAGAGCGGTTTGATCGAACTAACAATCTTCATGGGAATGATTTGGAAAAGAATCAAATTGCTTCTTCAAGAGGTACTGTTATAGATCATGGGGATGGAGGTAGCAGCAGTCTTCTAAATGAAAATTCTCATCCCTGGTTTATAGCTTTAGAGGGGTGTTGCAGCAGTCAGGCTTTCGATCTCTTGAATAATCGTTGGGCAGCCACAATGCATTGCTTCAATGATTCATCTATAGATCTATCAGAAAGACCCGTTATGTACTCAGGAAGCGGAGCAGCATGGAGTCACTTCAGACTCCCTCATCAGGTAAATATGAACCATTCTCTCTCTCACACACACAAGCTATTACATTTGGTCATCTTTAGTCTCAGTCACATGCTTTTATGTTTGGTTTGGTTATCTTCAGTTAATGGCTCCAGCAGGGGGTGCTGGGTCACCTGTTTCTTCCATGGACTTCTTGAGTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

188

Amino Acids

20.95

Weight (kDa)

7.75

Isoelectric Point (pI)

39.99

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0013072)

Species Orthologous Gene IDs
arabidopsis_thaliana AT3G07580 AT3G07580 AT5G48335
fragaria_vesca FvH4_5g18680 FvH4_5g18680
malus_domestica MD03G1298800.v1.1
prunus_persica Prupe.8G267200_v2.0.a1
pyrus_communis pycom03g23680
rosa_chinensis RchiOBHm_Chr7g0176831
rosa_laevigata RLG00000005582
rosa_multiflora Rmu_sc0005162.1_g000005
rosa_roxburghii Rroxscaffold_3G00276380
rosa_rugosa Rorug06G0401100
rosa_samantha Rh7AG000300 Rh7BG000600 Rh7CG000300 Rh7DG000500
rosa_wichuraiana Rw7G000020

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccBSI CCGCTC 1 cut(s) 109
AciI CCGC 5 cut(s) 23, 39, 102, 109, 372
AclWI GGATC 1 cut(s) 26
AcsI RAATTY 1 cut(s) 226
AcuI CTGAAG 2 cut(s) 376, 489
AfaI GTAC 2 cut(s) 178, 362
AfeI AGCGCT 1 cut(s) 53
AfiI CCNNNNNNNGG 3 cut(s) 108, 406, 525
AgsI TTSAA 3 cut(s) 171, 289, 322
AjnI CCWGG 1 cut(s) 236
AluBI AGCT 2 cut(s) 248, 445
AluI AGCT 2 cut(s) 248, 445
Alw26I GTCTC 1 cut(s) 473
AlwI GGATC 1 cut(s) 26
Aor51HI AGCGCT 1 cut(s) 53
ApeKI GCWGC 5 cut(s) 26, 207, 264, 302, 377
ApoI RAATTY 1 cut(s) 226
AspLEI GCGC 1 cut(s) 54
AsuHPI GGTGA 2 cut(s) 58, 529
BbsI GAAGAC 1 cut(s) 206
BbvI GCAGC 5 cut(s) 38, 219, 276, 314, 389
BccI CCATC 1 cut(s) 191
BciT130I CCWGG 1 cut(s) 238
BcoDI GTCTC 1 cut(s) 473
BfmI CTRYAG 1 cut(s) 333
BfoI RGCGCY 1 cut(s) 55
BglII AGATCT 1 cut(s) 337
BisI GCNGC 7 cut(s) 24, 27, 39, 208, 265, 303, 378
BlsI GCNGC 7 cut(s) 25, 28, 40, 209, 266, 304, 379
Bme1390I CCNGG 1 cut(s) 238
BmiI GGNNCC 1 cut(s) 517
BmrFI CCNGG 1 cut(s) 238
BoxI GACNNNNGTC 1 cut(s) 97
BpiI GAAGAC 1 cut(s) 206
BpmI CTGGAG 1 cut(s) 502
BsaJI CCNNGG 2 cut(s) 236, 550
Bsc4I CCNNNNNNNGG 3 cut(s) 108, 406, 525
Bse3DI GCAATG 1 cut(s) 313
BseBI CCWGG 1 cut(s) 238
BseDI CCNNGG 2 cut(s) 236, 550
BseGI GGATG 2 cut(s) 202, 232
BseLI CCNNNNNNNGG 3 cut(s) 108, 406, 525
BseMI GCAATG 1 cut(s) 313
BseMII CTCAG 2 cut(s) 378, 484
BseRI GAGGAG 1 cut(s) 51
BseXI GCAGC 5 cut(s) 38, 219, 276, 314, 389
BseYI CCCAGC 1 cut(s) 531
BslI CCNNNNNNNGG 3 cut(s) 108, 406, 525
BsmAI GTCTC 1 cut(s) 473
Bsp143I GATC 5 cut(s) 31, 115, 187, 280, 337
Bsp19I CCATGG 1 cut(s) 550
BspACI CCGC 5 cut(s) 23, 39, 102, 109, 372
BspCNI CTCAG 2 cut(s) 377, 483
BspLI GGNNCC 1 cut(s) 517
BspPI GGATC 1 cut(s) 26
BsrBI CCGCTC 1 cut(s) 109
BsrDI GCAATG 1 cut(s) 313
BssECI CCNNGG 2 cut(s) 236, 550
BssMI GATC 5 cut(s) 31, 115, 187, 280, 337
BssT1I CCWWGG 1 cut(s) 550
Bst2UI CCWGG 1 cut(s) 238
Bst4CI ACNGT 1 cut(s) 181
BstAPI GCANNNNNTGC 1 cut(s) 528
BstDEI CTNAG 2 cut(s) 364, 470
BstDSI CCRYGG 1 cut(s) 550
BstEII GGTNACC 1 cut(s) 535
BstF5I GGATG 2 cut(s) 202, 232
BstH2I RGCGCY 1 cut(s) 55
BstHHI GCGC 1 cut(s) 54
BstKTI GATC 5 cut(s) 34, 118, 190, 283, 340
BstMAI GTCTC 1 cut(s) 473
BstMBI GATC 5 cut(s) 31, 115, 187, 280, 337
BstMWI GCNNNNNNNGC 2 cut(s) 35, 528
BstNI CCWGG 1 cut(s) 238
BstNSI RCATGY 1 cut(s) 481
BstPAI GACNNNNGTC 1 cut(s) 97
BstPI GGTNACC 1 cut(s) 535
BstSCI CCNGG 1 cut(s) 236
BstSFI CTRYAG 1 cut(s) 333
BstV1I GCAGC 5 cut(s) 38, 219, 276, 314, 389
BstV2I GAAGAC 1 cut(s) 206
BstX2I RGATCY 2 cut(s) 31, 337
BstYI RGATCY 2 cut(s) 31, 337
BtgI CCRYGG 1 cut(s) 550
BtsCI GGATG 2 cut(s) 202, 232
BtsI GCAGTG 1 cut(s) 48
BtsIMutI CAGTG 1 cut(s) 48
CfoI GCGC 1 cut(s) 54
CseI GACGC 1 cut(s) 102
Csp6I GTAC 2 cut(s) 177, 361
CviAII CATG 5 cut(s) 134, 191, 381, 478, 551
CviJI RGCY 6 cut(s) 38, 248, 275, 305, 445, 516
CviKI_1 RGCY 6 cut(s) 38, 248, 275, 305, 445, 516
CviQI GTAC 2 cut(s) 177, 361
DdeI CTNAG 2 cut(s) 364, 470
DpnI GATC 5 cut(s) 33, 117, 189, 282, 339
DpnII GATC 5 cut(s) 31, 115, 187, 280, 337
Eco130I CCWWGG 1 cut(s) 550
Eco47III AGCGCT 1 cut(s) 53
Eco57I CTGAAG 2 cut(s) 376, 489
Eco91I GGTNACC 1 cut(s) 535
EcoO65I GGTNACC 1 cut(s) 535
EcoRII CCWGG 1 cut(s) 236
EcoT14I CCWWGG 1 cut(s) 550
EcoT22I ATGCAT 1 cut(s) 315
ErhI CCWWGG 1 cut(s) 550
FaeI CATG 5 cut(s) 137, 194, 384, 481, 554
FatI CATG 5 cut(s) 133, 190, 380, 477, 550
Fnu4HI GCNGC 7 cut(s) 24, 27, 39, 208, 265, 303, 378
FokI GGATG 2 cut(s) 209, 219
Fsp4HI GCNGC 7 cut(s) 24, 27, 39, 208, 265, 303, 378
GlaI GCGC 1 cut(s) 53
GluI GCNGC 7 cut(s) 24, 27, 39, 208, 265, 303, 378
GsaI CCCAGC 1 cut(s) 535
GsuI CTGGAG 1 cut(s) 502
HaeII RGCGCY 1 cut(s) 55
HgaI GACGC 1 cut(s) 102
HhaI GCGC 1 cut(s) 54
Hin1II CATG 5 cut(s) 137, 194, 384, 481, 554
Hin6I GCGC 1 cut(s) 52
HinP1I GCGC 1 cut(s) 52
HinfI GANTC 4 cut(s) 154, 326, 385, 396
HphI GGTGA 2 cut(s) 58, 529
Hpy188I TCNGA 3 cut(s) 72, 346, 395
Hpy188III TCNNGA 4 cut(s) 171, 286, 366, 560
HpyAV CCTTC 1 cut(s) 24
HpyCH4III ACNGT 1 cut(s) 181
HpyCH4V TGCA 2 cut(s) 264, 313
HpyF10VI GCNNNNNNNGC 2 cut(s) 35, 528
HpyF3I CTNAG 2 cut(s) 364, 470
Hsp92II CATG 5 cut(s) 137, 194, 384, 481, 554
HspAI GCGC 1 cut(s) 52
Kzo9I GATC 5 cut(s) 31, 115, 187, 280, 337
LmnI GCTCC 3 cut(s) 64, 374, 521
Lsp1109I GCAGC 5 cut(s) 38, 219, 276, 314, 389
MaeIII GTNAC 3 cut(s) 386, 473, 535
MalI GATC 5 cut(s) 33, 117, 189, 282, 339
MbiI CCGCTC 1 cut(s) 109
MboI GATC 5 cut(s) 31, 115, 187, 280, 337
MboII GAAGA 5 cut(s) 122, 159, 206, 495, 538
MflI RGATCY 2 cut(s) 31, 337
MluCI AATT 2 cut(s) 159, 226
MlyI GAGTC 2 cut(s) 390, 394
MnlI CCTC 6 cut(s) 72, 93, 167, 194, 247, 411
Mph1103I ATGCAT 1 cut(s) 315
MseI TTAA 2 cut(s) 87, 510
MslI CAYNNNNRTG 2 cut(s) 138, 195
MspA1I CMGCKG 1 cut(s) 23
MspR9I CCNGG 1 cut(s) 238
MvaI CCWGG 1 cut(s) 238
MwoI GCNNNNNNNGC 2 cut(s) 35, 528
NcoI CCATGG 1 cut(s) 550
NdeII GATC 5 cut(s) 31, 115, 187, 280, 337
NlaIII CATG 5 cut(s) 137, 194, 384, 481, 554
NlaIV GGNNCC 1 cut(s) 517
NmuCI GTSAC 3 cut(s) 386, 473, 535
NsiI ATGCAT 1 cut(s) 315
NspI RCATGY 1 cut(s) 481
PfeI GAWTC 2 cut(s) 154, 326
PkrI GCNGC 7 cut(s) 25, 28, 40, 209, 266, 304, 379
PleI GAGTC 2 cut(s) 390, 393
PpsI GAGTC 2 cut(s) 390, 393
PshAI GACNNNNGTC 1 cut(s) 97
Psp6I CCWGG 1 cut(s) 236
PspEI GGTNACC 1 cut(s) 535
PspFI CCCAGC 1 cut(s) 531
PspGI CCWGG 1 cut(s) 236
PspN4I GGNNCC 1 cut(s) 517
PsuI RGATCY 2 cut(s) 31, 337
RsaI GTAC 2 cut(s) 178, 362
RsaNI GTAC 2 cut(s) 177, 361
RseI CAYNNNNRTG 2 cut(s) 138, 195
SaqAI TTAA 2 cut(s) 87, 510
SatI GCNGC 7 cut(s) 24, 27, 39, 208, 265, 303, 378
Sau3AI GATC 5 cut(s) 31, 115, 187, 280, 337
SchI GAGTC 2 cut(s) 390, 394
ScrFI CCNGG 1 cut(s) 238
SetI ASST 6 cut(s) 178, 205, 250, 411, 447, 542
SfcI CTRYAG 1 cut(s) 333
SmiMI CAYNNNNRTG 2 cut(s) 138, 195
SmlI CTYRAG 1 cut(s) 560
SmoI CTYRAG 1 cut(s) 560
Sse9I AATT 2 cut(s) 159, 226
SsiI CCGC 5 cut(s) 23, 39, 102, 109, 372
StyD4I CCNGG 1 cut(s) 236
StyI CCWWGG 1 cut(s) 550
TaaI ACNGT 1 cut(s) 181
TaqI TCGA 2 cut(s) 118, 279
TasI AATT 2 cut(s) 159, 226
TatI WGTACW 1 cut(s) 360
TauI GCSGC 2 cut(s) 26, 41
TfiI GAWTC 2 cut(s) 154, 326
Tru1I TTAA 2 cut(s) 87, 510
Tru9I TTAA 2 cut(s) 87, 510
TscAI CASTG 1 cut(s) 48
TseFI GTSAC 3 cut(s) 386, 473, 535
TseI GCWGC 5 cut(s) 26, 207, 264, 302, 377
Tsp45I GTSAC 3 cut(s) 386, 473, 535
TspDTI ATGAA 5 cut(s) 6, 122, 237, 318, 431
TspRI CASTG 1 cut(s) 48
XapI RAATTY 1 cut(s) 226
XceI RCATGY 1 cut(s) 481
Zsp2I ATGCAT 1 cut(s) 315
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.